Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Reverse (-)

71496227 .. 71513014

Gene Structure 16788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG537900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCCTCTAGAAGTCTGGTCGAAAATACAAGCATCAGGTGGCTACTGTTCGATGTTTCAGGCGATATTTCTGGTGTGAATCATGCTGACAATTTTGCTTCTGGAGAGAGTAGTCGAAGTAACAGGTTGCCGGTTGTATCTGCATCGGCATCATCCTCTTTGCTGCCGGATTCCGGTATCACTGGTGGGCAGGCGTTGAACAAGATGGTGGTTAGGCCACCGGAGGCGGTTGGCTCTTCCCAACAGTTGCAGTCGCTACATCTATATCTCGATTTGCTTCGCTTCAGTTCTCATTCTCTCTCTCTCTCTCTCTCTCTCACATTTCAATCTCCACCCACGACCCCATCTCTCCTTCCATTTCAACCCCGCCCTTTCTCTCTCATTCTTTCAATCTGCGCCCATCGCTGCCTATCTTTCTGGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGGTTCTATAACCCGATATCAGATATTGAAATCTGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTGGTAAATCTTCACAGTGGTGTCATAAGAACTTTGTAAACTACCAAGCCATGGGTGTTTCAAGAGCACTGGTTGAAAATTCCAGAACCTTACTACTGCCTACACATTTGCATGAGAGGTTAGGGTTAATCAAAAATGCAAAAGTTAGATTGCAACATAAACGAATAACTCCATCTATTGATTTTCGATGCAAATTCACCGATATCAATAGTATACCCGGCTACCTGCAGCACCGCGCGGGGTTTTTGCCTAGTGAATATCTAAAGCATCAAAAGAGCATTCCACCTGCAACCAGTTTTTATAAAATCCTTCAATGTAGACCCTCTTTTGAGTCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

333

Amino Acids

37.15

Weight (kDa)

9.7

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
AarI	CACCTGC	1 cut(s)	955
Acc36I	ACCTGC	2 cut(s)	894, 955
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	4 cut(s)	530, 642, 874, 979
AccII	CGCG	2 cut(s)	897, 899
AciI	CCGC	4 cut(s)	227, 367, 895, 899
AclWI	GGATC	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	739, 854
AcuI	CTGAAG	2 cut(s)	268, 641
AfiI	CCNNNNNNNGG	2 cut(s)	173, 712
AgsI	TTSAA	8 cut(s)	199, 326, 362, 390, 487, 723, 737, 974
AjnI	CCWGG	2 cut(s)	508, 612
AleI	CACNNNNGTG	1 cut(s)	679
Alw21I	GWGCWC	1 cut(s)	730
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	3 cut(s)	3, 215, 506
ApeKI	GCWGC	3 cut(s)	163, 405, 889
ApoI	RAATTY	2 cut(s)	739, 854
AspLEI	GCGC	2 cut(s)	398, 899
AsuC2I	CCSGG	1 cut(s)	879
AsuHPI	GGTGA	2 cut(s)	629, 850
Bbv12I	GWGCWC	1 cut(s)	730
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	3 cut(s)	150, 392, 901
BccI	CCATC	4 cut(s)	199, 352, 408, 841
BciT130I	CCWGG	2 cut(s)	510, 614
BcnI	CCSGG	1 cut(s)	879
BfaI	CTAG	2 cut(s)	9, 912
BfmI	CTRYAG	1 cut(s)	887
BfuAI	ACCTGC	2 cut(s)	894, 955
BisI	GCNGC	3 cut(s)	164, 406, 890
BlsI	GCNGC	3 cut(s)	165, 407, 891
Bme1390I	CCNGG	3 cut(s)	510, 614, 879
BmrFI	CCNGG	3 cut(s)	510, 614, 879
BmsI	GCATC	5 cut(s)	42, 152, 158, 839, 937
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	879
BsaJI	CCNNGG	3 cut(s)	509, 613, 711
BsaWI	WCCGGW	2 cut(s)	173, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 712
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	3 cut(s)	187, 735, 954
BseBI	CCWGG	2 cut(s)	510, 614
BseDI	CCNNGG	3 cut(s)	509, 613, 711
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	173, 712
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	3 cut(s)	187, 735, 954
BseXI	GCAGC	3 cut(s)	150, 392, 901
Bsh1236I	CGCG	2 cut(s)	897, 899
BshFI	GGCC	3 cut(s)	5, 217, 508
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	5 cut(s)	131, 167, 174, 221, 879
BslI	CCNNNNNNNGG	2 cut(s)	173, 712
BsmI	GAATGC	1 cut(s)	939
BsnI	GGCC	3 cut(s)	5, 217, 508
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	2 cut(s)	587, 609
Bsp19I	CCATGG	1 cut(s)	711
BspACI	CCGC	4 cut(s)	227, 367, 895, 899
BspANI	GGCC	3 cut(s)	5, 217, 508
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	2 cut(s)	897, 899
BspMAI	CTGCAG	1 cut(s)	891
BspMI	ACCTGC	2 cut(s)	894, 955
BspPI	GGATC	1 cut(s)	604
BspQI	GCTCTTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	187, 735, 954
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	509, 613, 711
BssMI	GATC	2 cut(s)	587, 609
BssNAI	GTATAC	2 cut(s)	531, 875
BssT1I	CCWWGG	1 cut(s)	711
Bst1107I	GTATAC	2 cut(s)	531, 875
Bst2UI	CCWGG	2 cut(s)	510, 614
Bst4CI	ACNGT	5 cut(s)	48, 246, 442, 461, 678
Bst6I	CTCTTC	3 cut(s)	241, 493, 531
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	1 cut(s)	711
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	2 cut(s)	897, 899
BstHHI	GCGC	2 cut(s)	398, 899
BstKTI	GATC	2 cut(s)	590, 612
BstMBI	GATC	2 cut(s)	587, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNI	CCWGG	2 cut(s)	510, 614
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	508, 612, 877
BstSFI	CTRYAG	1 cut(s)	887
BstUI	CGCG	2 cut(s)	897, 899
BstV1I	GCAGC	3 cut(s)	150, 392, 901
BstZ17I	GTATAC	2 cut(s)	531, 875
BsuRI	GGCC	3 cut(s)	5, 217, 508
BtgI	CCRYGG	1 cut(s)	711
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	4 cut(s)	180, 447, 683, 728
BveI	ACCTGC	2 cut(s)	894, 955
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	2 cut(s)	398, 899
Cfr10I	RCCGGY	1 cut(s)	130
CviAII	CATG	4 cut(s)	83, 623, 712, 773
CviJI	RGCY	8 cut(s)	5, 43, 217, 234, 508, 526, 710, 882
CviKI_1	RGCY	8 cut(s)	5, 43, 217, 234, 508, 526, 710, 882
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	2 cut(s)	589, 611
DpnII	GATC	2 cut(s)	587, 609
Eam1104I	CTCTTC	3 cut(s)	241, 493, 531
EarI	CTCTTC	3 cut(s)	241, 493, 531
Eco130I	CCWWGG	1 cut(s)	711
Eco32I	GATATC	2 cut(s)	476, 865
Eco57I	CTGAAG	2 cut(s)	268, 641
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	508, 612
EcoRV	GATATC	2 cut(s)	476, 865
EcoT14I	CCWWGG	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	4 cut(s)	86, 626, 715, 776
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FatI	CATG	4 cut(s)	82, 622, 711, 772
FauI	CCCGC	2 cut(s)	374, 892
FblI	GTMKAC	4 cut(s)	530, 642, 874, 979
Fnu4HI	GCNGC	3 cut(s)	164, 406, 890
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	3 cut(s)	164, 406, 890
FspBI	CTAG	2 cut(s)	9, 912
GlaI	GCGC	2 cut(s)	397, 898
GluI	GCNGC	3 cut(s)	164, 406, 890
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	5, 217, 508
HapII	CCGG	5 cut(s)	131, 167, 174, 221, 879
HhaI	GCGC	2 cut(s)	398, 899
Hin1II	CATG	4 cut(s)	86, 626, 715, 776
Hin6I	GCGC	2 cut(s)	396, 897
HinP1I	GCGC	2 cut(s)	396, 897
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	4 cut(s)	79, 170, 571, 992
HpaII	CCGG	5 cut(s)	131, 167, 174, 221, 879
HphI	GGTGA	2 cut(s)	629, 850
Hpy166II	GTNNAC	6 cut(s)	438, 531, 643, 700, 875, 980
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	6 cut(s)	9, 102, 269, 575, 723, 744
Hpy8I	GTNNAC	6 cut(s)	438, 531, 643, 700, 875, 980
HpyAV	CCTTC	2 cut(s)	362, 980
HpyCH4III	ACNGT	5 cut(s)	48, 246, 442, 461, 678
HpyCH4V	TGCA	8 cut(s)	143, 250, 772, 800, 814, 852, 889, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	1 cut(s)	564
Hsp92II	CATG	4 cut(s)	86, 626, 715, 776
HspAI	GCGC	2 cut(s)	396, 897
Kzo9I	GATC	2 cut(s)	587, 609
LguI	GCTCTTC	1 cut(s)	241
Lsp1109I	GCAGC	3 cut(s)	150, 392, 901
LweI	GCATC	5 cut(s)	42, 152, 158, 839, 937
MaeI	CTAG	2 cut(s)	9, 912
MaeIII	GTNAC	3 cut(s)	119, 518, 617
MalI	GATC	2 cut(s)	589, 611
MboI	GATC	2 cut(s)	587, 609
MboII	GAAGA	5 cut(s)	228, 510, 548, 647, 663
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	3 cut(s)	91, 739, 854
MlyI	GAGTC	1 cut(s)	1001
MnlI	CCTC	6 cut(s)	16, 166, 217, 559, 771, 994
MseI	TTAA	1 cut(s)	788
MslI	CAYNNNNRTG	2 cut(s)	679, 771
MspI	CCGG	5 cut(s)	131, 167, 174, 221, 879
MspR9I	CCNGG	3 cut(s)	510, 614, 879
Mva1269I	GAATGC	1 cut(s)	939
MvaI	CCWGG	2 cut(s)	510, 614
MvnI	CGCG	2 cut(s)	897, 899
MwoI	GCNNNNNNNGC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	879
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	2 cut(s)	587, 609
NlaIII	CATG	4 cut(s)	86, 626, 715, 776
NmuCI	GTSAC	1 cut(s)	617
OliI	CACNNNNGTG	1 cut(s)	679
PaqCI	CACCTGC	1 cut(s)	955
PciSI	GCTCTTC	1 cut(s)	241
PctI	GAATGC	1 cut(s)	939
PfeI	GAWTC	3 cut(s)	79, 170, 571
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	3 cut(s)	165, 407, 891
PleI	GAGTC	1 cut(s)	1000
PpsI	GAGTC	1 cut(s)	1000
PsiI	TTATAA	1 cut(s)	963
Psp6I	CCWGG	2 cut(s)	508, 612
PspEI	GGTNACC	1 cut(s)	617
PspGI	CCWGG	2 cut(s)	508, 612
PstI	CTGCAG	1 cut(s)	891
RseI	CAYNNNNRTG	2 cut(s)	679, 771
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	788
SatI	GCNGC	3 cut(s)	164, 406, 890
Sau3AI	GATC	2 cut(s)	587, 609
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	3 cut(s)	510, 614, 879
SduI	GDGCHC	1 cut(s)	730
SetI	ASST	6 cut(s)	41, 128, 752, 782, 888, 949
SfaNI	GCATC	5 cut(s)	42, 152, 158, 839, 937
SfcI	CTRYAG	1 cut(s)	887
SmiMI	CAYNNNNRTG	2 cut(s)	679, 771
Sse9I	AATT	3 cut(s)	91, 739, 854
SsiI	CCGC	4 cut(s)	227, 367, 895, 899
SspMI	CTAG	2 cut(s)	9, 912
StyD4I	CCNGG	3 cut(s)	508, 612, 877
StyI	CCWWGG	1 cut(s)	711
TaaI	ACNGT	5 cut(s)	48, 246, 442, 461, 678
TaqI	TCGA	5 cut(s)	21, 51, 115, 270, 847
TasI	AATT	3 cut(s)	91, 739, 854
TfiI	GAWTC	3 cut(s)	79, 170, 571
Tru1I	TTAA	1 cut(s)	788
Tru9I	TTAA	1 cut(s)	788
TscAI	CASTG	4 cut(s)	187, 447, 683, 735
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	3 cut(s)	163, 405, 889
Tsp45I	GTSAC	1 cut(s)	617
TspRI	CASTG	4 cut(s)	187, 447, 683, 735
Van91I	CCANNNNNTGG	1 cut(s)	712
XapI	RAATTY	2 cut(s)	739, 854
XbaI	TCTAGA	1 cut(s)	8
XmiI	GTMKAC	4 cut(s)	530, 642, 874, 979
XspI	CTAG	2 cut(s)	9, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.