Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Reverse (-)

34499744 .. 34501760

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAACGCAGCAGAGTCGGCGATGTGCTTTGGAGTTTTGGGTTTTGAGAGAGATCCATGAATCAAGTTTTGCTACTTACGTTGTAATATTTGCCCATTTGATTTGTTCTGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGGTTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTTTGCTAGGCAAAGGACCGGTAGAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGGCATGCTCTGCTATTCCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

126

Amino Acids

14.33

Weight (kDa)

8.66

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	49, 346
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	250, 354
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AlwI	GGATC	2 cut(s)	49, 346
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	10
AsiGI	ACCGGT	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	193
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	252, 356
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	252, 356
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	252, 356
Bpu10I	CCTNAGC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	204, 251
BsaWI	WCCGGW	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	252, 356
BseDI	CCNNGG	2 cut(s)	204, 251
BseMII	CTCAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	193
BshTI	ACCGGT	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	228
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	54, 329, 351
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	49, 346
BspT107I	GGYRCC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	204, 251
BssMI	GATC	3 cut(s)	54, 329, 351
BssNAI	GTATAC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	252, 356
Bst4CI	ACNGT	2 cut(s)	134, 153
Bst6I	CTCTTC	2 cut(s)	235, 273
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	306
BstKTI	GATC	3 cut(s)	57, 332, 354
BstMBI	GATC	3 cut(s)	54, 329, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 365
BstNI	CCWGG	2 cut(s)	252, 356
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	250, 354
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BstZ17I	GTATAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	225
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	2 cut(s)	59, 360
CviJI	RGCY	4 cut(s)	209, 236, 250, 268
CviKI_1	RGCY	4 cut(s)	209, 236, 250, 268
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	56, 331, 353
DpnII	GATC	3 cut(s)	54, 329, 351
Eam1104I	CTCTTC	2 cut(s)	235, 273
EarI	CTCTTC	2 cut(s)	235, 273
Eco130I	CCWWGG	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	250, 354
EcoRV	GATATC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	62, 363
FaiI	YATR	5 cut(s)	60, 123, 159, 273, 361
FatI	CATG	2 cut(s)	58, 359
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	2 cut(s)	62, 363
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	16, 62, 313
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	130, 273
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	130, 273
HpyCH4III	ACNGT	2 cut(s)	134, 153
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 365
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	62, 363
Kzo9I	GATC	3 cut(s)	54, 329, 351
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	56, 331, 353
MboI	GATC	3 cut(s)	54, 329, 351
MboII	GAAGA	2 cut(s)	252, 290
MflI	RGATCY	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	1 cut(s)	301
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	252, 356
MvaI	CCWGG	2 cut(s)	252, 356
MwoI	GCNNNNNNNGC	2 cut(s)	19, 365
NdeII	GATC	3 cut(s)	54, 329, 351
NlaIII	CATG	2 cut(s)	62, 363
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	363
PaeI	GCATGC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	62, 313
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	250, 354
PspGI	CCWGG	2 cut(s)	250, 354
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	54
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	3 cut(s)	54, 329, 351
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	252, 356
SetI	ASST	2 cut(s)	84, 238
SinI	GGWCC	1 cut(s)	225
SphI	GCATGC	1 cut(s)	363
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	250, 354
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	134, 153
TaiI	ACGT	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	62, 313
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	225
XceI	RCATGY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.