Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009764

Physical Location & Seq

Genomic Coordinates Reverse (-)

67502124 .. 67505956

Gene Structure 3833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG466300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGATGAAGGAGATGATGAGTAACCATGATCAAGCCCTGAGCAACGGAACTAGTGCTGGTATTGTTGGTGCTGAGGCTGAGAGGGTTTCAAGCTCTAGAATTTCATCTCTGCTGGCCTCCACAGATCGTGATTATCTTCTTTCTCCATCTGGAAATCAGGTGAAAGTTGCTGATCTTGATGGGAAGATAATAGGGCTCTACTTCTCAGCCAATTGGTACCCGCCCTGCTGGAACTTCAACCAAGTCCTAGTTGGTATCTATAATCAGCTTAAGAACAGTAGCATTACGGGGTCTAGCTTTGAGATTGTGTACATATCATCTGATGAAGACTCTGACGCCTTTAACACCTACCATGCTTGCATGCCGTGGCTGGCGATTCCGTTTTCGGATTTAGAGACCAAGAAAGCTCTGAACCGCAAGTTTGAGATAGAGGGAATTCCGAGCTTGGTTATTCTGCAACCTAGTGATGGTGATGGGGCTACGTTGCATGATGGAGTTGAGCTCATTTATCGCTATGGTGTCCAAGCCTTCCCTTTTACTAGACAGAGGCTGGAACAGTTGGAGGAGGAGGAGAAACAGAAGCATGAGAACCAGACCTTGACCAATCTACTAACGAACCACGACAGACACTATCTTCTGGGCCATCAGACGCCTAATCAGGTGCCTGTGGCCTCATTGGTAGGCAAGACAATTGGACTCTACTTCTCAGCTCAATGGTGCATTCCATGCGTTAATTTCACTCCTAGGCTAATCTCAATCTACAAGAAGATTAAAGAGCAAATGCCAGTAGGTGATCAACAACAAGATGGAGAGGACTTCGAGATAGTGTTTGTTTCAAGTGATCGTGACCGAACATCCTTTGAAGCCTACTTCAGCACCATGCCATGGCTGGCATTGCCTTTTGAGGATCCCAACATCAAAGAGCTTGTGAAGCATTTCGATGTCAAAGGTATTCCTTGTTTGGTAATTTTGGGGCCGGATGGTAAAACTGTCACCAGGCAGGGTAGAAATCTGATAAACTTGTACAAAGAAAATGCGTATCCCTTCACCGATGCGAAGTTGGAATTGCTGGAGAAGAAAATGGATGAAGAGGCGAAGAGCCTGCCCAGGTCGGTGTACCATGGAGGGCATAGGCATGAGCTGAATTTGGTGTCCGAAGGCAATGGAGGAGGACCCTTTATATGTTGTGACTGTGATGAACAAGGATGCGGTTGGGCTTATCAGTGTCTTGAATGTGGATATGAGGTGCACCCCAAGTGTGTCGCAGCTGCTACTGGTGCAGTCAATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

430

Amino Acids

48.1

Weight (kDa)

5.12

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_8	PF13905	61 - 156	4.6e-21	Thioredoxin-like
Thioredoxin_8	PF13905	228 - 329	5.6e-30	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009764)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38020
malus_domestica	MD08G1008400.v1.1 MD15G1007300.v1.1
prunus_persica	Prupe.1G360200_v2.0.a1 Prupe.1G360200_v2.0.a1
pyrus_communis	pycom08g00670 pycom15g00590
rosa_chinensis	RchiOBHm_Chr6g0303591
rosa_laevigata	RLG00000011070
rosa_multiflora	Rmu_co8467275.1_g000001 Rmu_ssc0000114.1_g000024
rosa_roxburghii	Rroxscaffold_7G00164600
rosa_rugosa	Rorug06G0322500 Rorug06G0322600 Rorug06G0322700 Rorug06G0322800
rosa_samantha	Rh6AG437000 Rh6BG466300 Rh6CG449100 Rh6DG435800
rosa_wichuraiana	Rw6G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	216
AccB1I	GGYRCC	2 cut(s)	216, 661
AccB7I	CCANNNNNTGG	1 cut(s)	885
AciI	CCGC	3 cut(s)	221, 415, 1209
AclWI	GGATC	2 cut(s)	902, 915
AcsI	RAATTY	3 cut(s)	99, 435, 1144
AcuI	CTGAAG	1 cut(s)	856
AcyI	GRCGYC	2 cut(s)	336, 650
AfaI	GTAC	4 cut(s)	218, 311, 1025, 1118
AfiI	CCNNNNNNNGG	2 cut(s)	467, 885
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	90, 238, 837, 863, 1232
AhlI	ACTAGT	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	995, 1106
Alw21I	GWGCWC	2 cut(s)	504, 1251
Alw26I	GTCTC	1 cut(s)	389
Alw44I	GTGCAC	1 cut(s)	1247
AlwI	GGATC	2 cut(s)	902, 915
AlwNI	CAGNNNCTG	1 cut(s)	550
AoxI	GGCC	4 cut(s)	114, 640, 669, 974
ApaLI	GTGCAC	1 cut(s)	1247
ApeKI	GCWGC	2 cut(s)	1265, 1268
ApoI	RAATTY	3 cut(s)	99, 435, 1144
Asp700I	GAANNNNTTC	1 cut(s)	935
Asp718I	GGTACC	1 cut(s)	216
AspA2I	CCTAGG	1 cut(s)	743
AspS9I	GGNCC	3 cut(s)	640, 974, 1172
AsuHPI	GGTGA	5 cut(s)	172, 482, 803, 985, 1039
AvaII	GGWCC	1 cut(s)	1172
AvrII	CCTAGG	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	1251
BamHI	GGATCC	1 cut(s)	907
BanI	GGYRCC	2 cut(s)	216, 661
BanII	GRGCYC	2 cut(s)	198, 504
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	2 cut(s)	504, 1251
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	1255, 1277
BccI	CCATC	8 cut(s)	154, 173, 461, 467, 485, 651, 800, 974
BceAI	ACGGC	1 cut(s)	349
BcgI	CGANNNNNNTGC	2 cut(s)	1084, 1118
BciT130I	CCWGG	2 cut(s)	997, 1108
BciVI	GTATCC	1 cut(s)	1050
BclI	TGATCA	2 cut(s)	28, 793
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	50
BfaI	CTAG	7 cut(s)	51, 96, 248, 294, 462, 540, 744
BfrI	CTTAAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	1050
BisI	GCNGC	2 cut(s)	1266, 1269
BlnI	CCTAGG	1 cut(s)	743
BlsI	GCNGC	2 cut(s)	1267, 1270
Bme1390I	CCNGG	2 cut(s)	997, 1108
Bme18I	GGWCC	1 cut(s)	1172
BmgT120I	GGNCC	3 cut(s)	640, 974, 1172
BmiI	GGNNCC	5 cut(s)	218, 663, 909, 975, 1174
BmrFI	CCNGG	2 cut(s)	997, 1108
BmsI	GCATC	2 cut(s)	1042, 1196
BpiI	GAAGAC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	1 cut(s)	1091
Bpu10I	CCTNAGC	2 cut(s)	38, 72
BsaAI	YACGTR	1 cut(s)	1290
BsaHI	GRCGYC	2 cut(s)	336, 650
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	5 cut(s)	365, 743, 884, 1106, 1120
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 885
Bse1I	ACTGG	2 cut(s)	785, 1279
Bse3DI	GCAATG	2 cut(s)	893, 1168
BseBI	CCWGG	2 cut(s)	997, 1108
BseDI	CCNNGG	5 cut(s)	365, 743, 884, 1106, 1120
BseGI	GGATG	4 cut(s)	854, 985, 1090, 1211
BseLI	CCNNNNNNNGG	2 cut(s)	467, 885
BseMI	GCAATG	2 cut(s)	893, 1168
BseMII	CTCAG	5 cut(s)	29, 63, 69, 219, 720
BseNI	ACTGG	2 cut(s)	785, 1279
BseRI	GAGGAG	4 cut(s)	578, 581, 584, 1182
BseSI	GKGCMC	1 cut(s)	1251
BseXI	GCAGC	2 cut(s)	1255, 1277
BshFI	GGCC	4 cut(s)	116, 642, 671, 976
BshNI	GGYRCC	2 cut(s)	216, 661
BsiHKAI	GWGCWC	2 cut(s)	504, 1251
BsiSI	CCGG	1 cut(s)	977
BslI	CCNNNNNNNGG	2 cut(s)	467, 885
BsmAI	GTCTC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	720
BsnI	GGCC	4 cut(s)	116, 642, 671, 976
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	3 cut(s)	198, 504, 1251
Bsp1407I	TGTACA	2 cut(s)	309, 1023
Bsp143I	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
Bsp19I	CCATGG	2 cut(s)	884, 1120
BspACI	CCGC	3 cut(s)	221, 415, 1209
BspANI	GGCC	4 cut(s)	116, 642, 671, 976
BspCNI	CTCAG	5 cut(s)	30, 64, 70, 218, 719
BspLI	GGNNCC	5 cut(s)	218, 663, 909, 975, 1174
BspPI	GGATC	2 cut(s)	902, 915
BspQI	GCTCTTC	1 cut(s)	1091
BspT107I	GGYRCC	2 cut(s)	216, 661
BspTI	CTTAAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	389
BsrDI	GCAATG	2 cut(s)	893, 1168
BsrGI	TGTACA	2 cut(s)	309, 1023
BsrI	ACTGG	2 cut(s)	785, 1279
BssECI	CCNNGG	5 cut(s)	365, 743, 884, 1106, 1120
BssMI	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
BssNI	GRCGYC	2 cut(s)	336, 650
BssT1I	CCWWGG	3 cut(s)	743, 884, 1120
Bst2UI	CCWGG	2 cut(s)	997, 1108
Bst4CI	ACNGT	4 cut(s)	278, 558, 991, 1193
Bst6I	CTCTTC	2 cut(s)	1083, 1091
BstACI	GRCGYC	2 cut(s)	336, 650
BstAFI	CTTAAG	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	726
BstAUI	TGTACA	2 cut(s)	309, 1023
BstBAI	YACGTR	1 cut(s)	1290
BstC8I	GCNNGC	6 cut(s)	114, 358, 362, 372, 891, 1103
BstDEI	CTNAG	5 cut(s)	38, 72, 78, 205, 706
BstDSI	CCRYGG	3 cut(s)	365, 884, 1120
BstF5I	GGATG	4 cut(s)	854, 985, 1090, 1211
BstKTI	GATC	6 cut(s)	31, 127, 175, 796, 844, 910
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	726, 895, 931, 1277
BstNI	CCWGG	2 cut(s)	997, 1108
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	995, 1106
BstSLI	GKGCMC	1 cut(s)	1251
BstV1I	GCAGC	2 cut(s)	1255, 1277
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BsuI	GTATCC	1 cut(s)	1050
BsuRI	GGCC	4 cut(s)	116, 642, 671, 976
BtgI	CCRYGG	3 cut(s)	365, 884, 1120
BtsCI	GGATG	4 cut(s)	854, 985, 1090, 1211
BtsIMutI	CAGTG	1 cut(s)	1229
Cac8I	GCNNGC	6 cut(s)	114, 358, 362, 372, 891, 1103
CaiI	CAGNNNCTG	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	640, 974, 1172
CseI	GACGC	2 cut(s)	344, 658
Csp6I	GTAC	4 cut(s)	217, 310, 1024, 1117
CviQI	GTAC	4 cut(s)	217, 310, 1024, 1117
DdeI	CTNAG	5 cut(s)	38, 72, 78, 205, 706
DpnI	GATC	6 cut(s)	30, 126, 174, 795, 843, 909
DpnII	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
Eam1104I	CTCTTC	2 cut(s)	1083, 1091
EarI	CTCTTC	2 cut(s)	1083, 1091
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	3 cut(s)	743, 884, 1120
Eco24I	GRGCYC	2 cut(s)	198, 504
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	1172
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	856
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	1172
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	995, 1106
EcoT14I	CCWWGG	3 cut(s)	743, 884, 1120
EcoT38I	GRGCYC	2 cut(s)	198, 504
ErhI	CCWWGG	3 cut(s)	743, 884, 1120
FauI	CCCGC	1 cut(s)	228
FbaI	TGATCA	2 cut(s)	28, 793
Fnu4HI	GCNGC	2 cut(s)	1266, 1269
FokI	GGATG	4 cut(s)	841, 992, 1097, 1218
FriOI	GRGCYC	2 cut(s)	198, 504
Fsp4HI	GCNGC	2 cut(s)	1266, 1269
FspBI	CTAG	7 cut(s)	51, 96, 248, 294, 462, 540, 744
GluI	GCNGC	2 cut(s)	1266, 1269
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	4 cut(s)	116, 642, 671, 976
HapII	CCGG	1 cut(s)	977
HgaI	GACGC	2 cut(s)	344, 658
Hin1I	GRCGYC	2 cut(s)	336, 650
HinfI	GANTC	3 cut(s)	329, 376, 696
HpaII	CCGG	1 cut(s)	977
HphI	GGTGA	5 cut(s)	172, 482, 803, 985, 1039
Hpy166II	GTNNAC	3 cut(s)	310, 1117, 1249
Hpy188I	TCNGA	8 cut(s)	322, 334, 388, 411, 441, 648, 1014, 1156
Hpy188III	TCNNGA	7 cut(s)	96, 128, 150, 176, 820, 845, 1229
Hpy8I	GTNNAC	3 cut(s)	310, 1117, 1249
HpyAV	CCTTC	3 cut(s)	538, 1054, 1151
HpyCH4III	ACNGT	4 cut(s)	278, 558, 991, 1193
HpyCH4IV	ACGT	2 cut(s)	482, 1289
HpyCH4V	TGCA	6 cut(s)	360, 457, 487, 720, 1249, 1280
HpyF10VI	GCNNNNNNNGC	4 cut(s)	726, 895, 931, 1277
HpyF3I	CTNAG	5 cut(s)	38, 72, 78, 205, 706
HpySE526I	ACGT	2 cut(s)	482, 1289
Hsp92I	GRCGYC	2 cut(s)	336, 650
KpnI	GGTACC	1 cut(s)	220
Ksp22I	TGATCA	2 cut(s)	28, 793
Kzo9I	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
LguI	GCTCTTC	1 cut(s)	1091
Lsp1109I	GCAGC	2 cut(s)	1255, 1277
LweI	GCATC	2 cut(s)	1042, 1196
MaeI	CTAG	7 cut(s)	51, 96, 248, 294, 462, 540, 744
MaeII	ACGT	2 cut(s)	482, 1289
MaeIII	GTNAC	4 cut(s)	20, 845, 991, 1187
MalI	GATC	6 cut(s)	30, 126, 174, 795, 843, 909
MboI	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
MboII	GAAGA	8 cut(s)	128, 196, 338, 626, 778, 1087, 1100, 1108
MfeI	CAATTG	2 cut(s)	211, 690
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	3 cut(s)	198, 504, 1251
MluCI	AATT	8 cut(s)	99, 211, 435, 690, 733, 966, 1064, 1144
MlyI	GAGTC	2 cut(s)	323, 690
MmeI	TCCRAC	2 cut(s)	540, 1041
MroXI	GAANNNNTTC	1 cut(s)	935
MseI	TTAA	4 cut(s)	270, 342, 732, 771
MslI	CAYNNNNRTG	2 cut(s)	939, 1134
MspA1I	CMGCKG	1 cut(s)	1268
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	997, 1108
MunI	CAATTG	2 cut(s)	211, 690
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	2 cut(s)	997, 1108
MwoI	GCNNNNNNNGC	4 cut(s)	726, 895, 931, 1277
NcoI	CCATGG	2 cut(s)	884, 1120
NdeII	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
NlaIV	GGNNCC	5 cut(s)	218, 663, 909, 975, 1174
NmuCI	GTSAC	3 cut(s)	845, 991, 1187
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	1091
PctI	GAATGC	1 cut(s)	720
PdmI	GAANNNNTTC	1 cut(s)	935
PfeI	GAWTC	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	885
PkrI	GCNGC	2 cut(s)	1267, 1270
PleI	GAGTC	2 cut(s)	323, 690
PpsI	GAGTC	2 cut(s)	323, 690
Ppu21I	YACGTR	1 cut(s)	1290
PpuMI	RGGWCCY	1 cut(s)	1172
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	1172
Psp6I	CCWGG	2 cut(s)	995, 1106
PspGI	CCWGG	2 cut(s)	995, 1106
PspN4I	GGNNCC	5 cut(s)	218, 663, 909, 975, 1174
PspPI	GGNCC	3 cut(s)	640, 974, 1172
PspPPI	RGGWCCY	1 cut(s)	1172
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	1268
RsaI	GTAC	4 cut(s)	218, 311, 1025, 1118
RsaNI	GTAC	4 cut(s)	217, 310, 1024, 1117
RseI	CAYNNNNRTG	2 cut(s)	939, 1134
SacI	GAGCTC	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	1091
SaqAI	TTAA	4 cut(s)	270, 342, 732, 771
SatI	GCNGC	2 cut(s)	1266, 1269
Sau3AI	GATC	6 cut(s)	28, 124, 172, 793, 841, 907
Sau96I	GGNCC	3 cut(s)	640, 974, 1172
SchI	GAGTC	2 cut(s)	323, 690
ScrFI	CCNGG	2 cut(s)	997, 1108
SduI	GDGCHC	3 cut(s)	198, 504, 1251
SfaNI	GCATC	2 cut(s)	1042, 1196
SinI	GGWCC	1 cut(s)	1172
SmiMI	CAYNNNNRTG	2 cut(s)	939, 1134
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	50
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	8 cut(s)	99, 211, 435, 690, 733, 966, 1064, 1144
SsiI	CCGC	3 cut(s)	221, 415, 1209
SspMI	CTAG	7 cut(s)	51, 96, 248, 294, 462, 540, 744
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	995, 1106
StyI	CCWWGG	3 cut(s)	743, 884, 1120
TaaI	ACNGT	4 cut(s)	278, 558, 991, 1193
TaiI	ACGT	2 cut(s)	485, 1292
TaqI	TCGA	2 cut(s)	819, 939
TaqII	GACCGA	1 cut(s)	864
TasI	AATT	8 cut(s)	99, 211, 435, 690, 733, 966, 1064, 1144
TatI	WGTACW	2 cut(s)	309, 1023
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	4 cut(s)	270, 342, 732, 771
Tru9I	TTAA	4 cut(s)	270, 342, 732, 771
TscAI	CASTG	1 cut(s)	1229
TseFI	GTSAC	3 cut(s)	845, 991, 1187
TseI	GCWGC	2 cut(s)	1265, 1268
Tsp45I	GTSAC	3 cut(s)	845, 991, 1187
TspDTI	ATGAA	5 cut(s)	20, 93, 339, 1101, 1212
TspGWI	ACGGA	2 cut(s)	60, 369
TspRI	CASTG	1 cut(s)	1229
Van91I	CCANNNNNTGG	1 cut(s)	885
Vha464I	CTTAAG	1 cut(s)	269
VneI	GTGCAC	1 cut(s)	1247
VpaK11BI	GGWCC	1 cut(s)	1172
XapI	RAATTY	3 cut(s)	99, 435, 1144
XbaI	TCTAGA	1 cut(s)	95
XceI	RCATGY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	2 cut(s)	248, 886
XmaJI	CCTAGG	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	935
XspI	CTAG	7 cut(s)	51, 96, 248, 294, 462, 540, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.