Rh6DG435800

Nucleoredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009764
Physical Location & Seq
Forward (+)
61415066 .. 61419306
4241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG435800.1

Sequence Viewer

Length: 933 bp
ATGCCGTGGCTGGCGATTCCGTTTTCGGATTTAGAGACCAAGAAAGCTCTGAACCGCAAGTTTGAGATAGAGGGAATTCCGAGCTTGGTTATTCTGCAACCTAGTGATGGTGATGGGGCTACGTTGCATGATGGAGTTGAGCTCATTTATCGCTATGGTGTCCAAGCCTTCCCTTTTACTAGACAGAGGCTGGAACAGTTGGAGGAGGAGGAGAAACAGAAGCATGAGAACCAGACCTTGACCAATCTACTAACGAACCACGACAGACACTATCTTCTGGGCCATCAGACGCCTAATCAGGTGCCTGTGGCCTCATTGGTAGGCAAGACAATTGGACTCTACTTCTCAGCTCAATGGTGCATTCCATGCGTTAATTTCACTCCTAGGCTAATCTCAATCTACAAGAAGATTAAAGAGCAAATGCTAGTAGGTGATCAACAACAAGATGGAGAGGACTTCGAGATAGTGTTTGTTTCAAGTGATCGTGACCGAACATCCTTTGAAGCCTACTTCAGCACCATGCCATGGCTGGCATTGCCTTTTGAGGATCCCAACATCAAAGAGCTTGTGAAGCATTTCGATGTCAAAGGTATTCCTTGTTTGGTAATTTTGGGGCCGGATGGTAAAACTGTCACCAGGCAGGGTAGAAATCTGATAAACTTGTACAAAGAAAATGCGTATCCCTTCACCGATGCGAAGTTGGAATTGCTGGAGAAGAAAATGGATGAAGAGGCGAAGAGCCTGCCCAGGTCGGTGTACCATGGAGGGCATAGGCATGAGCTGAATTTGGTGTCCGAAGGCAATGGAGGAGGACCCTTTATATGTTGTGACTGTGATGAACAAGGATGCGGTTGGGCTTATCAGTGTCTTGAATGTGGATATGAGGTGCACCCCAAGTGTGTCGCAGCTGCTACTGGTGCAGTCAATACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Thioredoxin_8

Protein Analysis

310

Amino Acids

35.02

Weight (kDa)

5.33

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_8 PF13905 108 - 209 3e-30 Thioredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 525
AciI CCGC 2 cut(s) 55, 849
AclWI GGATC 2 cut(s) 542, 555
AcsI RAATTY 2 cut(s) 75, 784
AcuI CTGAAG 1 cut(s) 496
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 2 cut(s) 665, 758
AfiI CCNNNNNNNGG 2 cut(s) 107, 525
AgsI TTSAA 3 cut(s) 477, 503, 872
AjnI CCWGG 2 cut(s) 635, 746
AluBI AGCT 7 cut(s) 47, 84, 142, 350, 565, 781, 908
AluI AGCT 7 cut(s) 47, 84, 142, 350, 565, 781, 908
Alw21I GWGCWC 2 cut(s) 144, 891
Alw26I GTCTC 1 cut(s) 29
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 2 cut(s) 542, 555
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 3 cut(s) 280, 309, 614
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 2 cut(s) 905, 908
ApoI RAATTY 2 cut(s) 75, 784
Asp700I GAANNNNTTC 1 cut(s) 575
AspA2I CCTAGG 1 cut(s) 383
AspS9I GGNCC 3 cut(s) 280, 614, 812
AsuHPI GGTGA 4 cut(s) 122, 443, 625, 679
AvaII GGWCC 1 cut(s) 812
AvrII CCTAGG 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 891
BamHI GGATCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 144, 891
BbvI GCAGC 2 cut(s) 895, 917
BccI CCATC 6 cut(s) 101, 107, 125, 291, 440, 614
BcgI CGANNNNNNTGC 2 cut(s) 724, 758
BciT130I CCWGG 2 cut(s) 637, 748
BciVI GTATCC 1 cut(s) 690
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 4 cut(s) 102, 180, 384, 425
BfuI GTATCC 1 cut(s) 690
BisI GCNGC 2 cut(s) 906, 909
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 2 cut(s) 907, 910
Bme1390I CCNGG 2 cut(s) 637, 748
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 3 cut(s) 280, 614, 812
BmiI GGNNCC 4 cut(s) 303, 549, 615, 814
BmrFI CCNGG 2 cut(s) 637, 748
BmsI GCATC 2 cut(s) 682, 836
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 930
BsaHI GRCGYC 1 cut(s) 290
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 5 cut(s) 5, 383, 524, 746, 760
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 525
Bse1I ACTGG 1 cut(s) 919
Bse3DI GCAATG 2 cut(s) 533, 808
BseBI CCWGG 2 cut(s) 637, 748
BseDI CCNNGG 5 cut(s) 5, 383, 524, 746, 760
BseGI GGATG 4 cut(s) 494, 625, 730, 851
BseLI CCNNNNNNNGG 2 cut(s) 107, 525
BseMI GCAATG 2 cut(s) 533, 808
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 4 cut(s) 218, 221, 224, 822
BseSI GKGCMC 1 cut(s) 891
BseXI GCAGC 2 cut(s) 895, 917
BshFI GGCC 3 cut(s) 282, 311, 616
BshNI GGYRCC 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 144, 891
BsiSI CCGG 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 107, 525
BsmAI GTCTC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 3 cut(s) 282, 311, 616
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 144, 891
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 3 cut(s) 433, 481, 547
Bsp19I CCATGG 2 cut(s) 524, 760
BspACI CCGC 2 cut(s) 55, 849
BspANI GGCC 3 cut(s) 282, 311, 616
BspCNI CTCAG 1 cut(s) 359
BspLI GGNNCC 4 cut(s) 303, 549, 615, 814
BspPI GGATC 2 cut(s) 542, 555
BspQI GCTCTTC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 533, 808
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 1 cut(s) 919
BssECI CCNNGG 5 cut(s) 5, 383, 524, 746, 760
BssMI GATC 3 cut(s) 433, 481, 547
BssNI GRCGYC 1 cut(s) 290
BssT1I CCWWGG 3 cut(s) 383, 524, 760
Bst2UI CCWGG 2 cut(s) 637, 748
Bst4CI ACNGT 3 cut(s) 198, 631, 833
Bst6I CTCTTC 2 cut(s) 723, 731
BstACI GRCGYC 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 366
BstAUI TGTACA 1 cut(s) 663
BstBAI YACGTR 1 cut(s) 930
BstC8I GCNNGC 3 cut(s) 12, 531, 743
BstDEI CTNAG 1 cut(s) 346
BstDSI CCRYGG 3 cut(s) 5, 524, 760
BstF5I GGATG 4 cut(s) 494, 625, 730, 851
BstKTI GATC 3 cut(s) 436, 484, 550
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 433, 481, 547
BstMWI GCNNNNNNNGC 4 cut(s) 366, 535, 571, 917
BstNI CCWGG 2 cut(s) 637, 748
BstSCI CCNGG 2 cut(s) 635, 746
BstSLI GKGCMC 1 cut(s) 891
BstV1I GCAGC 2 cut(s) 895, 917
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 3 cut(s) 282, 311, 616
BtgI CCRYGG 3 cut(s) 5, 524, 760
BtsCI GGATG 4 cut(s) 494, 625, 730, 851
BtsIMutI CAGTG 1 cut(s) 869
Cac8I GCNNGC 3 cut(s) 12, 531, 743
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 280, 614, 812
CseI GACGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 664, 757
CviAII CATG 7 cut(s) 128, 224, 366, 520, 525, 761, 776
CviQI GTAC 2 cut(s) 664, 757
DdeI CTNAG 1 cut(s) 346
DpnI GATC 3 cut(s) 435, 483, 549
DpnII GATC 3 cut(s) 433, 481, 547
Eam1104I CTCTTC 2 cut(s) 723, 731
EarI CTCTTC 2 cut(s) 723, 731
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 3 cut(s) 383, 524, 760
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 812
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 635, 746
EcoT14I CCWWGG 3 cut(s) 383, 524, 760
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 3 cut(s) 383, 524, 760
FaeI CATG 7 cut(s) 131, 227, 369, 523, 528, 764, 779
FatI CATG 7 cut(s) 127, 223, 365, 519, 524, 760, 775
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 906, 909
FokI GGATG 4 cut(s) 481, 632, 737, 858
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 906, 909
FspBI CTAG 4 cut(s) 102, 180, 384, 425
GluI GCNGC 2 cut(s) 906, 909
GsuI CTGGAG 1 cut(s) 731
HaeIII GGCC 3 cut(s) 282, 311, 616
HapII CCGG 1 cut(s) 617
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 7 cut(s) 131, 227, 369, 523, 528, 764, 779
HinfI GANTC 2 cut(s) 16, 336
HpaII CCGG 1 cut(s) 617
HphI GGTGA 4 cut(s) 122, 443, 625, 679
Hpy166II GTNNAC 2 cut(s) 757, 889
Hpy188I TCNGA 6 cut(s) 28, 51, 81, 288, 654, 796
Hpy188III TCNNGA 3 cut(s) 460, 485, 869
Hpy8I GTNNAC 2 cut(s) 757, 889
HpyAV CCTTC 3 cut(s) 178, 694, 791
HpyCH4III ACNGT 3 cut(s) 198, 631, 833
HpyCH4IV ACGT 2 cut(s) 122, 929
HpyCH4V TGCA 5 cut(s) 97, 127, 360, 889, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 366, 535, 571, 917
HpyF3I CTNAG 1 cut(s) 346
HpySE526I ACGT 2 cut(s) 122, 929
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 7 cut(s) 131, 227, 369, 523, 528, 764, 779
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 433, 481, 547
LguI GCTCTTC 1 cut(s) 731
Lsp1109I GCAGC 2 cut(s) 895, 917
LweI GCATC 2 cut(s) 682, 836
MaeI CTAG 4 cut(s) 102, 180, 384, 425
MaeII ACGT 2 cut(s) 122, 929
MaeIII GTNAC 3 cut(s) 485, 631, 827
MalI GATC 3 cut(s) 435, 483, 549
MboI GATC 3 cut(s) 433, 481, 547
MboII GAAGA 5 cut(s) 266, 418, 727, 740, 748
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 144, 891
MluCI AATT 6 cut(s) 75, 330, 373, 606, 704, 784
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 180, 681
MroXI GAANNNNTTC 1 cut(s) 575
MseI TTAA 2 cut(s) 372, 411
MslI CAYNNNNRTG 2 cut(s) 579, 774
MspA1I CMGCKG 1 cut(s) 908
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 637, 748
MunI CAATTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 2 cut(s) 637, 748
MwoI GCNNNNNNNGC 4 cut(s) 366, 535, 571, 917
NcoI CCATGG 2 cut(s) 524, 760
NdeII GATC 3 cut(s) 433, 481, 547
NlaIII CATG 7 cut(s) 131, 227, 369, 523, 528, 764, 779
NlaIV GGNNCC 4 cut(s) 303, 549, 615, 814
NmuCI GTSAC 3 cut(s) 485, 631, 827
PciSI GCTCTTC 1 cut(s) 731
PctI GAATGC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 2 cut(s) 907, 910
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 930
PpuMI RGGWCCY 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 635, 746
PspGI CCWGG 2 cut(s) 635, 746
PspN4I GGNNCC 4 cut(s) 303, 549, 615, 814
PspPI GGNCC 3 cut(s) 280, 614, 812
PspPPI RGGWCCY 1 cut(s) 812
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 2 cut(s) 665, 758
RsaNI GTAC 2 cut(s) 664, 757
RseI CAYNNNNRTG 2 cut(s) 579, 774
SacI GAGCTC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 2 cut(s) 372, 411
SatI GCNGC 2 cut(s) 906, 909
Sau3AI GATC 3 cut(s) 433, 481, 547
Sau96I GGNCC 3 cut(s) 280, 614, 812
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 2 cut(s) 637, 748
SduI GDGCHC 2 cut(s) 144, 891
SfaNI GCATC 2 cut(s) 682, 836
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 2 cut(s) 579, 774
Sse9I AATT 6 cut(s) 75, 330, 373, 606, 704, 784
SsiI CCGC 2 cut(s) 55, 849
SspMI CTAG 4 cut(s) 102, 180, 384, 425
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 635, 746
StyI CCWWGG 3 cut(s) 383, 524, 760
TaaI ACNGT 3 cut(s) 198, 631, 833
TaiI ACGT 2 cut(s) 125, 932
TaqI TCGA 2 cut(s) 459, 579
TaqII GACCGA 1 cut(s) 504
TasI AATT 6 cut(s) 75, 330, 373, 606, 704, 784
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 372, 411
Tru9I TTAA 2 cut(s) 372, 411
TscAI CASTG 1 cut(s) 869
TseFI GTSAC 3 cut(s) 485, 631, 827
TseI GCWGC 2 cut(s) 905, 908
Tsp45I GTSAC 3 cut(s) 485, 631, 827
TspDTI ATGAA 2 cut(s) 741, 852
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 869
Van91I CCANNNNNTGG 1 cut(s) 525
VneI GTGCAC 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 812
XapI RAATTY 2 cut(s) 75, 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmaJI CCTAGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 4 cut(s) 102, 180, 384, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.