Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017418

Physical Location & Seq

Genomic Coordinates Forward (+)

53114013 .. 53115847

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG408500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGCGTGGTCTATGTTGTTGACAGTGGGTTCTCAAAGCAACGGTTCTATAACCCGATATCAGATATTGAAAATCTGGTAGTGGCACCAATATCCAAGGCTTTTGCTAGGCAAAGGACCGGTAGAGCTGGAAGAGTTCGGCCTGGGAAATGTTACAGGCTGTATACAGAAGAGTATTTTGTAAAGGAAATGTCTGCTGAGGGGATTCCAGAGATACAAAGATCAAATCTTGTTTCCTGTGTGATCCAGGGTGACCATGTGAGTTTCCTAAATGTCTACAAAGCATTTCTTCAGTCTGGTAAATCTTCACAGTGGTGTCATAAGAACTTTGTAAACTACCAAGCCATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_22 HA2 Helicase_C OB_NTP_bind

Protein Analysis

116

Amino Acids

13.24

Weight (kDa)

9.4

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017418)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346701
rosa_laevigata	RLG00000010789 RLG00000014238 RLG00000025179
rosa_multiflora	Rmu_ssc0000456.1_g000023
rosa_samantha	Rh1AG115600 Rh1BG408500 Rh2AG542900 Rh2BG567500 Rh2CG525400 Rh2CG537900 Rh5BG246500
rosa_wichuraiana	Rw6G017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	2 cut(s)	164, 276
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	275
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	142, 246
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	140
AsiGI	ACCGGT	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	144, 248
BfaI	CTAG	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	144, 248
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	144, 248
Bpu10I	CCTNAGC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	96, 143, 247
BsaWI	WCCGGW	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	144, 248
BseDI	CCNNGG	3 cut(s)	96, 143, 247
BseMII	CTCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	120
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	221, 243
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	96, 143, 247
BssMI	GATC	2 cut(s)	221, 243
BssNAI	GTATAC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	96
Bst1107I	GTATAC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	144, 248
Bst4CI	ACNGT	3 cut(s)	26, 45, 312
Bst6I	CTCTTC	2 cut(s)	127, 165
BstDEI	CTNAG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	224, 246
BstMBI	GATC	2 cut(s)	221, 243
BstNI	CCWGG	2 cut(s)	144, 248
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	142, 246
BstZ17I	GTATAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	31, 317
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	117
CspAI	ACCGGT	1 cut(s)	119
CviAII	CATG	2 cut(s)	257, 346
CviJI	RGCY	5 cut(s)	101, 128, 142, 160, 344
CviKI_1	RGCY	5 cut(s)	101, 128, 142, 160, 344
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	223, 245
DpnII	GATC	2 cut(s)	221, 243
Eam1104I	CTCTTC	2 cut(s)	127, 165
EarI	CTCTTC	2 cut(s)	127, 165
Eco130I	CCWWGG	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	142, 246
EcoRV	GATATC	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	260
FaiI	YATR	6 cut(s)	15, 51, 165, 258, 321, 347
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	1 cut(s)	256
FblI	GTMKAC	2 cut(s)	164, 276
FspBI	CTAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	4 cut(s)	22, 165, 277, 334
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	4 cut(s)	22, 165, 277, 334
HpyCH4III	ACNGT	3 cut(s)	26, 45, 312
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	221, 243
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	152, 251
MalI	GATC	2 cut(s)	223, 245
MboI	GATC	2 cut(s)	221, 243
MboII	GAAGA	4 cut(s)	144, 182, 281, 297
MnlI	CCTC	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	144, 248
MvaI	CCWGG	2 cut(s)	144, 248
NdeII	GATC	2 cut(s)	221, 243
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	142, 246
PspEI	GGTNACC	1 cut(s)	251
PspGI	CCWGG	2 cut(s)	142, 246
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	221, 243
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	144, 248
SetI	ASST	1 cut(s)	130
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	313
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	142, 246
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	26, 45, 312
TfiI	GAWTC	1 cut(s)	205
TscAI	CASTG	2 cut(s)	31, 317
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspRI	CASTG	2 cut(s)	31, 317
VpaK11BI	GGWCC	1 cut(s)	117
XmiI	GTMKAC	2 cut(s)	164, 276
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.