Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Reverse (-)

42829648 .. 42832422

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGCCGTACGACGTCCCACCGCCATCGCTGATATTTACTTCGGCAAAGCCTGCCGGCATGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAATGGTTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTTTGCTAGGCAAAGGACCGGTAGAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTGGTAAATCTTCACAGTGGTGTCATAAGAACTTTGTAAACTACCAAGCCATGATGGTCTCCTTAACCATTCTATTGTGGTTCCATCCTCAGCCATCAATGATGTGTATTGACATGAAATGCTTCAAACTGTTCCAGATTCGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

166

Amino Acids

18.94

Weight (kDa)

9.26

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	2 cut(s)	218, 330
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	125, 475
AjnI	CCWGG	2 cut(s)	196, 300
AleI	CACNNNNGTG	1 cut(s)	367
AluBI	AGCT	2 cut(s)	182, 495
AluI	AGCT	2 cut(s)	182, 495
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	492
AsiGI	ACCGGT	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	139
BbvCI	CCTCAGC	2 cut(s)	252, 438
BccI	CCATC	4 cut(s)	34, 397, 441, 451
BciT130I	CCWGG	2 cut(s)	198, 302
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	198, 302
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	141, 431
BmrFI	CCNGG	2 cut(s)	198, 302
Bpu10I	CCTNAGC	2 cut(s)	252, 438
BsaHI	GRCGYC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	150, 197, 301
BsaWI	WCCGGW	1 cut(s)	173
Bse118I	RCCGGY	2 cut(s)	56, 173
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	198, 302
BseDI	CCNNGG	3 cut(s)	150, 197, 301
BseGI	GGATG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	243, 452
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	139
BshTI	ACCGGT	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	57, 174
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	2
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	275, 297
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	2 cut(s)	244, 451
BspLI	GGNNCC	2 cut(s)	141, 431
BspPI	GGATC	1 cut(s)	292
BspT107I	GGYRCC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	56, 173
BssAI	RCCGGY	2 cut(s)	56, 173
BssECI	CCNNGG	3 cut(s)	150, 197, 301
BssMI	GATC	2 cut(s)	275, 297
BssNAI	GTATAC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	198, 302
Bst4CI	ACNGT	3 cut(s)	80, 366, 480
Bst6I	CTCTTC	2 cut(s)	181, 219
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	54, 58
BstDEI	CTNAG	2 cut(s)	252, 438
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	2 cut(s)	278, 300
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	275, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	198, 302
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	196, 300
BstZ17I	GTATAC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	85, 371
Cac8I	GCNNGC	2 cut(s)	54, 58
Cfr10I	RCCGGY	2 cut(s)	56, 173
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	10
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	4 cut(s)	61, 311, 400, 463
CviJI	RGCY	8 cut(s)	52, 155, 182, 196, 214, 398, 442, 495
CviKI_1	RGCY	8 cut(s)	52, 155, 182, 196, 214, 398, 442, 495
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	252, 438
DpnI	GATC	2 cut(s)	277, 299
DpnII	GATC	2 cut(s)	275, 297
Eam1104I	CTCTTC	2 cut(s)	181, 219
EarI	CTCTTC	2 cut(s)	181, 219
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	196, 300
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	64, 314, 403, 466
FaiI	YATR	8 cut(s)	62, 69, 105, 219, 312, 375, 401, 464
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	4 cut(s)	60, 310, 399, 462
FblI	GTMKAC	2 cut(s)	218, 330
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	2 cut(s)	57, 174
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	4 cut(s)	64, 314, 403, 466
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	259, 487
HpaII	CCGG	2 cut(s)	57, 174
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	4 cut(s)	76, 219, 331, 388
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	263, 484
Hpy8I	GTNNAC	4 cut(s)	76, 219, 331, 388
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4III	ACNGT	3 cut(s)	80, 366, 480
HpyCH4IV	ACGT	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	252, 438
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	64, 314, 403, 466
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	275, 297
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	206, 305
MalI	GATC	2 cut(s)	277, 299
MboI	GATC	2 cut(s)	275, 297
MboII	GAAGA	4 cut(s)	198, 236, 335, 351
MnlI	CCTC	2 cut(s)	247, 447
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	2 cut(s)	57, 174
MspR9I	CCNGG	2 cut(s)	198, 302
MvaI	CCWGG	2 cut(s)	198, 302
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	2 cut(s)	275, 297
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	64, 314, 403, 466
NlaIV	GGNNCC	2 cut(s)	141, 431
NmuCI	GTSAC	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	367
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	259, 487
Pfl23II	CGTACG	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	494
Psp6I	CCWGG	2 cut(s)	196, 300
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	196, 300
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	141, 431
PspPI	GGNCC	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	2 cut(s)	275, 297
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	198, 302
SetI	ASST	3 cut(s)	18, 184, 497
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	367
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	196, 300
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	80, 366, 480
TaiI	ACGT	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	259, 487
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	2 cut(s)	85, 371
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	492
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	85, 371
VpaK11BI	GGWCC	1 cut(s)	171
XmiI	GTMKAC	2 cut(s)	218, 330
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	1 cut(s)	162
ZraI	GACGTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.