Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Reverse (-)

27295260 .. 27300368

Gene Structure 5109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013187

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGAGCTTCGTCTCCGAAAGATGGAAGCCATCACCGATTCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTATTGCCAAACCCAAAGATGACGAGGCTGCTTGAGACGGAGACTAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGCGATTGTGTTGCATACTTGGATTGTACTTGGAATCTTATTCAATTAGTTGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACTGTTCCTGTCGTGAATTATATTTTCAGAGACTCCCTTAAACAAAGAGTCAGCGATGCTGAAACTGTGAGGTTTCTTTTACGAGAAATTAAAGATTTTTGGCGAGTTGCTTTGCTGATGTCTACACTTTTATATCTACCGACGAAGAAGAGAGACATGAAAAGAGGAAAAAGAAGGAAAACAGAAGTGAAGGAGAGTAAAGCTATAGAATGGTGTGAGTTTCGATTTGGGTTTCTTGAGTTCGGTAATTCAGTGATTAAGGGAATAGAAAAAAGAAAAGAAAAGAAAGATGGGTCGGCTCCCCGGTCTAACAACCAAGCCAAAGCTAAAGCAATAGTACTAAGGATGAAGGCACTGCAAATGAAAAGAGGTAAAAAAACAGTGTCGAAACCAGCTATTGAAGAGACTGATGCACCACCTAAATCTGCCTTCACCAAACATGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

254

Amino Acids

29.32

Weight (kDa)

10.08

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	434
AccII	CGCG	1 cut(s)	101
AciI	CCGC	2 cut(s)	99, 101
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	2 cut(s)	217, 651
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AgsI	TTSAA	4 cut(s)	59, 233, 256, 713
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	9, 515, 638, 707
AluI	AGCT	4 cut(s)	9, 515, 638, 707
Alw26I	GTCTC	6 cut(s)	19, 140, 146, 336, 459, 710
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	139, 287
AsuC2I	CCSGG	1 cut(s)	616
AsuHPI	GGTGA	3 cut(s)	16, 27, 736
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	126, 274
BccI	CCATC	3 cut(s)	18, 40, 596
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	616
BcoDI	GTCTC	6 cut(s)	19, 140, 146, 336, 459, 710
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	3 cut(s)	102, 140, 288
BlsI	GCNGC	3 cut(s)	103, 141, 289
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	2 cut(s)	110, 616
BmgBI	CACGTC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	2 cut(s)	110, 616
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	358, 712
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	164, 569
BpuMI	CCSGG	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	99, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	99, 614
BseGI	GGATG	1 cut(s)	663
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	126, 274
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	6 cut(s)	19, 140, 146, 336, 459, 710
BsmBI	CGTCTC	2 cut(s)	19, 140
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	754
BspACI	CCGC	2 cut(s)	99, 101
BspANI	GGCC	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	99, 614
BssMI	GATC	1 cut(s)	754
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	316, 379, 694
Bst6I	CTCTTC	2 cut(s)	455, 708
BstDEI	CTNAG	3 cut(s)	44, 305, 653
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	663
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	1 cut(s)	757
BstMAI	GTCTC	6 cut(s)	19, 140, 146, 336, 459, 710
BstMBI	GATC	1 cut(s)	754
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	108, 614
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	126, 274
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	663
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	3 cut(s)	570, 665, 699
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr42I	CCGCGG	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	216, 650
CviAII	CATG	3 cut(s)	175, 469, 752
CviQI	GTAC	2 cut(s)	216, 650
DdeI	CTNAG	3 cut(s)	44, 305, 653
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	455, 708
EarI	CTCTTC	2 cut(s)	455, 708
EcoRII	CCWGG	1 cut(s)	108
Esp3I	CGTCTC	2 cut(s)	19, 140
FaeI	CATG	3 cut(s)	178, 472, 755
FaiI	YATR	9 cut(s)	91, 176, 205, 285, 333, 445, 470, 518, 753
FatI	CATG	3 cut(s)	174, 468, 751
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	3 cut(s)	102, 140, 288
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	3 cut(s)	102, 140, 288
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	102, 140, 288
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	616
Hin1II	CATG	3 cut(s)	178, 472, 755
HinfI	GANTC	4 cut(s)	40, 223, 344, 360
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	3 cut(s)	16, 27, 736
Hpy166II	GTNNAC	2 cut(s)	180, 435
Hpy188I	TCNGA	2 cut(s)	19, 341
Hpy188III	TCNNGA	2 cut(s)	325, 548
Hpy8I	GTNNAC	2 cut(s)	180, 435
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	7 cut(s)	262, 264, 308, 480, 496, 655, 751
HpyCH4III	ACNGT	3 cut(s)	316, 379, 694
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	5 cut(s)	93, 203, 290, 670, 725
HpyF3I	CTNAG	3 cut(s)	44, 305, 653
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	178, 472, 755
Ksp22I	TGATCA	1 cut(s)	754
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	1 cut(s)	754
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	7 cut(s)	95, 122, 153, 174, 333, 629, 717
Lsp1109I	GCAGC	2 cut(s)	126, 274
LweI	GCATC	2 cut(s)	358, 712
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	182
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MboII	GAAGA	6 cut(s)	44, 47, 322, 469, 472, 725
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	5 cut(s)	86, 233, 328, 399, 559
MlyI	GAGTC	2 cut(s)	338, 369
MnlI	CCTC	5 cut(s)	73, 129, 375, 470, 674
MseI	TTAA	3 cut(s)	351, 402, 570
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	110, 616
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	101
NciI	CCSGG	1 cut(s)	616
NdeII	GATC	1 cut(s)	754
NlaIII	CATG	3 cut(s)	178, 472, 755
NlaIV	GGNNCC	1 cut(s)	612
NmeAIII	GCCGAG	1 cut(s)	213
NspI	RCATGY	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	40, 223
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	103, 141, 289
PleI	GAGTC	2 cut(s)	338, 368
PpsI	GAGTC	2 cut(s)	338, 368
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	217, 651
RsaNI	GTAC	2 cut(s)	216, 650
SacII	CCGCGG	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	351, 402, 570
SatI	GCNGC	3 cut(s)	102, 140, 288
Sau3AI	GATC	1 cut(s)	754
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	2 cut(s)	338, 369
ScrFI	CCNGG	2 cut(s)	110, 616
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	358, 712
SfcI	CTRYAG	1 cut(s)	516
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	143, 548
SmoI	CTYRAG	2 cut(s)	143, 548
Sse9I	AATT	5 cut(s)	86, 233, 328, 399, 559
SsiI	CCGC	2 cut(s)	99, 101
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	108, 614
TaaI	ACNGT	3 cut(s)	316, 379, 694
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	535, 698
TasI	AATT	5 cut(s)	86, 233, 328, 399, 559
TatI	WGTACW	2 cut(s)	215, 649
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	40, 223
Tru1I	TTAA	3 cut(s)	351, 402, 570
Tru9I	TTAA	3 cut(s)	351, 402, 570
TscAI	CASTG	3 cut(s)	570, 672, 699
TseI	GCWGC	2 cut(s)	139, 287
TspDTI	ATGAA	3 cut(s)	485, 674, 689
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	3 cut(s)	570, 672, 699
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	1 cut(s)	156
ZrmI	AGTACT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.