Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467275.1

Orthogroup ID

OG0009764

Physical Location & Seq

Genomic Coordinates Reverse (-)

445 .. 1867

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgttggaaaccagttgggtgaaagttgctgatcttgatgggaagataatagggctctacttctcggccaattggtacccgccctgctggaacttcaaccaagtcctagttggtatctataatcagcttaagaacagtagcagtacggggtctagctttgagattgtgtacatatcatctgatgaagactctgacgcctttaacacctaccatgcttgcatgccgtggctggcgattccgttttcggatttagagaccaagaaagctctgaaccgcaagtttgagatagagggaattccgagcttggttattctgcaacctagtgatggtgatggggctacgttgcatgatggagtagagctcatttatcgctatggtgtccaagccttcccttttactagacagaggctggaacagttggaggaggaggagaaacagaagcatgagaaccagaccttgaccaatctactaacgaaccacgacagacactatcttctgggccatcagacgcctaatcaggtgcctgtggcctcattggtaggcaagacaattggactctacttctcagctcagtggtgcattccatgcgttaatttcactcctaggctaatctcaatctacaagaagattaaagagcaaatgctagtaggtgatcaacaacaagatggagaggacttcgagatagtgtttgtttcaagtgaccgtgaccgaacatcctttgaagcctacttcagcaccatgccatggctggcattgccttttgaggatcccaacatcaaagagcttgtgaagcatttcgatgtcaaaggtattccttgtttggtaattttggggccggatggtaaaactgtcaccaggcagggtagaaatttgataaacttgtacaaagaaaatgcgtatcccttcaccgatgcgaagttggaattgctggagaagaaaatggatgaagaggcgaagagcctgccgaggtcggtgtaccatggagggcataggcatgagctgaatttggtgtccgaaggcaatggaggaggaccctttatatgttgtgactgtgatgaacaaggatgcggttgggcttatcagtgtcttgaatgtggatatgaggtgcaccccaagtgtgtcgcagctgctactggtgcagtcaatacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

383

Amino Acids

43.26

Weight (kDa)

5.09

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009764)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38020
malus_domestica	MD08G1008400.v1.1 MD15G1007300.v1.1
prunus_persica	Prupe.1G360200_v2.0.a1 Prupe.1G360200_v2.0.a1
pyrus_communis	pycom08g00670 pycom15g00590
rosa_chinensis	RchiOBHm_Chr6g0303591
rosa_laevigata	RLG00000011070
rosa_multiflora	Rmu_co8467275.1_g000001 Rmu_ssc0000114.1_g000024
rosa_roxburghii	Rroxscaffold_7G00164600
rosa_rugosa	Rorug06G0322500 Rorug06G0322600 Rorug06G0322700 Rorug06G0322800
rosa_samantha	Rh6AG437000 Rh6BG466300 Rh6CG449100 Rh6DG435800
rosa_wichuraiana	Rw6G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	2 cut(s)	75, 520
AccB7I	CCANNNNNTGG	1 cut(s)	744
AciI	CCGC	3 cut(s)	80, 274, 1068
AclWI	GGATC	2 cut(s)	761, 774
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	294, 868, 1003
AcuI	CTGAAG	1 cut(s)	715
AcyI	GRCGYC	2 cut(s)	195, 509
AfaI	GTAC	5 cut(s)	77, 145, 170, 884, 977
AfiI	CCNNNNNNNGG	2 cut(s)	326, 744
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	97, 696, 722, 1091
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	9 cut(s)	127, 156, 266, 303, 361, 569, 784, 1000, 1127
AluI	AGCT	9 cut(s)	127, 156, 266, 303, 361, 569, 784, 1000, 1127
Alw21I	GWGCWC	2 cut(s)	363, 1110
Alw26I	GTCTC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	1106
AlwI	GGATC	2 cut(s)	761, 774
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	4 cut(s)	66, 499, 528, 833
ApaLI	GTGCAC	1 cut(s)	1106
ApeKI	GCWGC	2 cut(s)	1124, 1127
ApoI	RAATTY	3 cut(s)	294, 868, 1003
Asp700I	GAANNNNTTC	1 cut(s)	794
Asp718I	GGTACC	1 cut(s)	75
AspA2I	CCTAGG	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	499, 833, 1031
AsuHPI	GGTGA	5 cut(s)	31, 341, 662, 844, 898
AvaII	GGWCC	1 cut(s)	1031
AvrII	CCTAGG	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	1110
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	2 cut(s)	75, 520
BanII	GRGCYC	2 cut(s)	57, 363
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	363, 1110
BbvI	GCAGC	2 cut(s)	1114, 1136
BccI	CCATC	7 cut(s)	32, 320, 326, 344, 510, 659, 833
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	943, 977
BciT130I	CCWGG	1 cut(s)	856
BciVI	GTATCC	1 cut(s)	909
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	6 cut(s)	107, 153, 321, 399, 603, 644
BfrI	CTTAAG	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	909
BisI	GCNGC	2 cut(s)	1125, 1128
BlnI	CCTAGG	1 cut(s)	602
BlsI	GCNGC	2 cut(s)	1126, 1129
Bme1390I	CCNGG	1 cut(s)	856
Bme18I	GGWCC	1 cut(s)	1031
BmgT120I	GGNCC	3 cut(s)	499, 833, 1031
BmiI	GGNNCC	5 cut(s)	77, 522, 768, 834, 1033
BmrFI	CCNGG	1 cut(s)	856
BmsI	GCATC	2 cut(s)	901, 1055
BpiI	GAAGAC	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpmI	CTGGAG	1 cut(s)	950
BsaAI	YACGTR	1 cut(s)	1149
BsaHI	GRCGYC	2 cut(s)	195, 509
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	5 cut(s)	224, 602, 743, 965, 979
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 744
Bse1I	ACTGG	2 cut(s)	12, 1138
Bse3DI	GCAATG	2 cut(s)	752, 1027
BseBI	CCWGG	1 cut(s)	856
BseDI	CCNNGG	5 cut(s)	224, 602, 743, 965, 979
BseGI	GGATG	4 cut(s)	713, 844, 949, 1070
BseLI	CCNNNNNNNGG	2 cut(s)	326, 744
BseMI	GCAATG	2 cut(s)	752, 1027
BseMII	CTCAG	2 cut(s)	579, 584
BseNI	ACTGG	2 cut(s)	12, 1138
BseRI	GAGGAG	4 cut(s)	437, 440, 443, 1041
BseSI	GKGCMC	1 cut(s)	1110
BseXI	GCAGC	2 cut(s)	1114, 1136
BshFI	GGCC	4 cut(s)	68, 501, 530, 835
BshNI	GGYRCC	2 cut(s)	75, 520
BsiHKAI	GWGCWC	2 cut(s)	363, 1110
BsiSI	CCGG	1 cut(s)	836
BslI	CCNNNNNNNGG	2 cut(s)	326, 744
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	4 cut(s)	68, 501, 530, 835
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	3 cut(s)	57, 363, 1110
Bsp1407I	TGTACA	2 cut(s)	168, 882
Bsp143I	GATC	3 cut(s)	31, 652, 766
Bsp19I	CCATGG	2 cut(s)	743, 979
BspACI	CCGC	3 cut(s)	80, 274, 1068
BspANI	GGCC	4 cut(s)	68, 501, 530, 835
BspCNI	CTCAG	2 cut(s)	578, 583
BspLI	GGNNCC	5 cut(s)	77, 522, 768, 834, 1033
BspPI	GGATC	2 cut(s)	761, 774
BspQI	GCTCTTC	1 cut(s)	950
BspT107I	GGYRCC	2 cut(s)	75, 520
BspTI	CTTAAG	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	2 cut(s)	752, 1027
BsrGI	TGTACA	2 cut(s)	168, 882
BsrI	ACTGG	2 cut(s)	12, 1138
BssECI	CCNNGG	5 cut(s)	224, 602, 743, 965, 979
BssMI	GATC	3 cut(s)	31, 652, 766
BssNI	GRCGYC	2 cut(s)	195, 509
BssT1I	CCWWGG	3 cut(s)	602, 743, 979
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	5 cut(s)	137, 417, 704, 850, 1052
Bst6I	CTCTTC	2 cut(s)	942, 950
BstACI	GRCGYC	2 cut(s)	195, 509
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	585
BstAUI	TGTACA	2 cut(s)	168, 882
BstBAI	YACGTR	1 cut(s)	1149
BstC8I	GCNNGC	5 cut(s)	217, 221, 231, 750, 962
BstDEI	CTNAG	2 cut(s)	565, 570
BstDSI	CCRYGG	3 cut(s)	224, 743, 979
BstF5I	GGATG	4 cut(s)	713, 844, 949, 1070
BstKTI	GATC	3 cut(s)	34, 655, 769
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	31, 652, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	585, 754, 790, 1136
BstNI	CCWGG	1 cut(s)	856
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	854
BstSLI	GKGCMC	1 cut(s)	1110
BstV1I	GCAGC	2 cut(s)	1114, 1136
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	4 cut(s)	68, 501, 530, 835
BtgI	CCRYGG	3 cut(s)	224, 743, 979
BtsCI	GGATG	4 cut(s)	713, 844, 949, 1070
BtsIMutI	CAGTG	2 cut(s)	578, 1088
Cac8I	GCNNGC	5 cut(s)	217, 221, 231, 750, 962
CaiI	CAGNNNCTG	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	499, 833, 1031
CseI	GACGC	2 cut(s)	203, 517
Csp6I	GTAC	5 cut(s)	76, 144, 169, 883, 976
CviAII	CATG	9 cut(s)	212, 220, 347, 443, 585, 739, 744, 980, 995
CviQI	GTAC	5 cut(s)	76, 144, 169, 883, 976
DdeI	CTNAG	2 cut(s)	565, 570
DpnI	GATC	3 cut(s)	33, 654, 768
DpnII	GATC	3 cut(s)	31, 652, 766
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	942, 950
EarI	CTCTTC	2 cut(s)	942, 950
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	3 cut(s)	602, 743, 979
Eco24I	GRGCYC	2 cut(s)	57, 363
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	715
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	854
EcoT14I	CCWWGG	3 cut(s)	602, 743, 979
EcoT38I	GRGCYC	2 cut(s)	57, 363
ErhI	CCWWGG	3 cut(s)	602, 743, 979
FaeI	CATG	9 cut(s)	215, 223, 350, 446, 588, 742, 747, 983, 998
FatI	CATG	9 cut(s)	211, 219, 346, 442, 584, 738, 743, 979, 994
FauI	CCCGC	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	1125, 1128
FokI	GGATG	4 cut(s)	700, 851, 956, 1077
FriOI	GRGCYC	2 cut(s)	57, 363
Fsp4HI	GCNGC	2 cut(s)	1125, 1128
FspBI	CTAG	6 cut(s)	107, 153, 321, 399, 603, 644
GluI	GCNGC	2 cut(s)	1125, 1128
GsuI	CTGGAG	1 cut(s)	950
HaeIII	GGCC	4 cut(s)	68, 501, 530, 835
HapII	CCGG	1 cut(s)	836
HgaI	GACGC	2 cut(s)	203, 517
Hin1I	GRCGYC	2 cut(s)	195, 509
Hin1II	CATG	9 cut(s)	215, 223, 350, 446, 588, 742, 747, 983, 998
HinfI	GANTC	3 cut(s)	188, 235, 555
HpaII	CCGG	1 cut(s)	836
HphI	GGTGA	5 cut(s)	31, 341, 662, 844, 898
Hpy166II	GTNNAC	3 cut(s)	169, 976, 1108
Hpy188I	TCNGA	7 cut(s)	181, 193, 247, 270, 300, 507, 1015
Hpy188III	TCNNGA	3 cut(s)	35, 679, 1088
Hpy8I	GTNNAC	3 cut(s)	169, 976, 1108
HpyAV	CCTTC	3 cut(s)	397, 913, 1010
HpyCH4III	ACNGT	5 cut(s)	137, 417, 704, 850, 1052
HpyCH4IV	ACGT	2 cut(s)	341, 1148
HpyCH4V	TGCA	6 cut(s)	219, 316, 346, 579, 1108, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	585, 754, 790, 1136
HpyF3I	CTNAG	2 cut(s)	565, 570
HpySE526I	ACGT	2 cut(s)	341, 1148
Hsp92I	GRCGYC	2 cut(s)	195, 509
Hsp92II	CATG	9 cut(s)	215, 223, 350, 446, 588, 742, 747, 983, 998
KpnI	GGTACC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	3 cut(s)	31, 652, 766
LguI	GCTCTTC	1 cut(s)	950
Lsp1109I	GCAGC	2 cut(s)	1114, 1136
LweI	GCATC	2 cut(s)	901, 1055
MaeI	CTAG	6 cut(s)	107, 153, 321, 399, 603, 644
MaeII	ACGT	2 cut(s)	341, 1148
MaeIII	GTNAC	4 cut(s)	698, 704, 850, 1046
MalI	GATC	3 cut(s)	33, 654, 768
MboI	GATC	3 cut(s)	31, 652, 766
MboII	GAAGA	7 cut(s)	55, 197, 485, 637, 946, 959, 967
MfeI	CAATTG	2 cut(s)	70, 549
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	3 cut(s)	57, 363, 1110
MluCI	AATT	8 cut(s)	70, 294, 549, 592, 825, 868, 923, 1003
MlyI	GAGTC	2 cut(s)	182, 549
MmeI	TCCRAC	2 cut(s)	399, 900
MroXI	GAANNNNTTC	1 cut(s)	794
MseI	TTAA	4 cut(s)	129, 201, 591, 630
MslI	CAYNNNNRTG	2 cut(s)	798, 993
MspA1I	CMGCKG	1 cut(s)	1127
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	836
MspR9I	CCNGG	1 cut(s)	856
MunI	CAATTG	2 cut(s)	70, 549
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	856
MwoI	GCNNNNNNNGC	4 cut(s)	585, 754, 790, 1136
NcoI	CCATGG	2 cut(s)	743, 979
NdeII	GATC	3 cut(s)	31, 652, 766
NlaIII	CATG	9 cut(s)	215, 223, 350, 446, 588, 742, 747, 983, 998
NlaIV	GGNNCC	5 cut(s)	77, 522, 768, 834, 1033
NmeAIII	GCCGAG	2 cut(s)	44, 990
NmuCI	GTSAC	4 cut(s)	698, 704, 850, 1046
NspI	RCATGY	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	950
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	744
PkrI	GCNGC	2 cut(s)	1126, 1129
PleI	GAGTC	2 cut(s)	182, 549
PpsI	GAGTC	2 cut(s)	182, 549
Ppu21I	YACGTR	1 cut(s)	1149
PpuMI	RGGWCCY	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	1031
Psp6I	CCWGG	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	854
PspN4I	GGNNCC	5 cut(s)	77, 522, 768, 834, 1033
PspPI	GGNCC	3 cut(s)	499, 833, 1031
PspPPI	RGGWCCY	1 cut(s)	1031
PstNI	CAGNNNCTG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	1127
RsaI	GTAC	5 cut(s)	77, 145, 170, 884, 977
RsaNI	GTAC	5 cut(s)	76, 144, 169, 883, 976
RseI	CAYNNNNRTG	2 cut(s)	798, 993
SacI	GAGCTC	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	950
SaqAI	TTAA	4 cut(s)	129, 201, 591, 630
SatI	GCNGC	2 cut(s)	1125, 1128
Sau3AI	GATC	3 cut(s)	31, 652, 766
Sau96I	GGNCC	3 cut(s)	499, 833, 1031
SchI	GAGTC	2 cut(s)	182, 549
ScrFI	CCNGG	1 cut(s)	856
SduI	GDGCHC	3 cut(s)	57, 363, 1110
SfaNI	GCATC	2 cut(s)	901, 1055
SinI	GGWCC	1 cut(s)	1031
SmiMI	CAYNNNNRTG	2 cut(s)	798, 993
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	8 cut(s)	70, 294, 549, 592, 825, 868, 923, 1003
SsiI	CCGC	3 cut(s)	80, 274, 1068
SspMI	CTAG	6 cut(s)	107, 153, 321, 399, 603, 644
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	854
StyI	CCWWGG	3 cut(s)	602, 743, 979
TaaI	ACNGT	5 cut(s)	137, 417, 704, 850, 1052
TaiI	ACGT	2 cut(s)	344, 1151
TaqI	TCGA	2 cut(s)	678, 798
TaqII	GACCGA	1 cut(s)	723
TasI	AATT	8 cut(s)	70, 294, 549, 592, 825, 868, 923, 1003
TatI	WGTACW	2 cut(s)	168, 882
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	129, 201, 591, 630
Tru9I	TTAA	4 cut(s)	129, 201, 591, 630
TscAI	CASTG	2 cut(s)	578, 1088
TseFI	GTSAC	4 cut(s)	698, 704, 850, 1046
TseI	GCWGC	2 cut(s)	1124, 1127
Tsp45I	GTSAC	4 cut(s)	698, 704, 850, 1046
TspDTI	ATGAA	3 cut(s)	198, 960, 1071
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	578, 1088
Van91I	CCANNNNNTGG	1 cut(s)	744
Vha464I	CTTAAG	1 cut(s)	128
VneI	GTGCAC	1 cut(s)	1106
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	294, 868, 1003
XceI	RCATGY	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 745
XmaJI	CCTAGG	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	6 cut(s)	107, 153, 321, 399, 603, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.