Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000456.1

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Reverse (-)

128540 .. 129760

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000456.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ctgcgcccatcgctgcctatctttctgggcgtggtctatgttgttgacagtgggttctcaaagcaacggttctataacccgatatcagatattgaaaatctggtagtggcaccaatatccaaggcttttgctaggcaaaggaccggtagagctggaagagttcggcctgggaaatgttacaggctgtatacagaagagtattttgtaaaggaaatgtctgctgaggggattccagagatacaaagatcaaatcttgtttcctgtgtgatccaggcatgctctgctattccaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

9.41

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	262
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	166, 270
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	13
AsiGI	ACCGGT	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	168, 272
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	168, 272
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	168, 272
Bpu10I	CCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	120, 167
BsaWI	WCCGGW	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	168, 272
BseDI	CCNNGG	2 cut(s)	120, 167
BseMII	CTCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	109
BshTI	ACCGGT	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	144
BsnI	GGCC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	245, 267
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	120, 167
BssMI	GATC	2 cut(s)	245, 267
BssNAI	GTATAC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	120
Bst1107I	GTATAC	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	168, 272
Bst4CI	ACNGT	2 cut(s)	50, 69
Bst6I	CTCTTC	2 cut(s)	151, 189
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	248, 270
BstMBI	GATC	2 cut(s)	245, 267
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 281
BstNI	CCWGG	2 cut(s)	168, 272
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	166, 270
BstZ17I	GTATAC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	4 cut(s)	125, 152, 166, 184
CviKI_1	RGCY	4 cut(s)	125, 152, 166, 184
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	247, 269
DpnII	GATC	2 cut(s)	245, 267
Eam1104I	CTCTTC	2 cut(s)	151, 189
EarI	CTCTTC	2 cut(s)	151, 189
Eco130I	CCWWGG	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	166, 270
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	279
FaiI	YATR	4 cut(s)	39, 75, 189, 277
FatI	CATG	1 cut(s)	275
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	2 cut(s)	46, 189
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	46, 189
HpyCH4III	ACNGT	2 cut(s)	50, 69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 281
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	245, 267
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	247, 269
MboI	GATC	2 cut(s)	245, 267
MboII	GAAGA	2 cut(s)	168, 206
MnlI	CCTC	1 cut(s)	217
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	168, 272
MvaI	CCWGG	2 cut(s)	168, 272
MwoI	GCNNNNNNNGC	2 cut(s)	10, 281
NdeII	GATC	2 cut(s)	245, 267
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	166, 270
PspGI	CCWGG	2 cut(s)	166, 270
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	245, 267
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	168, 272
SetI	ASST	1 cut(s)	154
SinI	GGWCC	1 cut(s)	141
SphI	GCATGC	1 cut(s)	279
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	166, 270
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	50, 69
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	13
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	141
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.