Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Forward (+)

30049919 .. 30095257

Gene Structure 45339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG246500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTGAATGTAGACGATGGGGACTTAGACCCCACGAGAGGAAAAAATGGTGTGGGAATTATTCCTAGAGATCAGAGTGGGGCTTTGGATCAGAATATCAGATCAAAAAAACACAGGTTCAGTAGTCTCACACTCTCACCTCGATCACTTTTCGCCAGTCTTCTTGTTAAGTTGGAGTACCATACTGAGGAAAGATATGAGAGAGAGAAGCTCCTCAAATTTTGGATTCAATCATTCTTAGCAGGCGTTCCCTATATTGTAATTGGGTTTAGGGATGATTCAGGTCGACTTGTCCGCACAGAGAGACTAAGAACCAAAGATATAACACAGAGAGTGAAAACGAAGAACTACTGGCAGGGAGGAGTTTACTGGCATTCGCTGATGAGGTATTATGCTGGCTGTATGGAACAGTTAAAGAGAGAAGCAGCTACATCTATATCTCGATTTGCTTCGCTGCCTATCTTTCTGGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGGTTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTTTGCTAGGCAAAGGACCGGTAGAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATATAGAAGAGTATTTTGTAAAGGAAATGTCTACTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTGGTAAATCTTCACAGTGGTGTCATAAGAACTTTGTAAACTACCAAGCCATGGAGAAGTGCCCCAAGGATATTTCAAAGCGTCTTGTCCTGCTTCTATTCCCTATACTCACTATTGAACCACTCTCTTTGCCGCCTCGGCGTCTAGGAACAGCCATGACGCCTACAGCTCATCTGATCCAAGCTGACACAGTGTCCTTGGAAGAGTACTCAAAGACCTCGTGTAAGCCCAAAGAGCATCATGAGATCCTGAAGGTATTGTTAGGGCTCAAAGGCCTCGTACGGATTAGGATTAGGAATAACAAGAAGAAGAAGAGGGTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

361

Amino Acids

41.53

Weight (kDa)

9.86

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RAI1	PF08652	60 - 142	2.5e-20	RAI1 like PD-(D/E)XK nuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccI	GTMKAC	4 cut(s)	12, 286, 659, 741
AciI	CCGC	2 cut(s)	295, 893
AclWI	GGATC	4 cut(s)	96, 703, 931, 1000
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	740, 1031
AcyI	GRCGYC	2 cut(s)	901, 920
AfaI	GTAC	3 cut(s)	179, 968, 1041
AfiI	CCNNNNNNNGG	3 cut(s)	38, 187, 811
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	5 cut(s)	7, 230, 536, 837, 878
AhdI	GACNNNNNGTC	1 cut(s)	952
AjnI	CCWGG	2 cut(s)	607, 711
AleI	CACNNNNGTG	1 cut(s)	778
AluBI	AGCT	5 cut(s)	211, 428, 593, 929, 944
AluI	AGCT	5 cut(s)	211, 428, 593, 929, 944
Alw26I	GTCTC	2 cut(s)	131, 298
AlwI	GGATC	4 cut(s)	96, 703, 931, 1000
AoxI	GGCC	2 cut(s)	605, 1033
ApeKI	GCWGC	2 cut(s)	425, 454
ApoI	RAATTY	1 cut(s)	218
AsiGI	ACCGGT	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	582
AsuHPI	GGTGA	2 cut(s)	129, 728
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	1029
BauI	CACGAG	2 cut(s)	34, 979
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	437, 441
BccI	CCATC	1 cut(s)	11
BciT130I	CCWGG	2 cut(s)	609, 713
BcoDI	GTCTC	2 cut(s)	131, 298
BfaI	CTAG	3 cut(s)	66, 573, 905
BfmI	CTRYAG	1 cut(s)	924
BglI	GCCNNNNNGGC	1 cut(s)	898
BisI	GCNGC	3 cut(s)	426, 455, 893
BlsI	GCNGC	3 cut(s)	427, 456, 894
BmcAI	AGTACT	1 cut(s)	968
Bme1390I	CCNGG	2 cut(s)	609, 713
Bme18I	GGWCC	1 cut(s)	582
BmeRI	GACNNNNNGTC	1 cut(s)	952
BmgT120I	GGNCC	1 cut(s)	582
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	2 cut(s)	609, 713
BmsI	GCATC	1 cut(s)	1006
BpiI	GAAGAC	1 cut(s)	152
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BsaHI	GRCGYC	2 cut(s)	901, 920
BsaJI	CCNNGG	7 cut(s)	561, 608, 712, 810, 825, 896, 957
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 187, 811
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	3 cut(s)	156, 356, 374
BseBI	CCWGG	2 cut(s)	609, 713
BseDI	CCNNGG	7 cut(s)	561, 608, 712, 810, 825, 896, 957
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	38, 187, 811
BseMII	CTCAG	2 cut(s)	177, 654
BseNI	ACTGG	3 cut(s)	156, 356, 374
BseRI	GAGGAG	2 cut(s)	203, 375
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	2 cut(s)	437, 441
BshFI	GGCC	2 cut(s)	607, 1035
BshNI	GGYRCC	1 cut(s)	550
BshTI	ACCGGT	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	585
BsiWI	CGTACG	1 cut(s)	1039
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	38, 187, 811
BsmAI	GTCTC	2 cut(s)	131, 298
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	607, 1035
Bsp1286I	GDGCHC	2 cut(s)	824, 1029
Bsp143I	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
Bsp19I	CCATGG	1 cut(s)	810
BspACI	CCGC	2 cut(s)	295, 893
BspANI	GGCC	2 cut(s)	607, 1035
BspCNI	CTCAG	2 cut(s)	178, 655
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	4 cut(s)	96, 703, 931, 1000
BspT107I	GGYRCC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	156, 356, 374
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	7 cut(s)	561, 608, 712, 810, 825, 896, 957
BssMI	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
BssNI	GRCGYC	2 cut(s)	901, 920
BssSI	CACGAG	2 cut(s)	34, 979
BssT1I	CCWWGG	4 cut(s)	561, 810, 825, 957
Bst2BI	CACGAG	2 cut(s)	34, 979
Bst2UI	CCWGG	2 cut(s)	609, 713
Bst4CI	ACNGT	5 cut(s)	411, 491, 510, 777, 952
Bst6I	CTCTTC	4 cut(s)	592, 630, 957, 1067
BstACI	GRCGYC	2 cut(s)	901, 920
BstC8I	GCNNGC	2 cut(s)	244, 397
BstDEI	CTNAG	5 cut(s)	25, 186, 238, 308, 663
BstDSI	CCRYGG	1 cut(s)	810
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	8 cut(s)	73, 91, 104, 146, 689, 711, 939, 1008
BstMAI	GTCTC	2 cut(s)	131, 298
BstMBI	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
BstMWI	GCNNNNNNNGC	2 cut(s)	898, 994
BstNI	CCWGG	2 cut(s)	609, 713
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	607, 711
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	437, 441
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	1005
BstYI	RGATCY	1 cut(s)	1005
BsuRI	GGCC	2 cut(s)	607, 1035
BtgI	CCRYGG	1 cut(s)	810
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	496, 782, 957
Cac8I	GCNNGC	2 cut(s)	244, 397
CciI	TCATGA	1 cut(s)	1000
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	582
CseI	GACGC	3 cut(s)	830, 890, 928
Csp6I	GTAC	3 cut(s)	178, 967, 1040
CspAI	ACCGGT	1 cut(s)	584
CspCI	CAANNNNNGTGG	2 cut(s)	870, 905
CviAII	CATG	4 cut(s)	722, 811, 916, 1001
CviQI	GTAC	3 cut(s)	178, 967, 1040
DdeI	CTNAG	5 cut(s)	25, 186, 238, 308, 663
DpnI	GATC	8 cut(s)	72, 90, 103, 145, 688, 710, 938, 1007
DpnII	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
DriI	GACNNNNNGTC	1 cut(s)	952
Eam1104I	CTCTTC	4 cut(s)	592, 630, 957, 1067
Eam1105I	GACNNNNNGTC	1 cut(s)	952
EarI	CTCTTC	4 cut(s)	592, 630, 957, 1067
Eco130I	CCWWGG	4 cut(s)	561, 810, 825, 957
Eco147I	AGGCCT	1 cut(s)	1035
Eco24I	GRGCYC	1 cut(s)	1029
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	2 cut(s)	740, 1031
Eco91I	GGTNACC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	607, 711
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	4 cut(s)	561, 810, 825, 957
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	4 cut(s)	561, 810, 825, 957
FaeI	CATG	4 cut(s)	725, 814, 919, 1004
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	4 cut(s)	721, 810, 915, 1000
FblI	GTMKAC	4 cut(s)	12, 286, 659, 741
Fnu4HI	GCNGC	3 cut(s)	426, 455, 893
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	3 cut(s)	426, 455, 893
FspBI	CTAG	3 cut(s)	66, 573, 905
GluI	GCNGC	3 cut(s)	426, 455, 893
HaeIII	GGCC	2 cut(s)	607, 1035
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	3 cut(s)	830, 890, 928
Hin1I	GRCGYC	2 cut(s)	901, 920
Hin1II	CATG	4 cut(s)	725, 814, 919, 1004
HincII	GTYRAC	2 cut(s)	287, 487
HindII	GTYRAC	2 cut(s)	287, 487
HinfI	GANTC	3 cut(s)	226, 278, 670
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	129, 728
Hpy166II	GTNNAC	7 cut(s)	13, 287, 367, 487, 660, 742, 799
Hpy188I	TCNGA	5 cut(s)	75, 93, 101, 529, 936
Hpy188III	TCNNGA	4 cut(s)	441, 674, 1001, 1009
Hpy8I	GTNNAC	7 cut(s)	13, 287, 367, 487, 660, 742, 799
HpyAV	CCTTC	1 cut(s)	1006
HpyCH4III	ACNGT	5 cut(s)	411, 491, 510, 777, 952
HpyF10VI	GCNNNNNNNGC	2 cut(s)	898, 994
HpyF3I	CTNAG	5 cut(s)	25, 186, 238, 308, 663
Hsp92I	GRCGYC	2 cut(s)	901, 920
Hsp92II	CATG	4 cut(s)	725, 814, 919, 1004
Kzo9I	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	2 cut(s)	437, 441
LweI	GCATC	1 cut(s)	1006
MaeI	CTAG	3 cut(s)	66, 573, 905
MaeIII	GTNAC	2 cut(s)	617, 716
MalI	GATC	8 cut(s)	72, 90, 103, 145, 688, 710, 938, 1007
MboI	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
MflI	RGATCY	1 cut(s)	1005
MhlI	GDGCHC	2 cut(s)	824, 1029
MluCI	AATT	3 cut(s)	57, 218, 261
MmeI	TCCRAC	1 cut(s)	153
MseI	TTAA	2 cut(s)	168, 413
MslI	CAYNNNNRTG	1 cut(s)	778
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	2 cut(s)	609, 713
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	609, 713
MwoI	GCNNNNNNNGC	2 cut(s)	898, 994
NcoI	CCATGG	1 cut(s)	810
NdeII	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
NlaIII	CATG	4 cut(s)	725, 814, 919, 1004
NlaIV	GGNNCC	1 cut(s)	552
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	1 cut(s)	716
OliI	CACNNNNGTG	1 cut(s)	778
PagI	TCATGA	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	1035
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	226, 278, 670
Pfl23II	CGTACG	1 cut(s)	1039
PflMI	CCANNNNNTGG	1 cut(s)	811
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	427, 456, 894
Psp6I	CCWGG	2 cut(s)	607, 711
PspEI	GGTNACC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	607, 711
PspLI	CGTACG	1 cut(s)	1039
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	1005
RsaI	GTAC	3 cut(s)	179, 968, 1041
RsaNI	GTAC	3 cut(s)	178, 967, 1040
RseI	CAYNNNNRTG	1 cut(s)	778
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	168, 413
SatI	GCNGC	3 cut(s)	426, 455, 893
Sau3AI	GATC	8 cut(s)	70, 88, 101, 143, 686, 708, 936, 1005
Sau96I	GGNCC	1 cut(s)	582
ScaI	AGTACT	1 cut(s)	968
ScrFI	CCNGG	2 cut(s)	609, 713
SduI	GDGCHC	2 cut(s)	824, 1029
SfaNI	GCATC	1 cut(s)	1006
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	778
Sse9I	AATT	3 cut(s)	57, 218, 261
SseBI	AGGCCT	1 cut(s)	1035
SsiI	CCGC	2 cut(s)	295, 893
SspMI	CTAG	3 cut(s)	66, 573, 905
StuI	AGGCCT	1 cut(s)	1035
StyD4I	CCNGG	2 cut(s)	607, 711
StyI	CCWWGG	4 cut(s)	561, 810, 825, 957
TaaI	ACNGT	5 cut(s)	411, 491, 510, 777, 952
TaqI	TCGA	3 cut(s)	142, 286, 442
TasI	AATT	3 cut(s)	57, 218, 261
TatI	WGTACW	1 cut(s)	966
TauI	GCSGC	1 cut(s)	895
TfiI	GAWTC	3 cut(s)	226, 278, 670
Tru1I	TTAA	2 cut(s)	168, 413
Tru9I	TTAA	2 cut(s)	168, 413
TscAI	CASTG	3 cut(s)	496, 782, 957
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	425, 454
Tsp45I	GTSAC	1 cut(s)	716
TspGWI	ACGGA	1 cut(s)	1057
TspRI	CASTG	3 cut(s)	496, 782, 957
Van91I	CCANNNNNTGG	1 cut(s)	811
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	218
XmiI	GTMKAC	4 cut(s)	12, 286, 659, 741
XspI	CTAG	3 cut(s)	66, 573, 905
ZrmI	AGTACT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.