Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Forward (+)

4373258 .. 4376068

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATGCCCTACATCTATATCTCGATTTGCTTCGCTTCAGTTCTCATTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCACATTTCAATCTCCACCCACGACCCCATCTCTCCTTCCATTTCAACCCCGCCCTTTCTCTCTCATTCTTTCAATCTGCGCCCATCGCTGCCTATCTTTCTGGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGGTTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTTTGCTAGGCAAAGGACCGGTAGAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTTTAAAGTTGCTGAGTTTCCATTGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTGGTAAATCTTCACAGTGGTGTCATAAGAACTTTGTAAACTACCAAGCCATGATGGTCTCCTTAACCATTCTATTGTGGTTCCATCCTCAGCCATCAATGATGTGTATTGACATGAAATGCTTCAAACTGTTCCAGATTCGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

211

Amino Acids

23.92

Weight (kDa)

9.36

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AccI	GTMKAC	2 cut(s)	341, 465
AciI	CCGC	1 cut(s)	128
AcuI	CTGAAG	2 cut(s)	21, 464
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	5 cut(s)	87, 123, 151, 248, 610
AjnI	CCWGG	1 cut(s)	319
AleI	CACNNNNGTG	1 cut(s)	502
AluBI	AGCT	2 cut(s)	305, 630
AluI	AGCT	2 cut(s)	305, 630
Alw26I	GTCTC	1 cut(s)	547
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	166, 627
AsiGI	ACCGGT	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	262
BbvCI	CCTCAGC	2 cut(s)	375, 573
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	5 cut(s)	113, 169, 532, 576, 586
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	2 cut(s)	167, 628
BlsI	GCNGC	2 cut(s)	168, 629
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	264, 566
BmrFI	CCNGG	1 cut(s)	321
Bpu10I	CCTNAGC	2 cut(s)	375, 573
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	273, 320
BsaWI	WCCGGW	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	273, 320
BseGI	GGATG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	366, 417, 587
BseXI	GCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	262
BshTI	ACCGGT	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	547
Bsp143I	GATC	1 cut(s)	398
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	3 cut(s)	367, 418, 586
BspLI	GGNNCC	2 cut(s)	264, 566
BspT107I	GGYRCC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	273, 320
BssMI	GATC	1 cut(s)	398
BssNAI	GTATAC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	4 cut(s)	203, 222, 501, 615
Bst6I	CTCTTC	2 cut(s)	304, 342
BstDEI	CTNAG	3 cut(s)	375, 426, 573
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	321
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	153
BstZ17I	GTATAC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	319
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	2 cut(s)	208, 506
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	294
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	3 cut(s)	446, 535, 598
CviJI	RGCY	7 cut(s)	278, 305, 319, 337, 533, 577, 630
CviKI_1	RGCY	7 cut(s)	278, 305, 319, 337, 533, 577, 630
DdeI	CTNAG	3 cut(s)	375, 426, 573
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	304, 342
EarI	CTCTTC	2 cut(s)	304, 342
Eco130I	CCWWGG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	21, 464
Eco91I	GGTNACC	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	449, 538, 601
FaiI	YATR	8 cut(s)	18, 192, 228, 342, 447, 510, 536, 599
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	3 cut(s)	445, 534, 597
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	2 cut(s)	341, 465
Fnu4HI	GCNGC	2 cut(s)	167, 628
FokI	GGATG	1 cut(s)	555
Fsp4HI	GCNGC	2 cut(s)	167, 628
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	167, 628
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	449, 538, 601
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	382, 622
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	4 cut(s)	199, 342, 466, 523
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	3 cut(s)	22, 386, 619
Hpy8I	GTNNAC	4 cut(s)	199, 342, 466, 523
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	4 cut(s)	203, 222, 501, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	3 cut(s)	375, 426, 573
Hsp92II	CATG	3 cut(s)	449, 538, 601
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	398
LpnPI	CCDG	9 cut(s)	164, 239, 291, 306, 310, 319, 333, 399, 471
Lsp1109I	GCAGC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	329, 440
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	4 cut(s)	321, 359, 470, 486
MnlI	CCTC	3 cut(s)	81, 370, 582
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	2 cut(s)	417, 548
MslI	CAYNNNNRTG	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	3 cut(s)	449, 538, 601
NlaIV	GGNNCC	2 cut(s)	264, 566
NmuCI	GTSAC	1 cut(s)	440
OliI	CACNNNNGTG	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	2 cut(s)	382, 622
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	168, 629
Psp6I	CCWGG	1 cut(s)	319
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	264, 566
PspPI	GGNCC	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	417, 548
SatI	GCNGC	2 cut(s)	167, 628
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	2 cut(s)	307, 632
SinI	GGWCC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	502
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	203, 222, 501, 615
TaqI	TCGA	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	382, 622
Tru1I	TTAA	2 cut(s)	417, 548
Tru9I	TTAA	2 cut(s)	417, 548
TscAI	CASTG	2 cut(s)	208, 506
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	2 cut(s)	166, 627
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	2 cut(s)	208, 506
VpaK11BI	GGWCC	1 cut(s)	294
XmiI	GTMKAC	2 cut(s)	341, 465
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.