Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Forward (+)

77075923 .. 77078017

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG542900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGCCGTACGACGTTGATTGCGGGCTTTGCGGCTTCTGGGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGATTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTCTGCTAGGCAAAGGACCGGTAAAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGAATTCAAAGGCTTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

8.56

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	203
AciI	CCGC	2 cut(s)	24, 33
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	110, 294
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	289
AsiGI	ACCGGT	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	135, 182
BsaWI	WCCGGW	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	2 cut(s)	135, 182
BseMII	CTCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	159
BsiWI	CGTACG	1 cut(s)	9
BsnI	GGCC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	260, 282
BspACI	CCGC	2 cut(s)	24, 33
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	135, 182
BssMI	GATC	2 cut(s)	260, 282
BssNAI	GTATAC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	2 cut(s)	166, 204
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	263, 285
BstMBI	GATC	2 cut(s)	260, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 42
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstZ17I	GTATAC	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	158
CviJI	RGCY	7 cut(s)	28, 36, 140, 167, 181, 199, 299
CviKI_1	RGCY	7 cut(s)	28, 36, 140, 167, 181, 199, 299
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	262, 284
DpnII	GATC	2 cut(s)	260, 282
Eam1104I	CTCTTC	2 cut(s)	166, 204
EarI	CTCTTC	2 cut(s)	166, 204
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	3 cut(s)	54, 90, 204
FauI	CCCGC	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	84, 244
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	2 cut(s)	61, 204
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	248, 286
Hpy8I	GTNNAC	2 cut(s)	61, 204
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 42
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	260, 282
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	262, 284
MboI	GATC	2 cut(s)	260, 282
MboII	GAAGA	2 cut(s)	183, 221
MluCI	AATT	1 cut(s)	289
MnlI	CCTC	1 cut(s)	232
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	30, 42
NdeII	GATC	2 cut(s)	260, 282
NlaIV	GGNNCC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	84, 244
Pfl23II	CGTACG	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	156
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	260, 282
Sau96I	GGNCC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	2 cut(s)	18, 169
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	2 cut(s)	24, 33
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	289
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	84, 244
TscAI	CASTG	1 cut(s)	70
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	203
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.