ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0346701 |
| rosa_laevigata | RLG00000010789 RLG00000014238 RLG00000025179 |
| rosa_multiflora | Rmu_ssc0000456.1_g000023 |
| rosa_samantha | Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500 |
| rosa_wichuraiana | Rw6G017400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 277 |
| AccI | GTMKAC | 1 cut(s) | 356 |
| AciI | CCGC | 1 cut(s) | 143 |
| AclWI | GGATC | 1 cut(s) | 430 |
| AcuI | CTGAAG | 1 cut(s) | 28 |
| AgeI | ACCGGT | 1 cut(s) | 311 |
| AgsI | TTSAA | 5 cut(s) | 102, 138, 166, 263, 547 |
| AjnI | CCWGG | 2 cut(s) | 334, 438 |
| AluBI | AGCT | 2 cut(s) | 320, 567 |
| AluI | AGCT | 2 cut(s) | 320, 567 |
| Alw26I | GTCTC | 1 cut(s) | 484 |
| AlwI | GGATC | 1 cut(s) | 430 |
| AoxI | GGCC | 1 cut(s) | 332 |
| ApeKI | GCWGC | 2 cut(s) | 181, 564 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 437, 469 |
| AsiGI | ACCGGT | 1 cut(s) | 311 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 542 |
| AspLEI | GCGC | 1 cut(s) | 174 |
| AspS9I | GGNCC | 1 cut(s) | 309 |
| AsuHPI | GGTGA | 1 cut(s) | 455 |
| AvaII | GGWCC | 1 cut(s) | 309 |
| BanI | GGYRCC | 1 cut(s) | 277 |
| BbvCI | CCTCAGC | 2 cut(s) | 390, 510 |
| BbvI | GCAGC | 1 cut(s) | 168 |
| BccI | CCATC | 5 cut(s) | 128, 184, 469, 513, 523 |
| BciT130I | CCWGG | 2 cut(s) | 336, 440 |
| BcoDI | GTCTC | 1 cut(s) | 484 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BisI | GCNGC | 2 cut(s) | 182, 565 |
| BlsI | GCNGC | 2 cut(s) | 183, 566 |
| Bme1390I | CCNGG | 2 cut(s) | 336, 440 |
| Bme18I | GGWCC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 1 cut(s) | 309 |
| BmiI | GGNNCC | 2 cut(s) | 279, 503 |
| BmrFI | CCNGG | 2 cut(s) | 336, 440 |
| Bpu10I | CCTNAGC | 2 cut(s) | 390, 510 |
| BsaI | GGTCTC | 1 cut(s) | 484 |
| BsaJI | CCNNGG | 3 cut(s) | 288, 335, 439 |
| BsaWI | WCCGGW | 1 cut(s) | 311 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| BseBI | CCWGG | 2 cut(s) | 336, 440 |
| BseDI | CCNNGG | 3 cut(s) | 288, 335, 439 |
| BseGI | GGATG | 1 cut(s) | 505 |
| BseMII | CTCAG | 2 cut(s) | 381, 524 |
| BseXI | GCAGC | 1 cut(s) | 168 |
| BshFI | GGCC | 1 cut(s) | 334 |
| BshNI | GGYRCC | 1 cut(s) | 277 |
| BshTI | ACCGGT | 1 cut(s) | 311 |
| BsiSI | CCGG | 1 cut(s) | 312 |
| BsmAI | GTCTC | 1 cut(s) | 484 |
| BsnI | GGCC | 1 cut(s) | 334 |
| Bso31I | GGTCTC | 1 cut(s) | 484 |
| Bsp143I | GATC | 2 cut(s) | 413, 435 |
| BspACI | CCGC | 1 cut(s) | 143 |
| BspANI | GGCC | 1 cut(s) | 334 |
| BspCNI | CTCAG | 2 cut(s) | 382, 523 |
| BspLI | GGNNCC | 2 cut(s) | 279, 503 |
| BspPI | GGATC | 1 cut(s) | 430 |
| BspT107I | GGYRCC | 1 cut(s) | 277 |
| BspTNI | GGTCTC | 1 cut(s) | 484 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssECI | CCNNGG | 3 cut(s) | 288, 335, 439 |
| BssMI | GATC | 2 cut(s) | 413, 435 |
| BssNAI | GTATAC | 1 cut(s) | 357 |
| BssT1I | CCWWGG | 1 cut(s) | 288 |
| Bst1107I | GTATAC | 1 cut(s) | 357 |
| Bst2UI | CCWGG | 2 cut(s) | 336, 440 |
| Bst4CI | ACNGT | 3 cut(s) | 218, 237, 552 |
| Bst6I | CTCTTC | 2 cut(s) | 319, 357 |
| BstDEI | CTNAG | 2 cut(s) | 390, 510 |
| BstEII | GGTNACC | 1 cut(s) | 443 |
| BstF5I | GGATG | 1 cut(s) | 505 |
| BstHHI | GCGC | 1 cut(s) | 174 |
| BstKTI | GATC | 2 cut(s) | 416, 438 |
| BstMAI | GTCTC | 1 cut(s) | 484 |
| BstMBI | GATC | 2 cut(s) | 413, 435 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 178 |
| BstNI | CCWGG | 2 cut(s) | 336, 440 |
| BstPI | GGTNACC | 1 cut(s) | 443 |
| BstSCI | CCNGG | 2 cut(s) | 334, 438 |
| BstV1I | GCAGC | 1 cut(s) | 168 |
| BstZ17I | GTATAC | 1 cut(s) | 357 |
| BsuRI | GGCC | 1 cut(s) | 334 |
| BtgZI | GCGATG | 1 cut(s) | 162 |
| BtsCI | GGATG | 1 cut(s) | 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 223 |
| CfoI | GCGC | 1 cut(s) | 174 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 1 cut(s) | 309 |
| CspAI | ACCGGT | 1 cut(s) | 311 |
| CviAII | CATG | 2 cut(s) | 472, 535 |
| CviJI | RGCY | 7 cut(s) | 293, 320, 334, 352, 470, 514, 567 |
| CviKI_1 | RGCY | 7 cut(s) | 293, 320, 334, 352, 470, 514, 567 |
| DdeI | CTNAG | 2 cut(s) | 390, 510 |
| DpnI | GATC | 2 cut(s) | 415, 437 |
| DpnII | GATC | 2 cut(s) | 413, 435 |
| Eam1104I | CTCTTC | 2 cut(s) | 319, 357 |
| EarI | CTCTTC | 2 cut(s) | 319, 357 |
| Eco130I | CCWWGG | 1 cut(s) | 288 |
| Eco31I | GGTCTC | 1 cut(s) | 484 |
| Eco32I | GATATC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 1 cut(s) | 309 |
| Eco57I | CTGAAG | 1 cut(s) | 28 |
| Eco91I | GGTNACC | 1 cut(s) | 443 |
| EcoO65I | GGTNACC | 1 cut(s) | 443 |
| EcoRII | CCWGG | 2 cut(s) | 334, 438 |
| EcoRV | GATATC | 1 cut(s) | 252 |
| EcoT14I | CCWWGG | 1 cut(s) | 288 |
| ErhI | CCWWGG | 1 cut(s) | 288 |
| FaeI | CATG | 2 cut(s) | 475, 538 |
| FaiI | YATR | 8 cut(s) | 10, 25, 207, 243, 357, 450, 473, 536 |
| FatI | CATG | 2 cut(s) | 471, 534 |
| FauI | CCCGC | 1 cut(s) | 150 |
| FblI | GTMKAC | 1 cut(s) | 356 |
| Fnu4HI | GCNGC | 2 cut(s) | 182, 565 |
| FokI | GGATG | 1 cut(s) | 492 |
| Fsp4HI | GCNGC | 2 cut(s) | 182, 565 |
| FspBI | CTAG | 1 cut(s) | 300 |
| GlaI | GCGC | 1 cut(s) | 173 |
| GluI | GCNGC | 2 cut(s) | 182, 565 |
| HaeIII | GGCC | 1 cut(s) | 334 |
| HapII | CCGG | 1 cut(s) | 312 |
| HhaI | GCGC | 1 cut(s) | 174 |
| Hin1II | CATG | 2 cut(s) | 475, 538 |
| Hin6I | GCGC | 1 cut(s) | 172 |
| HinP1I | GCGC | 1 cut(s) | 172 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HinfI | GANTC | 2 cut(s) | 397, 559 |
| HpaII | CCGG | 1 cut(s) | 312 |
| HphI | GGTGA | 1 cut(s) | 455 |
| Hpy166II | GTNNAC | 3 cut(s) | 214, 357, 460 |
| Hpy188I | TCNGA | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 401, 556 |
| Hpy8I | GTNNAC | 3 cut(s) | 214, 357, 460 |
| HpyAV | CCTTC | 1 cut(s) | 138 |
| HpyCH4III | ACNGT | 3 cut(s) | 218, 237, 552 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 178 |
| HpyF3I | CTNAG | 2 cut(s) | 390, 510 |
| Hsp92II | CATG | 2 cut(s) | 475, 538 |
| HspAI | GCGC | 1 cut(s) | 172 |
| Kzo9I | GATC | 2 cut(s) | 413, 435 |
| Lsp1109I | GCAGC | 1 cut(s) | 168 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeIII | GTNAC | 2 cut(s) | 344, 443 |
| MalI | GATC | 2 cut(s) | 415, 437 |
| MboI | GATC | 2 cut(s) | 413, 435 |
| MboII | GAAGA | 2 cut(s) | 336, 374 |
| MnlI | CCTC | 2 cut(s) | 385, 519 |
| MroXI | GAANNNNTTC | 1 cut(s) | 542 |
| MseI | TTAA | 1 cut(s) | 485 |
| MspA1I | CMGCKG | 1 cut(s) | 567 |
| MspI | CCGG | 1 cut(s) | 312 |
| MspR9I | CCNGG | 2 cut(s) | 336, 440 |
| MvaI | CCWGG | 2 cut(s) | 336, 440 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 178 |
| NdeII | GATC | 2 cut(s) | 413, 435 |
| NlaIII | CATG | 2 cut(s) | 475, 538 |
| NlaIV | GGNNCC | 2 cut(s) | 279, 503 |
| NmuCI | GTSAC | 1 cut(s) | 443 |
| PdmI | GAANNNNTTC | 1 cut(s) | 542 |
| PfeI | GAWTC | 2 cut(s) | 397, 559 |
| PinAI | ACCGGT | 1 cut(s) | 311 |
| PkrI | GCNGC | 2 cut(s) | 183, 566 |
| Psp6I | CCWGG | 2 cut(s) | 334, 438 |
| PspEI | GGTNACC | 1 cut(s) | 443 |
| PspGI | CCWGG | 2 cut(s) | 334, 438 |
| PspN4I | GGNNCC | 2 cut(s) | 279, 503 |
| PspPI | GGNCC | 1 cut(s) | 309 |
| PvuII | CAGCTG | 1 cut(s) | 567 |
| SaqAI | TTAA | 1 cut(s) | 485 |
| SatI | GCNGC | 2 cut(s) | 182, 565 |
| Sau3AI | GATC | 2 cut(s) | 413, 435 |
| Sau96I | GGNCC | 1 cut(s) | 309 |
| ScrFI | CCNGG | 2 cut(s) | 336, 440 |
| SetI | ASST | 3 cut(s) | 18, 322, 569 |
| SinI | GGWCC | 1 cut(s) | 309 |
| SsiI | CCGC | 1 cut(s) | 143 |
| SspMI | CTAG | 1 cut(s) | 300 |
| StyD4I | CCNGG | 2 cut(s) | 334, 438 |
| StyI | CCWWGG | 1 cut(s) | 288 |
| TaaI | ACNGT | 3 cut(s) | 218, 237, 552 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TfiI | GAWTC | 2 cut(s) | 397, 559 |
| Tru1I | TTAA | 1 cut(s) | 485 |
| Tru9I | TTAA | 1 cut(s) | 485 |
| TscAI | CASTG | 1 cut(s) | 223 |
| TseFI | GTSAC | 1 cut(s) | 443 |
| TseI | GCWGC | 2 cut(s) | 181, 564 |
| Tsp45I | GTSAC | 1 cut(s) | 443 |
| TspDTI | ATGAA | 1 cut(s) | 551 |
| TspRI | CASTG | 1 cut(s) | 223 |
| VpaK11BI | GGWCC | 1 cut(s) | 309 |
| XmiI | GTMKAC | 1 cut(s) | 356 |
| XmnI | GAANNNNTTC | 1 cut(s) | 542 |
| XspI | CTAG | 1 cut(s) | 300 |