Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009764

Physical Location & Seq

Genomic Coordinates Reverse (-)

6465506 .. 6468981

Gene Structure 3476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAAGGAGATGATGAGTAAACATGATCAAGCCCTGAGCAACGGAACTAGTGCTGGTATTGTTGGTGCTGAGGCTGAGAGGGTTTCAAGCTCTAGAATTTCATCTCTGCTGGCCTCCACAGATCGTGATTATCTTCTTTCTCCATCTGGAAATCAGGTGAAAGTTGCTGATCTTGATGGGAAGATAATAGGGCTCTACTTCTCGGCCAATTGGTACCCGCCCTGCTGGAACTTCAACCAAGTCCTAGTTGGTATCTATAATCAGCTTAAGAACAGTAGCAGTACGGGGTCTAGCTTTGAGATTGTGTACATATCATCTGATGAAGACTCTGACGCCTTTAACACCTACCATGCTTGCATGCCGTGGCTGGCGATTCCGTTTTCGGATTTAGAGACCAAGAAAGCTCTGAACCGCAAGTTTGAGATAGAGGGAATTCCGAGCTTGGTTATTCTGCAACCTAGTGATGGTGATGGGGCTACGTTGCATGATGGAGTTGAGCTCATTTATCGCTATGGTGTCCAAGCCTTCCCTTTTACTAGACAGAGGCTGGAACAGTTGGAGGAGGAGGAGAAACAGAAGCATGAGAACCAGACCTTGACCAATCTACTAACAAACCACGACAGACACTATCTTCTGGGCCATCAGACGCCTAATCAGGTGCCTGTGGCCTCATTGGTAGGCAAGACAATTGGACTCTACTTCTCAGCTCAATGGTGCATTCCATGCTTTAATTTCACTCCTAGGCTAATCTCAATCTACAAGAAGATTAAAGAGCAAATGCTAGTAGGTGATCAACCACAAGATGGAGAGGACTTCGAGATAGTGTTTGTTTCAAGTGATCGTGACCGAACATCCTTTGAAGCCTACTTCAGCACCATGCCATGGCTGGCATTGCCTTTTGAGGATCCCAACATCAAAGAGCTTGTGAAGCATTTCGATGTCAAAGGTATTCCTTGTTTGGTAATTTTGGGGCCGGATGGTAAAACTGTCACCAGGCAGGGTAGAAATCTGATAAACTTGTACAAAGAAAATGCGTATCCCTTCACCGATGCGAAGTTGGAATTGCTGGAGAAGAAAATGGATGAAGAGGCGAAGAGCCTGCCGAGGTCGGTGTACCATGGAGGGCATAGGCATGAGCTGAACTTGGTGTCCGAAGGCAATGGAGGCGGACCCTTTATATGTTGTGACTGTGATGAACAGGGATGCGGTTGGGCTTATCAGTGTCTTGAATGTGGATATGAGGTGCACCCCAAGTGTGTCGCAGCTGCTACTGGTGCAGTCAATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

430

Amino Acids

47.99

Weight (kDa)

5.18

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_8	PF13905	60 - 155	4e-21	Thioredoxin-like
Thioredoxin_8	PF13905	227 - 328	1.6e-29	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009764)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38020
malus_domestica	MD08G1008400.v1.1 MD15G1007300.v1.1
prunus_persica	Prupe.1G360200_v2.0.a1 Prupe.1G360200_v2.0.a1
pyrus_communis	pycom08g00670 pycom15g00590
rosa_chinensis	RchiOBHm_Chr6g0303591
rosa_laevigata	RLG00000011070
rosa_multiflora	Rmu_co8467275.1_g000001 Rmu_ssc0000114.1_g000024
rosa_roxburghii	Rroxscaffold_7G00164600
rosa_rugosa	Rorug06G0322500 Rorug06G0322600 Rorug06G0322700 Rorug06G0322800
rosa_samantha	Rh6AG437000 Rh6BG466300 Rh6CG449100 Rh6DG435800
rosa_wichuraiana	Rw6G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	2 cut(s)	213, 658
AccB7I	CCANNNNNTGG	2 cut(s)	803, 882
AciI	CCGC	4 cut(s)	218, 412, 1167, 1206
AclWI	GGATC	2 cut(s)	899, 912
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	96, 432
AcuI	CTGAAG	1 cut(s)	853
AcyI	GRCGYC	2 cut(s)	333, 647
AfaI	GTAC	5 cut(s)	215, 283, 308, 1022, 1115
AfiI	CCNNNNNNNGG	3 cut(s)	464, 803, 882
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	5 cut(s)	87, 235, 834, 860, 1229
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	992
AloI	GAACNNNNNNTCC	2 cut(s)	1133, 1165
Alw21I	GWGCWC	2 cut(s)	501, 1248
Alw26I	GTCTC	1 cut(s)	386
Alw44I	GTGCAC	1 cut(s)	1244
AlwI	GGATC	2 cut(s)	899, 912
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	5 cut(s)	111, 204, 637, 666, 971
ApaLI	GTGCAC	1 cut(s)	1244
ApeKI	GCWGC	2 cut(s)	1262, 1265
ApoI	RAATTY	2 cut(s)	96, 432
Asp700I	GAANNNNTTC	1 cut(s)	932
Asp718I	GGTACC	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	740
AspS9I	GGNCC	3 cut(s)	637, 971, 1169
AsuHPI	GGTGA	5 cut(s)	169, 479, 800, 982, 1036
AvaII	GGWCC	1 cut(s)	1169
AvrII	CCTAGG	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	1248
BamHI	GGATCC	1 cut(s)	904
BanI	GGYRCC	2 cut(s)	213, 658
BanII	GRGCYC	2 cut(s)	195, 501
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	501, 1248
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	1252, 1274
BccI	CCATC	8 cut(s)	151, 170, 458, 464, 482, 648, 797, 971
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	1081, 1115
BciT130I	CCWGG	1 cut(s)	994
BciVI	GTATCC	1 cut(s)	1047
BclI	TGATCA	2 cut(s)	25, 790
BcoDI	GTCTC	1 cut(s)	386
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	8 cut(s)	48, 93, 245, 291, 459, 537, 741, 782
BfrI	CTTAAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	1047
BisI	GCNGC	2 cut(s)	1263, 1266
BlnI	CCTAGG	1 cut(s)	740
BlsI	GCNGC	2 cut(s)	1264, 1267
Bme1390I	CCNGG	1 cut(s)	994
Bme18I	GGWCC	1 cut(s)	1169
BmgT120I	GGNCC	3 cut(s)	637, 971, 1169
BmiI	GGNNCC	5 cut(s)	215, 660, 906, 972, 1171
BmrFI	CCNGG	1 cut(s)	994
BmsI	GCATC	2 cut(s)	1039, 1193
BpiI	GAAGAC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpmI	CTGGAG	1 cut(s)	1088
Bpu10I	CCTNAGC	2 cut(s)	35, 69
BsaAI	YACGTR	1 cut(s)	1287
BsaHI	GRCGYC	2 cut(s)	333, 647
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	5 cut(s)	362, 740, 881, 1103, 1117
Bsc4I	CCNNNNNNNGG	3 cut(s)	464, 803, 882
Bse1I	ACTGG	1 cut(s)	1276
Bse3DI	GCAATG	2 cut(s)	890, 1165
BseBI	CCWGG	1 cut(s)	994
BseDI	CCNNGG	5 cut(s)	362, 740, 881, 1103, 1117
BseGI	GGATG	4 cut(s)	851, 982, 1087, 1208
BseLI	CCNNNNNNNGG	3 cut(s)	464, 803, 882
BseMI	GCAATG	2 cut(s)	890, 1165
BseMII	CTCAG	4 cut(s)	26, 60, 66, 717
BseNI	ACTGG	1 cut(s)	1276
BseRI	GAGGAG	3 cut(s)	575, 578, 581
BseSI	GKGCMC	1 cut(s)	1248
BseXI	GCAGC	2 cut(s)	1252, 1274
BshFI	GGCC	5 cut(s)	113, 206, 639, 668, 973
BshNI	GGYRCC	2 cut(s)	213, 658
BsiHKAI	GWGCWC	2 cut(s)	501, 1248
BsiSI	CCGG	1 cut(s)	974
BslI	CCNNNNNNNGG	3 cut(s)	464, 803, 882
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	5 cut(s)	113, 206, 639, 668, 973
Bso31I	GGTCTC	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	195, 501, 1248
Bsp1407I	TGTACA	2 cut(s)	306, 1020
Bsp143I	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
Bsp19I	CCATGG	2 cut(s)	881, 1117
BspACI	CCGC	4 cut(s)	218, 412, 1167, 1206
BspANI	GGCC	5 cut(s)	113, 206, 639, 668, 973
BspCNI	CTCAG	4 cut(s)	27, 61, 67, 716
BspLI	GGNNCC	5 cut(s)	215, 660, 906, 972, 1171
BspPI	GGATC	2 cut(s)	899, 912
BspQI	GCTCTTC	1 cut(s)	1088
BspT107I	GGYRCC	2 cut(s)	213, 658
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	2 cut(s)	890, 1165
BsrGI	TGTACA	2 cut(s)	306, 1020
BsrI	ACTGG	1 cut(s)	1276
BssECI	CCNNGG	5 cut(s)	362, 740, 881, 1103, 1117
BssMI	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
BssNI	GRCGYC	2 cut(s)	333, 647
BssT1I	CCWWGG	3 cut(s)	740, 881, 1117
Bst2UI	CCWGG	1 cut(s)	994
Bst4CI	ACNGT	4 cut(s)	275, 555, 988, 1190
Bst6I	CTCTTC	2 cut(s)	1080, 1088
BstACI	GRCGYC	2 cut(s)	333, 647
BstAFI	CTTAAG	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstAUI	TGTACA	2 cut(s)	306, 1020
BstBAI	YACGTR	1 cut(s)	1287
BstC8I	GCNNGC	6 cut(s)	111, 355, 359, 369, 888, 1100
BstDEI	CTNAG	4 cut(s)	35, 69, 75, 703
BstDSI	CCRYGG	3 cut(s)	362, 881, 1117
BstF5I	GGATG	4 cut(s)	851, 982, 1087, 1208
BstKTI	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
BstMWI	GCNNNNNNNGC	5 cut(s)	723, 892, 928, 1164, 1274
BstNI	CCWGG	1 cut(s)	994
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	992
BstSLI	GKGCMC	1 cut(s)	1248
BstV1I	GCAGC	2 cut(s)	1252, 1274
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BsuI	GTATCC	1 cut(s)	1047
BsuRI	GGCC	5 cut(s)	113, 206, 639, 668, 973
BtgI	CCRYGG	3 cut(s)	362, 881, 1117
BtsCI	GGATG	4 cut(s)	851, 982, 1087, 1208
BtsIMutI	CAGTG	1 cut(s)	1226
Cac8I	GCNNGC	6 cut(s)	111, 355, 359, 369, 888, 1100
CaiI	CAGNNNCTG	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	637, 971, 1169
CseI	GACGC	2 cut(s)	341, 655
Csp6I	GTAC	5 cut(s)	214, 282, 307, 1021, 1114
CviQI	GTAC	5 cut(s)	214, 282, 307, 1021, 1114
DdeI	CTNAG	4 cut(s)	35, 69, 75, 703
DpnI	GATC	6 cut(s)	27, 123, 171, 792, 840, 906
DpnII	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	1080, 1088
EarI	CTCTTC	2 cut(s)	1080, 1088
EciI	GGCGGA	1 cut(s)	1182
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	3 cut(s)	740, 881, 1117
Eco24I	GRGCYC	2 cut(s)	195, 501
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	1169
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	853
EcoICRI	GAGCTC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	992
EcoT14I	CCWWGG	3 cut(s)	740, 881, 1117
EcoT38I	GRGCYC	2 cut(s)	195, 501
ErhI	CCWWGG	3 cut(s)	740, 881, 1117
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	2 cut(s)	25, 790
Fnu4HI	GCNGC	2 cut(s)	1263, 1266
FokI	GGATG	4 cut(s)	838, 989, 1094, 1215
FriOI	GRGCYC	2 cut(s)	195, 501
Fsp4HI	GCNGC	2 cut(s)	1263, 1266
FspBI	CTAG	8 cut(s)	48, 93, 245, 291, 459, 537, 741, 782
GluI	GCNGC	2 cut(s)	1263, 1266
GsuI	CTGGAG	1 cut(s)	1088
HaeIII	GGCC	5 cut(s)	113, 206, 639, 668, 973
HapII	CCGG	1 cut(s)	974
HgaI	GACGC	2 cut(s)	341, 655
Hin1I	GRCGYC	2 cut(s)	333, 647
HinfI	GANTC	3 cut(s)	326, 373, 693
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	5 cut(s)	169, 479, 800, 982, 1036
Hpy166II	GTNNAC	4 cut(s)	20, 307, 1114, 1246
Hpy188I	TCNGA	8 cut(s)	319, 331, 385, 408, 438, 645, 1011, 1153
Hpy188III	TCNNGA	7 cut(s)	93, 125, 147, 173, 817, 842, 1226
Hpy8I	GTNNAC	4 cut(s)	20, 307, 1114, 1246
HpyAV	CCTTC	3 cut(s)	535, 1051, 1148
HpyCH4III	ACNGT	4 cut(s)	275, 555, 988, 1190
HpyCH4IV	ACGT	2 cut(s)	479, 1286
HpyCH4V	TGCA	6 cut(s)	357, 454, 484, 717, 1246, 1277
HpyF10VI	GCNNNNNNNGC	5 cut(s)	723, 892, 928, 1164, 1274
HpyF3I	CTNAG	4 cut(s)	35, 69, 75, 703
HpySE526I	ACGT	2 cut(s)	479, 1286
Hsp92I	GRCGYC	2 cut(s)	333, 647
KpnI	GGTACC	1 cut(s)	217
Ksp22I	TGATCA	2 cut(s)	25, 790
Kzo9I	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
LguI	GCTCTTC	1 cut(s)	1088
Lsp1109I	GCAGC	2 cut(s)	1252, 1274
LweI	GCATC	2 cut(s)	1039, 1193
MaeI	CTAG	8 cut(s)	48, 93, 245, 291, 459, 537, 741, 782
MaeII	ACGT	2 cut(s)	479, 1286
MaeIII	GTNAC	3 cut(s)	842, 988, 1184
MalI	GATC	6 cut(s)	27, 123, 171, 792, 840, 906
MboI	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
MboII	GAAGA	8 cut(s)	125, 193, 335, 623, 775, 1084, 1097, 1105
MfeI	CAATTG	2 cut(s)	208, 687
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	3 cut(s)	195, 501, 1248
MluCI	AATT	7 cut(s)	96, 208, 432, 687, 730, 963, 1061
MlyI	GAGTC	2 cut(s)	320, 687
MmeI	TCCRAC	2 cut(s)	537, 1038
MroXI	GAANNNNTTC	1 cut(s)	932
MseI	TTAA	4 cut(s)	267, 339, 729, 768
MslI	CAYNNNNRTG	2 cut(s)	936, 1131
MspA1I	CMGCKG	1 cut(s)	1265
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	994
MunI	CAATTG	2 cut(s)	208, 687
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	994
MwoI	GCNNNNNNNGC	5 cut(s)	723, 892, 928, 1164, 1274
NcoI	CCATGG	2 cut(s)	881, 1117
NdeII	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
NlaIV	GGNNCC	5 cut(s)	215, 660, 906, 972, 1171
NmeAIII	GCCGAG	2 cut(s)	182, 1128
NmuCI	GTSAC	3 cut(s)	842, 988, 1184
NspI	RCATGY	1 cut(s)	361
PaeI	GCATGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	1088
PctI	GAATGC	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	932
PfeI	GAWTC	1 cut(s)	373
PflMI	CCANNNNNTGG	2 cut(s)	803, 882
PkrI	GCNGC	2 cut(s)	1264, 1267
PleI	GAGTC	2 cut(s)	320, 687
PpsI	GAGTC	2 cut(s)	320, 687
Ppu21I	YACGTR	1 cut(s)	1287
Psp124BI	GAGCTC	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	992
PspGI	CCWGG	1 cut(s)	992
PspN4I	GGNNCC	5 cut(s)	215, 660, 906, 972, 1171
PspPI	GGNCC	3 cut(s)	637, 971, 1169
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	1265
RsaI	GTAC	5 cut(s)	215, 283, 308, 1022, 1115
RsaNI	GTAC	5 cut(s)	214, 282, 307, 1021, 1114
RseI	CAYNNNNRTG	2 cut(s)	936, 1131
SacI	GAGCTC	1 cut(s)	501
SapI	GCTCTTC	1 cut(s)	1088
SaqAI	TTAA	4 cut(s)	267, 339, 729, 768
SatI	GCNGC	2 cut(s)	1263, 1266
Sau3AI	GATC	6 cut(s)	25, 121, 169, 790, 838, 904
Sau96I	GGNCC	3 cut(s)	637, 971, 1169
SchI	GAGTC	2 cut(s)	320, 687
ScrFI	CCNGG	1 cut(s)	994
SduI	GDGCHC	3 cut(s)	195, 501, 1248
SfaNI	GCATC	2 cut(s)	1039, 1193
SinI	GGWCC	1 cut(s)	1169
SmiMI	CAYNNNNRTG	2 cut(s)	936, 1131
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	47
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	7 cut(s)	96, 208, 432, 687, 730, 963, 1061
SsiI	CCGC	4 cut(s)	218, 412, 1167, 1206
SspMI	CTAG	8 cut(s)	48, 93, 245, 291, 459, 537, 741, 782
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	992
StyI	CCWWGG	3 cut(s)	740, 881, 1117
TaaI	ACNGT	4 cut(s)	275, 555, 988, 1190
TaiI	ACGT	2 cut(s)	482, 1289
TaqI	TCGA	2 cut(s)	816, 936
TaqII	GACCGA	1 cut(s)	861
TasI	AATT	7 cut(s)	96, 208, 432, 687, 730, 963, 1061
TatI	WGTACW	2 cut(s)	306, 1020
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	4 cut(s)	267, 339, 729, 768
Tru9I	TTAA	4 cut(s)	267, 339, 729, 768
TscAI	CASTG	1 cut(s)	1226
TseFI	GTSAC	3 cut(s)	842, 988, 1184
TseI	GCWGC	2 cut(s)	1262, 1265
Tsp45I	GTSAC	3 cut(s)	842, 988, 1184
TspDTI	ATGAA	5 cut(s)	17, 90, 336, 1098, 1209
TspGWI	ACGGA	2 cut(s)	57, 366
TspRI	CASTG	1 cut(s)	1226
Van91I	CCANNNNNTGG	2 cut(s)	803, 882
Vha464I	CTTAAG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	1244
VpaK11BI	GGWCC	1 cut(s)	1169
XapI	RAATTY	2 cut(s)	96, 432
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	245, 883
XmaJI	CCTAGG	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	932
XspI	CTAG	8 cut(s)	48, 93, 245, 291, 459, 537, 741, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.