Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009764

Physical Location & Seq

Genomic Coordinates Reverse (-)

47409380 .. 47416910

Gene Structure 7531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5376 bp

ATGGCGACTGTGTCCCAAGCGGATTCTAGACGCATGTATTCTTGGTGGTGGGACAGCCACATAAGCCCAAAGAACTCGAGATGGCTGAAGGAAAATCTTACAGATATGGATGCCAAAGTCAAACACATGATCAAACTTATTGAAGAAGATGCAGATTCCTTTGCTAGAAGGGCAGAAATGTATTACAAAAAACGCCCAGAACTAATGAAATTGGTTGAAGAGTTCTACCGAGCATACCGTGCGTTAGCTGAACGATATGATCATGCAACTGGGGCACTGCGCCAGGCTCATCGAACCATGGCAGAGGCATTTCCCAACCAAGTTCCGTTTGTAGATGACTCGCCTGCAGGTTCTTCTGCTAGTGAGACTGATCCCCGAACACCTGAGATGCCAGCTCCTATACGAGCATTATTTGACCTTGATGAATTGCAAAAAGATGCTCTGGGACTCTCCTCCTCAACCCATTTCCATGCTCTCAAAAGGAATGGAGCTTTTGGTGAAGAATCTGACTCTGGAACCAGCCGAATTGGTTTGAAACAGCTGAATGATCTCTTTGGATCGGGAGAAGGAAGGGCGAAAAAGGGCCTCAACTTCCTTGATGCTGACGCAAAAGAACACAGCATGCAGAACAATGGCCATGATCTTAAAAATCGAGCCTTGTTGGGGGATGATCGAGTGGGCAAAGCAGAGACAGAAATATCAAACTTAAAGAAAGCTCTTGCTAAACTAGAAGCTGAAAAGGAAGCTGGCTTACTTCAGTACCAAGAGTGTTTAGAGAGAGTATCTAATTTGGGGTCTGAAGTCTCTCGTGCACAAGAGGATTCCAGGGGACTTAATGAACGAGCCAGTAAAGCTGAAGCTGAAGTTCAAACTACAAAGGAAGCACTTAACACATTAGAGGCTGAAAGGAAAGCTAGTCTTCTTCAGTATCAGGAGTGCTTGGACAAAATCTCTAATCTGGAAAGCATCATCTCTTGTGCCCAAAAGGATGCTGGAGAGCTAAATGATCGAGCTAGTAGAGCTGAATTTGCATCTGAATCTCTACAGAAAGATCTTGAAAGGGTGGCATCTGAGAAAGAAGCTGCACTTGCACAATACGAACGGTGTCTGGAGAATATATCAAATCTGGAGGACAAACTACTGCATGTTGAGGAGGATGCCAAGAAGATTAACAAGCGTGCTGTTAAAGCTGAACTCGAAGTTGAATCCTTGAAGCAAGCAATTGCCAATTTAACTGAAGAGAAGGAAGCTGCTGCTCTCCAGTACAAGCAATGCCTGGAAACAATATCTAATCTTGAGCATAAGATCTCTCATGCGGAGGAGGAGGCACTACGGCTACACTCTCAGATAGACGACGGGATTGTGAAGTTCAAGGATTCAGAAGAAAAGTGTCTTCTGCTGGTAAACTCAAATCAAAATCTGCAGTTGGAGTTGGAGTCTGTGGTGAAGCAAATGCAATCTCAAGGTGAAGAGCTTACAGAGAAGCAGAAGGAGTTGGGTAGACTTTGGGCTTGCATACAAGAAGAGCGGTTGCGATTTATGGAGGCTGAAACTGCTTTCCAGACACTGCAGCATTTGCATTCCCAGTCCCAGGAGGAACTTAGATCTCTTGTAGCTGAGCTCCAGAATAGAGATTTGATTCTGAAGGACATGGAAGCACGATGTCAGAGATTGGATGATGAAGTCCAGAAGGTGAAGGAGGAAAACAAGAGCCTAAGTGAGATCAATTTGTCTTCATCTGTTTCAATAAAAGATCTGCAAGGTGAGATCTTAATCTTGAGGGAGACGATTAAGAAACTTGAAGAGGAAGTTGAACTTCGAGTGGACCAAAGAAATGCTCTTCAGCAAGAGATATACTGTCTGAAAGAGGAACTCAGTGACCTGAACAAGAAACACCAAGCTATGCTAGAGCAGGTGGAGTCAGTTGGCTTGGATCCAGTGTGCATTGGGTCATCTGTGAAGGAGTTGCAAGATGAGAACTTACAGCTCAAACAAATATGTGAGGCTGATAAAAGTGAGAAAGTGGCGCTGTTGGAAAAGTTGGAAATCATGCAGAAACTTCGGGAGAAAAATGTTCTTTTGGAGAATTCCCTTTCTGATTTGAATGTTGAGTTAGAAGGGGTTAGAGGGAAGGTAAAGGAGTTGGAACAATCATGTCAGTCTCTTCTGGCAGAAAAAGGTACTCTTCTTGCTGAAAATGGCACTCTGATTTCCCAGTTGCAGTTTATGACTCAGAATTTAGAAAAATCATCAGAGAAGAACAAATTTTTGGAGAATTCTCTCTTTGATGCGAATGCTGAACTGGAAGGCTTGAGTGTAAAATCAAAGAGCTTAGAAGAATCATGCCTACTGCTTGGTAATGATAAGACTGGTCTGATCACTGAGAGAGAGAGTTTAATTTTGGAGTTGGGCAGTACTCGGCAAAGACTGGAAGATCTGGAAAAAGGATATGCAGAGATAGAAGAGAAACTCTCTGTTCTGGAGAAGGAAAGAGATTCTGCACTTTGTAAAGTGGAAGAGCTAAATGTATGCTTAGATTCTGAGAAGCAAATTCATGCCAGTTCTGTTGAGTTAAGGGAAACCCAGTTGGCTGAAATGGAACTGAAGATCTCTCATCTCCAAGCAGAAGGGATATGCAGGAAGAAAGAATTTGAAGAGGAACAAGACAAATCTGTTACTGCACAGATAGAAATCTTTGTCCTGCAGAAATGTGTAGAAGATCTGGAAGAGAAGAACTTATCCCTCATGATTGAGCATCAAAAACTTTTGGGGGCATCCGCAATGTCATTGAAGCTGATTTCTGTCCTAGAGCATGGCAAACTTGAACAACAGAAGGAAATTAAGTCATTGTTTGTGCAAATTAAAGCACTGAGAATGGGGCTGTATCAGGTGTTGAAGAATGTTGACATTGATGCAAACCTTGGGTGTGCAGAAAAGGATGAGCAAGACCAAGCACTCCTTAATCATATACTTGTCAAACTTCAAGACAAACAAAATTCTTTCTCTGAAAGTTGTGATGAAAACCAGCGGTTGCTTAATGAGAACTCTGTTCTCATAGCAATGCTTGCCCAAATGAAACTAGAGGCGGACTGTTGTATGAGGGAAAGAAACACTCTTGACCATGAGTTCAGGACCCAGTCTGAGAAGTTCTTGGTGTTGCAGAGTGGCGCCCAAAGACTTCGTGACATGAATGCAGAATTGAATTTGAAGGTAGTGGAGGGAGAACACAGAGAGGGAGTTTTGAGGACTGAAATAGATAATCTGCACGAGCAGTTGTTGGACTTGCAAAGCATTTACAAGAGTCTACAAAAAGAAAATTCCCAGATGGTTGAAGATAAAGGATCCTTGAAAAGGACGATCTTGAATTTGGAGGAAGAGGCGCGTAACCTAGAAGAGGATAAATGCGTCATGTTTGCTGAAACAATATATTATAGTAACCTCTCCCTTGTTTTCGATGATATTATTTCCCAAAAGCAACTGGAACTGGAAGAGCTCAGTCACAATTATGATGAACTTCATCTTGGCAATAATGACCTGAAAGAGAAGGTGAGAGTATTGGAGGGGCAGTTAGAAGTTATACAGATGGAAAACTTACATCTCAAGGAGTCATTAAATAAGTCGGAGGATGAGCTGAAATTGGTTAAATCTGTGAATGATCAATTGAATGGTGATATTGCAAATGCAAAGGATGGTTTGTCTCAAAAGGAAAATGAGCTTTTGGAAGCCGGGCAGGTCATAAATGAACTACAGAATGAGAAAAAAGAGCTGTATATACTGGTGGAGGATTTGACTAGTAAAAGTGATGATGCGAAGGTGGTGCTGGAAGATCAAGAGAAGCAAATTTTCAAACTACATGACGACAATGACCGTCATAGTAAAGAGATTGGATGCCTCCGTGAAGTGAATCAGAAGTTGGAGGTGGAACTATCGAAATTGCATGAAGAAGCTGAAAAAGGCAAAATTGAGGAGGAAAGGTTGATCAGTGAACTAAAAAGGGGAAGAGAAGAGATAGAAATGTGGGTGACTCACGCAGCCACCCTCTTTGGAGAACTGCAGATCTCCTCCATTCGTGAAACATTGTTTGAAGGAAAGATCCACGAGCTCATTGAAGCCTGTCAGATCCTTGAAGACAAAAGCGTTTCCAAAGGTCTGGAGAGTGAACAGATGAATGAAAGAGTCGGCACATTGGAACATGAAAATGGAGAGCTACTAGCTCAGTTGGCTGCCTATATTCCAGCTGTCATCTCTCTGAAGGAGTGTACAACAGCCCTTGAGAATCATTCACTTATTAACACCAGATGCTCAGAGGATGCCCTTCTGCAAGCTGAGAGCTCTAAAACGGATGGACATCAAATTGACACAGTGCCAGATGGCATTTCAGGACTGCAGGATTTACAAAGAAGAATCAAAGCTATTGAAAAGGCTATGGTAGAAAAGGAAAGCCATCTTACTGTCAATCAGGAAGGTAAACAATTTGGGGACAGGTTCGGTAGTGAGAAGCCTGAAATCTCTGAAGTGGGGAACGAAGTTCTGACGAAGGACATCATTCTCGATCAGATATCAGAGTGTTCATCCTATGGGGTAAGCAGGAGAGAAACCATAGAGCCTGATGCTCAGATGATGGAGTTATGGGAGACCGCTGACCAGGATGGCAGCATTGATTTGATGGTTGGCAAGGCCCAGAAGGCAACTACTGTACCGACTGACCACAGTCAGACTGAAGCTATAAAGAAACACAAGAATAAATATCCCTCTTCAGAATCATTGGTTGAGAAGGAATATAGCGTTGACAAATTAGAGATCTCTAAGAGATTCTCGGAGCCCCGTCAAGAAGGCAACAAGAGAAGGATTCTAGAAAGACTTGATTCTGACGTTCAAAAGTTGACAAACCTTCAAATTACCGTGGAAGACCTGAAGAAGAAGGTGGACATTACTGAGAAGACCAAAAAGGGCAAAGGTATTGAATTTGGTACTGTAAAAGAGCAGCTGGATGAAGCCGAAGAAGCCATCACTAGATTGTTTGATGCCAATAACAAATTGATGAAGAGTGTCGAAGATGAATTTGTGTCTCCTGATGGAGCTTCTGAGATAGTCCCAGATCACAGTGGGACTGTCAGCAGAAGGAGACTGTCCGAACAAGCAAAAAGAGGGTCAGAGAAAATCGGTCGATTGCAGTTGGAGGTACAGAAACTGCAATTTCTTCTACTGAAGCTGGATGGTGAAAAGGAAAGCAAAGGGTCAACCAGGATCAAGGAGAGGAAAACAAGAGTTCTTCTGCGGGACTATCTCTATTCTGGGACTAGAATGAGCAACACAACCCCAAAGCGTAAGAAAGCTCCTTTTTGTGCATGCATGCCCCCAACTAAGGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

1791

Amino Acids

203.59

Weight (kDa)

5.0

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	14 - 87	1.7e-37	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009764)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38020
malus_domestica	MD08G1008400.v1.1 MD15G1007300.v1.1
prunus_persica	Prupe.1G360200_v2.0.a1 Prupe.1G360200_v2.0.a1
pyrus_communis	pycom08g00670 pycom15g00590
rosa_chinensis	RchiOBHm_Chr6g0303591
rosa_laevigata	RLG00000011070
rosa_multiflora	Rmu_co8467275.1_g000001 Rmu_ssc0000114.1_g000024
rosa_roxburghii	Rroxscaffold_7G00164600
rosa_rugosa	Rorug06G0322500 Rorug06G0322600 Rorug06G0322700 Rorug06G0322800
rosa_samantha	Rh6AG437000 Rh6BG466300 Rh6CG449100 Rh6DG435800
rosa_wichuraiana	Rw6G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1903
Acc36I	ACCTGC	3 cut(s)	338, 1903, 3721
AccB1I	GGYRCC	1 cut(s)	3167
AccBSI	CCGCTC	1 cut(s)	1528
AccI	GTMKAC	2 cut(s)	1501, 3304
AccII	CGCG	1 cut(s)	3382
AciI	CCGC	8 cut(s)	20, 1316, 1528, 2778, 3028, 3086, 4638, 5278
AclWI	GGATC	9 cut(s)	365, 565, 1928, 1941, 3336, 3349, 4087, 4114, 5255
AcoI	YGGCCR	1 cut(s)	634
AcyI	GRCGYC	1 cut(s)	3168
AfaI	GTAC	8 cut(s)	761, 1265, 2182, 2416, 4261, 4698, 4972, 5184
AfiI	CCNNNNNNNGG	6 cut(s)	663, 1591, 3351, 3394, 5365, 5366
AhlI	ACTAGT	1 cut(s)	3791
AjnI	CCWGG	6 cut(s)	282, 824, 1275, 1590, 4644, 5243
AjuI	GAANNNNNNNTTGG	6 cut(s)	2252, 2284, 3504, 3536, 3896, 3928
Alw21I	GWGCWC	5 cut(s)	814, 1623, 3495, 4104, 4334
Alw26I	GTCTC	9 cut(s)	359, 683, 808, 1778, 2166, 3702, 4628, 5073, 5119
Alw44I	GTGCAC	1 cut(s)	810
AlwI	GGATC	9 cut(s)	365, 565, 1928, 1941, 3336, 3349, 4087, 4114, 5255
AlwNI	CAGNNNCTG	2 cut(s)	1567, 5191
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	583, 634, 4677
ApaLI	GTGCAC	1 cut(s)	810
ApeKI	GCWGC	8 cut(s)	1082, 1250, 1253, 1570, 4031, 4223, 4653, 4984
ArsI	GACNNNNNNTTYG	2 cut(s)	5135, 5167
AspLEI	GCGC	4 cut(s)	282, 2029, 3170, 3382
AspS9I	GGNCC	4 cut(s)	583, 1825, 3132, 4678
AsuC2I	CCSGG	1 cut(s)	3727
AsuHPI	GGTGA	9 cut(s)	509, 1456, 1478, 1705, 1775, 3559, 3680, 4033, 5231
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	1825, 3132
BaeGI	GKGCMC	3 cut(s)	277, 814, 982
BaeI	ACNNNNGTAYC	4 cut(s)	743, 776, 4680, 4713
BalI	TGGCCA	1 cut(s)	636
BamHI	GGATCC	2 cut(s)	1933, 3341
BanI	GGYRCC	1 cut(s)	3167
BanII	GRGCYC	5 cut(s)	1623, 3495, 4104, 4334, 4824
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BauI	CACGAG	3 cut(s)	807, 3266, 4097
BbsI	GAAGAC	6 cut(s)	911, 1385, 1725, 4134, 4914, 4946
Bbv12I	GWGCWC	5 cut(s)	814, 1623, 3495, 4104, 4334
BbvI	GCAGC	8 cut(s)	1069, 1237, 1240, 1582, 4043, 4210, 4665, 4996
BceAI	ACGGC	1 cut(s)	1349
BcgI	CGANNNNNNTGC	4 cut(s)	2042, 2076, 3799, 3833
BciT130I	CCWGG	6 cut(s)	284, 826, 1277, 1592, 4646, 5245
BclI	TGATCA	5 cut(s)	129, 259, 2376, 3655, 3978
BcnI	CCSGG	1 cut(s)	3727
BcoDI	GTCTC	9 cut(s)	359, 683, 808, 1778, 2166, 3702, 4628, 5073, 5119
BcuI	ACTAGT	1 cut(s)	3791
BfmI	CTRYAG	8 cut(s)	345, 1043, 1421, 1568, 2702, 3746, 4052, 4385
BfoI	RGCGCY	2 cut(s)	2030, 3171
BfuAI	ACCTGC	3 cut(s)	338, 1903, 3721
BglI	GCCNNNNNGGC	1 cut(s)	4685
BisI	GCNGC	8 cut(s)	1083, 1251, 1254, 1571, 4032, 4224, 4654, 4985
BlpI	GCTNAGC	1 cut(s)	1617
BlsI	GCNGC	8 cut(s)	1084, 1252, 1255, 1572, 4033, 4225, 4655, 4986
BmcAI	AGTACT	1 cut(s)	2416
Bme1390I	CCNGG	7 cut(s)	284, 826, 1277, 1592, 3727, 4646, 5245
Bme18I	GGWCC	2 cut(s)	1825, 3132
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	4 cut(s)	583, 1825, 3132, 4678
BmiI	GGNNCC	6 cut(s)	517, 1935, 3134, 3169, 3343, 4821
BmrFI	CCNGG	7 cut(s)	284, 826, 1277, 1592, 3727, 4646, 5245
BmrI	ACTGGG	5 cut(s)	279, 1579, 2209, 2578, 3130
BmuI	ACTGGG	5 cut(s)	279, 1579, 2209, 2578, 3130
BoxI	GACNNNNGTC	1 cut(s)	4710
BpiI	GAAGAC	6 cut(s)	911, 1385, 1725, 4134, 4914, 4946
BplI	GAGNNNNNCTC	2 cut(s)	2456, 2488
BpmI	CTGGAG	7 cut(s)	1014, 1130, 1148, 1244, 1607, 2501, 4172
Bpu1102I	GCTNAGC	1 cut(s)	1617
BpuEI	CTTGAG	6 cut(s)	1316, 1446, 1798, 2332, 3584, 4292
BpuMI	CCSGG	1 cut(s)	3727
BsaBI	GATNNNNATC	3 cut(s)	1772, 2690, 4347
BsaHI	GRCGYC	1 cut(s)	3168
BsaI	GGTCTC	1 cut(s)	4628
BsaJI	CCNNGG	5 cut(s)	297, 825, 1590, 2920, 4902
BsaXI	ACNNNNNCTCC	6 cut(s)	1421, 1451, 3551, 3581, 3959, 3989
Bsc4I	CCNNNNNNNGG	6 cut(s)	663, 1591, 3351, 3394, 5365, 5366
Bse3DI	GCAATG	3 cut(s)	1277, 2787, 3066
Bse8I	GATNNNNATC	3 cut(s)	1772, 2690, 4347
BseBI	CCWGG	6 cut(s)	284, 826, 1277, 1592, 4646, 5245
BseDI	CCNNGG	5 cut(s)	297, 825, 1590, 2920, 4902
BseJI	GATNNNNATC	3 cut(s)	1772, 2690, 4347
BseLI	CCNNNNNNNGG	6 cut(s)	663, 1591, 3351, 3394, 5365, 5366
BseMI	GCAATG	3 cut(s)	1277, 2787, 3066
BseRI	GAGGAG	7 cut(s)	442, 445, 1166, 1334, 1337, 3980, 4051
BseSI	GKGCMC	3 cut(s)	277, 814, 982
BseXI	GCAGC	8 cut(s)	1069, 1237, 1240, 1582, 4043, 4210, 4665, 4996
BsgI	GTGCAG	5 cut(s)	1068, 2484, 2664, 2949, 3248
Bsh1236I	CGCG	1 cut(s)	3382
Bsh1285I	CGRYCG	1 cut(s)	5167
BshFI	GGCC	3 cut(s)	585, 636, 4679
BshNI	GGYRCC	1 cut(s)	3167
BsiEI	CGRYCG	1 cut(s)	5167
BsiHKAI	GWGCWC	5 cut(s)	814, 1623, 3495, 4104, 4334
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	3726
BslFI	GGGAC	9 cut(s)	65, 459, 843, 1573, 4493, 5078, 5122, 5294, 5311
BslI	CCNNNNNNNGG	6 cut(s)	663, 1591, 3351, 3394, 5365, 5366
BsmAI	GTCTC	9 cut(s)	359, 683, 808, 1778, 2166, 3702, 4628, 5073, 5119
BsmBI	CGTCTC	1 cut(s)	1778
BsmFI	GGGAC	9 cut(s)	65, 459, 843, 1573, 4493, 5078, 5122, 5294, 5311
BsmI	GAATGC	3 cut(s)	1579, 2299, 3196
BsnI	GGCC	3 cut(s)	585, 636, 4679
Bso31I	GGTCTC	1 cut(s)	4628
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	8 cut(s)	277, 814, 982, 1623, 3495, 4104, 4334, 4824
Bsp1407I	TGTACA	1 cut(s)	4259
Bsp1720I	GCTNAGC	1 cut(s)	1617
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	8 cut(s)	20, 1316, 1528, 2778, 3028, 3086, 4638, 5278
BspANI	GGCC	3 cut(s)	585, 636, 4679
BspFNI	CGCG	1 cut(s)	3382
BspHI	TCATGA	1 cut(s)	2745
BspLI	GGNNCC	6 cut(s)	517, 1935, 3134, 3169, 3343, 4821
BspMAI	CTGCAG	6 cut(s)	349, 1425, 1572, 2706, 4056, 4389
BspMI	ACCTGC	3 cut(s)	338, 1903, 3721
BspPI	GGATC	9 cut(s)	365, 565, 1928, 1941, 3336, 3349, 4087, 4114, 5255
BspQI	GCTCTTC	5 cut(s)	1464, 1518, 1845, 2511, 3483
BspT107I	GGYRCC	1 cut(s)	3167
BspTNI	GGTCTC	1 cut(s)	4628
BsrBI	CCGCTC	1 cut(s)	1528
BsrDI	GCAATG	3 cut(s)	1277, 2787, 3066
BsrGI	TGTACA	1 cut(s)	4259
BssECI	CCNNGG	5 cut(s)	297, 825, 1590, 2920, 4902
BssNI	GRCGYC	1 cut(s)	3168
BssSI	CACGAG	3 cut(s)	807, 3266, 4097
BssT1I	CCWWGG	2 cut(s)	297, 2920
Bst2BI	CACGAG	3 cut(s)	807, 3266, 4097
Bst2UI	CCWGG	6 cut(s)	284, 826, 1277, 1592, 4646, 5245
BstACI	GRCGYC	1 cut(s)	3168
BstAPI	GCANNNNNTGC	3 cut(s)	239, 1576, 3065
BstAUI	TGTACA	1 cut(s)	4259
BstDSI	CCRYGG	2 cut(s)	297, 4902
BstENI	CCTNNNNNAGG	2 cut(s)	3349, 3392
BstFNI	CGCG	1 cut(s)	3382
BstH2I	RGCGCY	2 cut(s)	2030, 3171
BstHHI	GCGC	4 cut(s)	282, 2029, 3170, 3382
BstMAI	GTCTC	9 cut(s)	359, 683, 808, 1778, 2166, 3702, 4628, 5073, 5119
BstMCI	CGRYCG	1 cut(s)	5167
BstNI	CCWGG	6 cut(s)	284, 826, 1277, 1592, 4646, 5245
BstNSI	RCATGY	5 cut(s)	37, 625, 1148, 5352, 5356
BstPAI	GACNNNNGTC	1 cut(s)	4710
BstSCI	CCNGG	7 cut(s)	282, 824, 1275, 1590, 3725, 4644, 5243
BstSFI	CTRYAG	8 cut(s)	345, 1043, 1421, 1568, 2702, 3746, 4052, 4385
BstSLI	GKGCMC	3 cut(s)	277, 814, 982
BstUI	CGCG	1 cut(s)	3382
BstV1I	GCAGC	8 cut(s)	1069, 1237, 1240, 1582, 4043, 4210, 4665, 4996
BstV2I	GAAGAC	6 cut(s)	911, 1385, 1725, 4134, 4914, 4946
BstXI	CCANNNNNNTGG	1 cut(s)	4150
BsuRI	GGCC	3 cut(s)	585, 636, 4679
BtgI	CCRYGG	2 cut(s)	297, 4902
BtsI	GCAGTG	2 cut(s)	275, 1565
BtsIMutI	CAGTG	9 cut(s)	275, 1565, 1882, 1944, 2379, 2867, 3988, 4368, 5110
BveI	ACCTGC	3 cut(s)	338, 1903, 3721
CaiI	CAGNNNCTG	2 cut(s)	1567, 5191
CciI	TCATGA	1 cut(s)	2745
CfoI	GCGC	4 cut(s)	282, 2029, 3170, 3382
Cfr13I	GGNCC	4 cut(s)	583, 1825, 3132, 4678
CseI	GACGC	3 cut(s)	39, 614, 3394
Csp6I	GTAC	8 cut(s)	760, 1264, 2181, 2415, 4260, 4697, 4971, 5183
CspCI	CAANNNNNGTGG	2 cut(s)	4024, 4059
CviQI	GTAC	8 cut(s)	760, 1264, 2181, 2415, 4260, 4697, 4971, 5183
DinI	GGCGCC	1 cut(s)	3169
EaeI	YGGCCR	1 cut(s)	634
EciI	GGCGGA	1 cut(s)	3101
Ecl136II	GAGCTC	4 cut(s)	1621, 3493, 4102, 4332
Eco130I	CCWWGG	2 cut(s)	297, 2920
Eco24I	GRGCYC	5 cut(s)	1623, 3495, 4104, 4334, 4824
Eco31I	GGTCTC	1 cut(s)	4628
Eco32I	GATATC	1 cut(s)	4560
Eco47I	GGWCC	2 cut(s)	1825, 3132
Eco53kI	GAGCTC	4 cut(s)	1621, 3493, 4102, 4332
Eco88I	CYCGRG	1 cut(s)	76
EcoICRI	GAGCTC	4 cut(s)	1621, 3493, 4102, 4332
EcoNI	CCTNNNNNAGG	2 cut(s)	3349, 3392
EcoO109I	RGGNCCY	2 cut(s)	583, 3132
EcoRI	GAATTC	2 cut(s)	2086, 2275
EcoRII	CCWGG	6 cut(s)	282, 824, 1275, 1590, 4644, 5243
EcoRV	GATATC	1 cut(s)	4560
EcoT14I	CCWWGG	2 cut(s)	297, 2920
EcoT22I	ATGCAT	1 cut(s)	5354
EcoT38I	GRGCYC	5 cut(s)	1623, 3495, 4104, 4334, 4824
EgeI	GGCGCC	1 cut(s)	3169
EheI	GGCGCC	1 cut(s)	3169
ErhI	CCWWGG	2 cut(s)	297, 2920
Esp3I	CGTCTC	1 cut(s)	1778
FaqI	GGGAC	9 cut(s)	65, 459, 843, 1573, 4493, 5078, 5122, 5294, 5311
FauI	CCCGC	1 cut(s)	5271
FbaI	TGATCA	5 cut(s)	129, 259, 2376, 3655, 3978
FblI	GTMKAC	2 cut(s)	1501, 3304
Fnu4HI	GCNGC	8 cut(s)	1083, 1251, 1254, 1571, 4032, 4224, 4654, 4985
FriOI	GRGCYC	5 cut(s)	1623, 3495, 4104, 4334, 4824
Fsp4HI	GCNGC	8 cut(s)	1083, 1251, 1254, 1571, 4032, 4224, 4654, 4985
GlaI	GCGC	4 cut(s)	281, 2028, 3169, 3381
GluI	GCNGC	8 cut(s)	1083, 1251, 1254, 1571, 4032, 4224, 4654, 4985
GsuI	CTGGAG	7 cut(s)	1014, 1130, 1148, 1244, 1607, 2501, 4172
HaeII	RGCGCY	2 cut(s)	2030, 3171
HaeIII	GGCC	3 cut(s)	585, 636, 4679
HapII	CCGG	1 cut(s)	3726
HgaI	GACGC	3 cut(s)	39, 614, 3394
HhaI	GCGC	4 cut(s)	282, 2029, 3170, 3382
Hin1I	GRCGYC	1 cut(s)	3168
Hin6I	GCGC	4 cut(s)	280, 2027, 3168, 3380
HinP1I	GCGC	4 cut(s)	280, 2027, 3168, 3380
HincII	GTYRAC	4 cut(s)	2905, 4789, 4884, 5241
HindII	GTYRAC	4 cut(s)	2905, 4789, 4884, 5241
HpaII	CCGG	1 cut(s)	3726
HphI	GGTGA	9 cut(s)	509, 1456, 1478, 1705, 1775, 3559, 3680, 4033, 5231
Hpy99I	CGWCG	1 cut(s)	1358
HpyCH4IV	ACGT	1 cut(s)	4872
HpySE526I	ACGT	1 cut(s)	4872
Hsp92I	GRCGYC	1 cut(s)	3168
HspAI	GCGC	4 cut(s)	280, 2027, 3168, 3380
KasI	GGCGCC	1 cut(s)	3167
Ksp22I	TGATCA	5 cut(s)	129, 259, 2376, 3655, 3978
LguI	GCTCTTC	5 cut(s)	1464, 1518, 1845, 2511, 3483
LmnI	GCTCC	6 cut(s)	400, 488, 1626, 4819, 5078, 5341
Lsp1109I	GCAGC	8 cut(s)	1069, 1237, 1240, 1582, 4043, 4210, 4665, 4996
MaeII	ACGT	1 cut(s)	4872
MaeIII	GTNAC	7 cut(s)	1877, 2674, 3182, 3383, 3434, 3497, 4021
MbiI	CCGCTC	1 cut(s)	1528
MfeI	CAATTG	2 cut(s)	1221, 3659
MhlI	GDGCHC	8 cut(s)	277, 814, 982, 1623, 3495, 4104, 4334, 4824
MlsI	TGGCCA	1 cut(s)	636
MluNI	TGGCCA	1 cut(s)	636
Mly113I	GGCGCC	1 cut(s)	3168
MmeI	TCCRAC	9 cut(s)	1407, 1413, 2013, 2022, 2124, 3258, 3600, 3894, 5157
Mox20I	TGGCCA	1 cut(s)	636
Mph1103I	ATGCAT	1 cut(s)	5354
MscI	TGGCCA	1 cut(s)	636
MslI	CAYNNNNRTG	4 cut(s)	468, 3059, 3504, 4197
Msp20I	TGGCCA	1 cut(s)	636
MspA1I	CMGCKG	5 cut(s)	541, 3028, 4238, 4640, 4987
MspI	CCGG	1 cut(s)	3726
MspR9I	CCNGG	7 cut(s)	284, 826, 1277, 1592, 3727, 4646, 5245
MunI	CAATTG	2 cut(s)	1221, 3659
Mva1269I	GAATGC	3 cut(s)	1579, 2299, 3196
MvaI	CCWGG	6 cut(s)	284, 826, 1277, 1592, 4646, 5245
MvnI	CGCG	1 cut(s)	3382
NarI	GGCGCC	1 cut(s)	3168
NciI	CCSGG	1 cut(s)	3727
NcoI	CCATGG	1 cut(s)	297
NlaIV	GGNNCC	6 cut(s)	517, 1935, 3134, 3169, 3343, 4821
NmeAIII	GCCGAG	1 cut(s)	2398
NmuCI	GTSAC	4 cut(s)	1877, 3182, 3497, 4021
NsiI	ATGCAT	1 cut(s)	5354
NspI	RCATGY	5 cut(s)	37, 625, 1148, 5352, 5356
PaeI	GCATGC	3 cut(s)	625, 5352, 5356
PaeR7I	CTCGAG	1 cut(s)	76
PagI	TCATGA	1 cut(s)	2745
PaqCI	CACCTGC	1 cut(s)	1903
PciSI	GCTCTTC	5 cut(s)	1464, 1518, 1845, 2511, 3483
PctI	GAATGC	3 cut(s)	1579, 2299, 3196
PflFI	GACNNNGTC	2 cut(s)	10, 3136
PkrI	GCNGC	8 cut(s)	1084, 1252, 1255, 1572, 4033, 4225, 4655, 4986
PluTI	GGCGCC	1 cut(s)	3171
PpuMI	RGGWCCY	1 cut(s)	3132
PshAI	GACNNNNGTC	1 cut(s)	4710
Psp124BI	GAGCTC	4 cut(s)	1623, 3495, 4104, 4334
Psp5II	RGGWCCY	1 cut(s)	3132
Psp6I	CCWGG	6 cut(s)	282, 824, 1275, 1590, 4644, 5243
PspGI	CCWGG	6 cut(s)	282, 824, 1275, 1590, 4644, 5243
PspN4I	GGNNCC	6 cut(s)	517, 1935, 3134, 3169, 3343, 4821
PspPI	GGNCC	4 cut(s)	583, 1825, 3132, 4678
PspPPI	RGGWCCY	1 cut(s)	3132
PstI	CTGCAG	6 cut(s)	349, 1425, 1572, 2706, 4056, 4389
PstNI	CAGNNNCTG	2 cut(s)	1567, 5191
PsyI	GACNNNGTC	2 cut(s)	10, 3136
PvuII	CAGCTG	3 cut(s)	541, 4238, 4987
RsaI	GTAC	8 cut(s)	761, 1265, 2182, 2416, 4261, 4698, 4972, 5184
RsaNI	GTAC	8 cut(s)	760, 1264, 2181, 2415, 4260, 4697, 4971, 5183
RseI	CAYNNNNRTG	4 cut(s)	468, 3059, 3504, 4197
SacI	GAGCTC	4 cut(s)	1623, 3495, 4104, 4334
SapI	GCTCTTC	5 cut(s)	1464, 1518, 1845, 2511, 3483
SatI	GCNGC	8 cut(s)	1083, 1251, 1254, 1571, 4032, 4224, 4654, 4985
Sau96I	GGNCC	4 cut(s)	583, 1825, 3132, 4678
SbfI	CCTGCAGG	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	2416
ScrFI	CCNGG	7 cut(s)	284, 826, 1277, 1592, 3727, 4646, 5245
SdaI	CCTGCAGG	1 cut(s)	349
SduI	GDGCHC	8 cut(s)	277, 814, 982, 1623, 3495, 4104, 4334, 4824
SfcI	CTRYAG	8 cut(s)	345, 1043, 1421, 1568, 2702, 3746, 4052, 4385
SfoI	GGCGCC	1 cut(s)	3169
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	2 cut(s)	1825, 3132
SlaI	CTCGAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	4 cut(s)	468, 3059, 3504, 4197
SmlI	CTYRAG	7 cut(s)	76, 1295, 1461, 1777, 2311, 3599, 4271
SmoI	CTYRAG	7 cut(s)	76, 1295, 1461, 1777, 2311, 3599, 4271
SpeI	ACTAGT	1 cut(s)	3791
SphI	GCATGC	3 cut(s)	625, 5352, 5356
Sse8387I	CCTGCAGG	1 cut(s)	349
SsiI	CCGC	8 cut(s)	20, 1316, 1528, 2778, 3028, 3086, 4638, 5278
SspDI	GGCGCC	1 cut(s)	3167
SstI	GAGCTC	4 cut(s)	1623, 3495, 4104, 4334
StyD4I	CCNGG	7 cut(s)	282, 824, 1275, 1590, 3725, 4644, 5243
StyI	CCWWGG	2 cut(s)	297, 2920
TaiI	ACGT	1 cut(s)	4875
TaqII	GACCGA	1 cut(s)	5153
TatI	WGTACW	3 cut(s)	1263, 2414, 4259
TscAI	CASTG	9 cut(s)	282, 1572, 1882, 1944, 2386, 2874, 3988, 4368, 5110
TseFI	GTSAC	4 cut(s)	1877, 3182, 3497, 4021
TseI	GCWGC	8 cut(s)	1082, 1250, 1253, 1570, 4031, 4223, 4653, 4984
Tsp45I	GTSAC	4 cut(s)	1877, 3182, 3497, 4021
TspGWI	ACGGA	3 cut(s)	315, 3884, 4355
TspRI	CASTG	9 cut(s)	282, 1572, 1882, 1944, 2386, 2874, 3988, 4368, 5110
Tth111I	GACNNNGTC	2 cut(s)	10, 3136
VneI	GTGCAC	1 cut(s)	810
VpaK11BI	GGWCC	2 cut(s)	1825, 3132
XagI	CCTNNNNNAGG	2 cut(s)	3349, 3392
XbaI	TCTAGA	2 cut(s)	26, 4852
XceI	RCATGY	5 cut(s)	37, 625, 1148, 5352, 5356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	989
XhoI	CTCGAG	1 cut(s)	76
XmiI	GTMKAC	2 cut(s)	1501, 3304
ZrmI	AGTACT	1 cut(s)	2416
Zsp2I	ATGCAT	1 cut(s)	5354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.