Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Reverse (-)

78253942 .. 78258374

Gene Structure 4433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG567500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTGGTTAGGCCACCGGAGGCGGTTGGCTCTTCCCAACAGTTGCAGTCGGAAGCAGCTACATCTATATCTCGATTTGCTTCGCTTCAGTTCTCATTCTCTCTCTCTCTCTCTCTCTCTCACATTTCAATCTCCACCCACGACCCCATCTCTCCTTCCATTTCAACCCCGCCCTTTCTCTCTCATTCTTTCAATCTGCGCCCATCGCTGCCTATCTTTCTGGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGGTTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTTTGCTAGGCAAAGGACCGGTAGAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGGCATGCTCTGCTATTCCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

9.18

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	383
AciI	CCGC	2 cut(s)	23, 170
AclWI	GGATC	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	129, 165, 193, 290
AjnI	CCWGG	2 cut(s)	361, 465
AluBI	AGCT	2 cut(s)	59, 347
AluI	AGCT	2 cut(s)	59, 347
AlwI	GGATC	1 cut(s)	457
AoxI	GGCC	2 cut(s)	11, 359
ApeKI	GCWGC	2 cut(s)	56, 208
AsiGI	ACCGGT	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	68, 195
BccI	CCATC	2 cut(s)	155, 211
BciT130I	CCWGG	2 cut(s)	363, 467
BfaI	CTAG	1 cut(s)	327
BisI	GCNGC	2 cut(s)	57, 209
BlsI	GCNGC	2 cut(s)	58, 210
Bme1390I	CCNGG	2 cut(s)	363, 467
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	363, 467
Bpu10I	CCTNAGC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	315, 362
BsaWI	WCCGGW	2 cut(s)	16, 338
Bse118I	RCCGGY	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	363, 467
BseDI	CCNNGG	2 cut(s)	315, 362
BseMII	CTCAG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	68, 195
BshFI	GGCC	2 cut(s)	13, 361
BshNI	GGYRCC	1 cut(s)	304
BshTI	ACCGGT	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	17, 339
BsnI	GGCC	2 cut(s)	13, 361
Bsp143I	GATC	2 cut(s)	440, 462
BspACI	CCGC	2 cut(s)	23, 170
BspANI	GGCC	2 cut(s)	13, 361
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	457
BspQI	GCTCTTC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	315, 362
BssMI	GATC	2 cut(s)	440, 462
BssNAI	GTATAC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	315
Bst1107I	GTATAC	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	363, 467
Bst4CI	ACNGT	3 cut(s)	42, 245, 264
Bst6I	CTCTTC	3 cut(s)	37, 346, 384
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	443, 465
BstMBI	GATC	2 cut(s)	440, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 476
BstNI	CCWGG	2 cut(s)	363, 467
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	361, 465
BstV1I	GCAGC	2 cut(s)	68, 195
BstZ17I	GTATAC	1 cut(s)	384
BsuRI	GGCC	2 cut(s)	13, 361
BtgZI	GCGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	336
CspAI	ACCGGT	1 cut(s)	338
CviAII	CATG	1 cut(s)	471
CviJI	RGCY	7 cut(s)	13, 30, 59, 320, 347, 361, 379
CviKI_1	RGCY	7 cut(s)	13, 30, 59, 320, 347, 361, 379
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	442, 464
DpnII	GATC	2 cut(s)	440, 462
Eam1104I	CTCTTC	3 cut(s)	37, 346, 384
EarI	CTCTTC	3 cut(s)	37, 346, 384
Eco130I	CCWWGG	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	361, 465
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	474
FaiI	YATR	5 cut(s)	68, 234, 270, 384, 472
FatI	CATG	1 cut(s)	470
FauI	CCCGC	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	383
Fnu4HI	GCNGC	2 cut(s)	57, 209
Fsp4HI	GCNGC	2 cut(s)	57, 209
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	57, 209
HaeIII	GGCC	2 cut(s)	13, 361
HapII	CCGG	2 cut(s)	17, 339
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	474
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	424
HpaII	CCGG	2 cut(s)	17, 339
Hpy166II	GTNNAC	2 cut(s)	241, 384
Hpy188I	TCNGA	2 cut(s)	52, 283
Hpy188III	TCNNGA	2 cut(s)	72, 428
Hpy8I	GTNNAC	2 cut(s)	241, 384
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	3 cut(s)	42, 245, 264
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 476
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	474
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	440, 462
LguI	GCTCTTC	1 cut(s)	37
Lsp1109I	GCAGC	2 cut(s)	68, 195
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	442, 464
MboI	GATC	2 cut(s)	440, 462
MboII	GAAGA	3 cut(s)	24, 363, 401
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	13, 412
MspI	CCGG	2 cut(s)	17, 339
MspR9I	CCNGG	2 cut(s)	363, 467
MvaI	CCWGG	2 cut(s)	363, 467
MwoI	GCNNNNNNNGC	2 cut(s)	205, 476
NdeII	GATC	2 cut(s)	440, 462
NlaIII	CATG	1 cut(s)	474
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	424
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	58, 210
Psp6I	CCWGG	2 cut(s)	361, 465
PspGI	CCWGG	2 cut(s)	361, 465
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	37
SatI	GCNGC	2 cut(s)	57, 209
Sau3AI	GATC	2 cut(s)	440, 462
Sau96I	GGNCC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	363, 467
SetI	ASST	2 cut(s)	61, 349
SinI	GGWCC	1 cut(s)	336
SphI	GCATGC	1 cut(s)	474
SsiI	CCGC	2 cut(s)	23, 170
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	361, 465
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	42, 245, 264
TaqI	TCGA	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	424
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	2 cut(s)	56, 208
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	336
XceI	RCATGY	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	383
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.