Rh6CG449100

Nucleoredoxin

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
62705499 .. 62709632
4134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG449100.1

Sequence Viewer

Length: 1281 bp
ATGATGAGTAACCATGATCAAGCCCTGAGCAACGGAACTAGTGCTGGTATTGTTGGTGCTGAGGCGGAGAGGGTTTCAAGCTCTAGAATTTCATCTCTGCTGGCCTCCACAGATCGTGATTATCTTCTTTCTCCATCTGGAAATCAGGTGAAAGTTGCTGATCTTGATGGGAAGATAATAGGGCTCTACTTCTCGGCCAATTGGTACCCGCCCTGCTGGAACTTCAACCAAGTCCTAGTTGGTATCTATAATCAGCTTAAGAACAGTAGCAGTACGGGGTCTAGCTTTGAGATTGTGTACATATCATCTGATGAAGACTCTGACGCCTTTAACACCTACCATGCTTGCATGCCGTGGCTGGCGATTCCGTTTTCGGATTTAGAGACCAAGAAAGCTCTGAACCGCAAGTTTGAGATAGAGGGAATTCCGAGCTTGGTTATTCTGCAACCTAGTGATGGTGATGGGGCTACGTTGCATGATGGAGTAGAGCTCATTTATCGCTATGGTGTCCAAGCCTTCCCTTTTACTAGACAGAGGCTGGAACAGTTGGAGGAGGAGGAGAAACAGAAGCATGAGAACCAGACCTTGACCAATCTACTAACGAACCACGACAGACACTATCTTCTGGGCCATCAGACGCCTAATCAGGTGCCTGTGGCCTCACTGGTTGGCAAGACAATTGGACTCTACTTCTCAGCTCAATGGTGCATTCCATGCGTTAATTTCACTCCTAGGCTAATCTCAATCTACAAGGAGATTAAAGAGCAAATGCTAGTAGGTGATCAACAACAAGATGGAGAGGACTTCGAGATAGTGTTTGTTTCAAGTGATCGTGACCGAACATCCTTTGAAGCCTACCTCAGCACCATGCCATGGCTGGCATTGCCTTTTGAGGATCCCAACATCAAAGAGCTTGTGAAGCATTTCGATGTCAAAGGTATTCCTTGTTTGGTAATTTTGGGGCCGGATGGTAAAACTGTCACCAGGCAGGGTAGAAATCTGATAAACTTGTACAAAGAAAATGCGTATCCCTTCACCGATGCGAAGTTGGAATTGCTGGAGAAGAAAATGGATGAAGAGGCGAAGAGCCTGCCGAGGTCGGTGTACCATGGAGGGCATAGGCATGAGCTGAATTTGGTGTCCGAAGGCAATGGGGGAGGACCCTTTATATGTTGTGACTGTGATGAACAAGGATGCGGTTGGGCTTATCAGTGTCTTGAATGTGGATATGAGGTGCACCCCAAGTGTGTCGCAGCCGCTACTGGTGCAGTCAATACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.54

Weight (kDa)

5.01

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_8 PF13905 57 - 152 4e-21 Thioredoxin-like
Thioredoxin_8 PF13905 224 - 325 2.2e-29 Thioredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 2 cut(s) 204, 649
AccB7I CCANNNNNTGG 1 cut(s) 873
AciI CCGC 5 cut(s) 65, 209, 403, 1197, 1257
AclWI GGATC 2 cut(s) 890, 903
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 3 cut(s) 87, 423, 1132
AcyI GRCGYC 2 cut(s) 324, 638
AfaI GTAC 5 cut(s) 206, 274, 299, 1013, 1106
AfiI CCNNNNNNNGG 2 cut(s) 455, 873
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 5 cut(s) 78, 226, 825, 851, 1220
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 983
AluBI AGCT 9 cut(s) 81, 256, 285, 395, 432, 490, 698, 913, 1129
AluI AGCT 9 cut(s) 81, 256, 285, 395, 432, 490, 698, 913, 1129
Alw21I GWGCWC 2 cut(s) 492, 1239
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 1235
AlwI GGATC 2 cut(s) 890, 903
AlwNI CAGNNNCTG 1 cut(s) 538
AoxI GGCC 5 cut(s) 102, 195, 628, 657, 962
ApaLI GTGCAC 1 cut(s) 1235
ApeKI GCWGC 1 cut(s) 1253
ApoI RAATTY 3 cut(s) 87, 423, 1132
Asp700I GAANNNNTTC 1 cut(s) 923
Asp718I GGTACC 1 cut(s) 204
AspA2I CCTAGG 1 cut(s) 731
AspS9I GGNCC 3 cut(s) 628, 962, 1160
AsuHPI GGTGA 5 cut(s) 160, 470, 791, 973, 1027
AvaII GGWCC 1 cut(s) 1160
AvrII CCTAGG 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 1239
BamHI GGATCC 1 cut(s) 895
BanI GGYRCC 2 cut(s) 204, 649
BanII GRGCYC 2 cut(s) 186, 492
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 492, 1239
BbvCI CCTCAGC 2 cut(s) 60, 860
BbvI GCAGC 1 cut(s) 1265
BccI CCATC 8 cut(s) 142, 161, 449, 455, 473, 639, 788, 962
BceAI ACGGC 1 cut(s) 337
BcgI CGANNNNNNTGC 2 cut(s) 1072, 1106
BciT130I CCWGG 1 cut(s) 985
BciVI GTATCC 1 cut(s) 1038
BclI TGATCA 2 cut(s) 16, 781
BcoDI GTCTC 1 cut(s) 377
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 8 cut(s) 39, 84, 236, 282, 450, 528, 732, 773
BfrI CTTAAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 1038
BisI GCNGC 2 cut(s) 1254, 1257
BlnI CCTAGG 1 cut(s) 731
BlsI GCNGC 2 cut(s) 1255, 1258
Bme1390I CCNGG 1 cut(s) 985
Bme18I GGWCC 1 cut(s) 1160
BmgT120I GGNCC 3 cut(s) 628, 962, 1160
BmiI GGNNCC 5 cut(s) 206, 651, 897, 963, 1162
BmrFI CCNGG 1 cut(s) 985
BmsI GCATC 2 cut(s) 1030, 1184
BpiI GAAGAC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 474, 506
BpmI CTGGAG 1 cut(s) 1079
Bpu10I CCTNAGC 3 cut(s) 26, 60, 860
BsaAI YACGTR 1 cut(s) 1278
BsaHI GRCGYC 2 cut(s) 324, 638
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 5 cut(s) 353, 731, 872, 1094, 1108
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 873
Bse1I ACTGG 2 cut(s) 669, 1267
Bse3DI GCAATG 2 cut(s) 881, 1156
BseBI CCWGG 1 cut(s) 985
BseDI CCNNGG 5 cut(s) 353, 731, 872, 1094, 1108
BseGI GGATG 4 cut(s) 842, 973, 1078, 1199
BseLI CCNNNNNNNGG 2 cut(s) 455, 873
BseMI GCAATG 2 cut(s) 881, 1156
BseMII CTCAG 4 cut(s) 17, 51, 708, 874
BseNI ACTGG 2 cut(s) 669, 1267
BseRI GAGGAG 3 cut(s) 566, 569, 572
BseSI GKGCMC 1 cut(s) 1239
BseXI GCAGC 1 cut(s) 1265
BshFI GGCC 5 cut(s) 104, 197, 630, 659, 964
BshNI GGYRCC 2 cut(s) 204, 649
BsiHKAI GWGCWC 2 cut(s) 492, 1239
BsiSI CCGG 1 cut(s) 965
BslI CCNNNNNNNGG 2 cut(s) 455, 873
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 5 cut(s) 104, 197, 630, 659, 964
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 3 cut(s) 186, 492, 1239
Bsp1407I TGTACA 2 cut(s) 297, 1011
Bsp143I GATC 6 cut(s) 16, 112, 160, 781, 829, 895
Bsp19I CCATGG 2 cut(s) 872, 1108
BspACI CCGC 5 cut(s) 65, 209, 403, 1197, 1257
BspANI GGCC 5 cut(s) 104, 197, 630, 659, 964
BspCNI CTCAG 4 cut(s) 18, 52, 707, 873
BspLI GGNNCC 5 cut(s) 206, 651, 897, 963, 1162
BspPI GGATC 2 cut(s) 890, 903
BspQI GCTCTTC 1 cut(s) 1079
BspT107I GGYRCC 2 cut(s) 204, 649
BspTI CTTAAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 881, 1156
BsrGI TGTACA 2 cut(s) 297, 1011
BsrI ACTGG 2 cut(s) 669, 1267
BssECI CCNNGG 5 cut(s) 353, 731, 872, 1094, 1108
BssMI GATC 6 cut(s) 16, 112, 160, 781, 829, 895
BssNI GRCGYC 2 cut(s) 324, 638
BssT1I CCWWGG 3 cut(s) 731, 872, 1108
Bst2UI CCWGG 1 cut(s) 985
Bst4CI ACNGT 4 cut(s) 266, 546, 979, 1181
Bst6I CTCTTC 2 cut(s) 1071, 1079
BstACI GRCGYC 2 cut(s) 324, 638
BstAFI CTTAAG 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 714
BstAUI TGTACA 2 cut(s) 297, 1011
BstBAI YACGTR 1 cut(s) 1278
BstC8I GCNNGC 6 cut(s) 102, 346, 350, 360, 879, 1091
BstDEI CTNAG 4 cut(s) 26, 60, 694, 860
BstDSI CCRYGG 3 cut(s) 353, 872, 1108
BstF5I GGATG 4 cut(s) 842, 973, 1078, 1199
BstKTI GATC 6 cut(s) 19, 115, 163, 784, 832, 898
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 6 cut(s) 16, 112, 160, 781, 829, 895
BstMWI GCNNNNNNNGC 4 cut(s) 714, 883, 919, 1265
BstNI CCWGG 1 cut(s) 985
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 983
BstSLI GKGCMC 1 cut(s) 1239
BstV1I GCAGC 1 cut(s) 1265
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 895
BstYI RGATCY 1 cut(s) 895
BsuI GTATCC 1 cut(s) 1038
BsuRI GGCC 5 cut(s) 104, 197, 630, 659, 964
BtgI CCRYGG 3 cut(s) 353, 872, 1108
BtsCI GGATG 4 cut(s) 842, 973, 1078, 1199
BtsIMutI CAGTG 2 cut(s) 662, 1217
Cac8I GCNNGC 6 cut(s) 102, 346, 350, 360, 879, 1091
CaiI CAGNNNCTG 1 cut(s) 538
Cfr13I GGNCC 3 cut(s) 628, 962, 1160
CseI GACGC 2 cut(s) 332, 646
Csp6I GTAC 5 cut(s) 205, 273, 298, 1012, 1105
CviQI GTAC 5 cut(s) 205, 273, 298, 1012, 1105
DdeI CTNAG 4 cut(s) 26, 60, 694, 860
DpnI GATC 6 cut(s) 18, 114, 162, 783, 831, 897
DpnII GATC 6 cut(s) 16, 112, 160, 781, 829, 895
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 1071, 1079
EarI CTCTTC 2 cut(s) 1071, 1079
EciI GGCGGA 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 3 cut(s) 731, 872, 1108
Eco24I GRGCYC 2 cut(s) 186, 492
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 1160
Eco53kI GAGCTC 1 cut(s) 490
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 1160
EcoRI GAATTC 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 983
EcoT14I CCWWGG 3 cut(s) 731, 872, 1108
EcoT38I GRGCYC 2 cut(s) 186, 492
ErhI CCWWGG 3 cut(s) 731, 872, 1108
FauI CCCGC 1 cut(s) 216
FbaI TGATCA 2 cut(s) 16, 781
Fnu4HI GCNGC 2 cut(s) 1254, 1257
FokI GGATG 4 cut(s) 829, 980, 1085, 1206
FriOI GRGCYC 2 cut(s) 186, 492
Fsp4HI GCNGC 2 cut(s) 1254, 1257
FspBI CTAG 8 cut(s) 39, 84, 236, 282, 450, 528, 732, 773
GluI GCNGC 2 cut(s) 1254, 1257
GsuI CTGGAG 1 cut(s) 1079
HaeIII GGCC 5 cut(s) 104, 197, 630, 659, 964
HapII CCGG 1 cut(s) 965
HgaI GACGC 2 cut(s) 332, 646
Hin1I GRCGYC 2 cut(s) 324, 638
HinfI GANTC 3 cut(s) 317, 364, 684
HpaII CCGG 1 cut(s) 965
HphI GGTGA 5 cut(s) 160, 470, 791, 973, 1027
Hpy166II GTNNAC 3 cut(s) 298, 1105, 1237
Hpy188I TCNGA 8 cut(s) 310, 322, 376, 399, 429, 636, 1002, 1144
Hpy188III TCNNGA 7 cut(s) 84, 116, 138, 164, 808, 833, 1217
Hpy8I GTNNAC 3 cut(s) 298, 1105, 1237
HpyAV CCTTC 3 cut(s) 526, 1042, 1139
HpyCH4III ACNGT 4 cut(s) 266, 546, 979, 1181
HpyCH4IV ACGT 2 cut(s) 470, 1277
HpyCH4V TGCA 6 cut(s) 348, 445, 475, 708, 1237, 1268
HpyF10VI GCNNNNNNNGC 4 cut(s) 714, 883, 919, 1265
HpyF3I CTNAG 4 cut(s) 26, 60, 694, 860
HpySE526I ACGT 2 cut(s) 470, 1277
Hsp92I GRCGYC 2 cut(s) 324, 638
KpnI GGTACC 1 cut(s) 208
Ksp22I TGATCA 2 cut(s) 16, 781
Kzo9I GATC 6 cut(s) 16, 112, 160, 781, 829, 895
LguI GCTCTTC 1 cut(s) 1079
Lsp1109I GCAGC 1 cut(s) 1265
LweI GCATC 2 cut(s) 1030, 1184
MaeI CTAG 8 cut(s) 39, 84, 236, 282, 450, 528, 732, 773
MaeII ACGT 2 cut(s) 470, 1277
MaeIII GTNAC 4 cut(s) 8, 833, 979, 1175
MalI GATC 6 cut(s) 18, 114, 162, 783, 831, 897
MboI GATC 6 cut(s) 16, 112, 160, 781, 829, 895
MboII GAAGA 7 cut(s) 116, 184, 326, 614, 1075, 1088, 1096
MfeI CAATTG 2 cut(s) 199, 678
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 3 cut(s) 186, 492, 1239
MluCI AATT 8 cut(s) 87, 199, 423, 678, 721, 954, 1052, 1132
MlyI GAGTC 2 cut(s) 311, 678
MmeI TCCRAC 2 cut(s) 528, 1029
MroXI GAANNNNTTC 1 cut(s) 923
MseI TTAA 4 cut(s) 258, 330, 720, 759
MslI CAYNNNNRTG 2 cut(s) 927, 1122
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 1 cut(s) 965
MspR9I CCNGG 1 cut(s) 985
MunI CAATTG 2 cut(s) 199, 678
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 985
MwoI GCNNNNNNNGC 4 cut(s) 714, 883, 919, 1265
NcoI CCATGG 2 cut(s) 872, 1108
NdeII GATC 6 cut(s) 16, 112, 160, 781, 829, 895
NlaIV GGNNCC 5 cut(s) 206, 651, 897, 963, 1162
NmeAIII GCCGAG 2 cut(s) 173, 1119
NmuCI GTSAC 3 cut(s) 833, 979, 1175
NspI RCATGY 1 cut(s) 352
PaeI GCATGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 1079
PctI GAATGC 1 cut(s) 708
PdmI GAANNNNTTC 1 cut(s) 923
PfeI GAWTC 1 cut(s) 364
PflMI CCANNNNNTGG 1 cut(s) 873
PkrI GCNGC 2 cut(s) 1255, 1258
PleI GAGTC 2 cut(s) 311, 678
PpsI GAGTC 2 cut(s) 311, 678
Ppu21I YACGTR 1 cut(s) 1278
PpuMI RGGWCCY 1 cut(s) 1160
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 1160
Psp6I CCWGG 1 cut(s) 983
PspGI CCWGG 1 cut(s) 983
PspN4I GGNNCC 5 cut(s) 206, 651, 897, 963, 1162
PspPI GGNCC 3 cut(s) 628, 962, 1160
PspPPI RGGWCCY 1 cut(s) 1160
PstNI CAGNNNCTG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 895
RsaI GTAC 5 cut(s) 206, 274, 299, 1013, 1106
RsaNI GTAC 5 cut(s) 205, 273, 298, 1012, 1105
RseI CAYNNNNRTG 2 cut(s) 927, 1122
SacI GAGCTC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 1079
SaqAI TTAA 4 cut(s) 258, 330, 720, 759
SatI GCNGC 2 cut(s) 1254, 1257
Sau3AI GATC 6 cut(s) 16, 112, 160, 781, 829, 895
Sau96I GGNCC 3 cut(s) 628, 962, 1160
SchI GAGTC 2 cut(s) 311, 678
ScrFI CCNGG 1 cut(s) 985
SduI GDGCHC 3 cut(s) 186, 492, 1239
SfaNI GCATC 2 cut(s) 1030, 1184
SinI GGWCC 1 cut(s) 1160
SmiMI CAYNNNNRTG 2 cut(s) 927, 1122
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 38
SphI GCATGC 1 cut(s) 352
Sse9I AATT 8 cut(s) 87, 199, 423, 678, 721, 954, 1052, 1132
SsiI CCGC 5 cut(s) 65, 209, 403, 1197, 1257
SspMI CTAG 8 cut(s) 39, 84, 236, 282, 450, 528, 732, 773
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 983
StyI CCWWGG 3 cut(s) 731, 872, 1108
TaaI ACNGT 4 cut(s) 266, 546, 979, 1181
TaiI ACGT 2 cut(s) 473, 1280
TaqI TCGA 2 cut(s) 807, 927
TaqII GACCGA 1 cut(s) 852
TasI AATT 8 cut(s) 87, 199, 423, 678, 721, 954, 1052, 1132
TatI WGTACW 2 cut(s) 297, 1011
TauI GCSGC 1 cut(s) 1259
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 4 cut(s) 258, 330, 720, 759
Tru9I TTAA 4 cut(s) 258, 330, 720, 759
TscAI CASTG 2 cut(s) 669, 1217
TseFI GTSAC 3 cut(s) 833, 979, 1175
TseI GCWGC 1 cut(s) 1253
Tsp45I GTSAC 3 cut(s) 833, 979, 1175
TspDTI ATGAA 4 cut(s) 81, 327, 1089, 1200
TspGWI ACGGA 2 cut(s) 48, 357
TspRI CASTG 2 cut(s) 669, 1217
Van91I CCANNNNNTGG 1 cut(s) 873
Vha464I CTTAAG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 1235
VpaK11BI GGWCC 1 cut(s) 1160
XapI RAATTY 3 cut(s) 87, 423, 1132
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 1 cut(s) 352
XcmI CCANNNNNNNNNTGG 2 cut(s) 236, 874
XmaJI CCTAGG 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 923
XspI CTAG 8 cut(s) 39, 84, 236, 282, 450, 528, 732, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.