Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Forward (+)

16136559 .. 16138647

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGAGCTTCGTCTCCGGAAGATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTATTACCAGACCCAAAGATGACGAGGCTGCTTGAGACAGAGACTAGCCCAGTTACTGGAAGCATGTGGACGTGGCCAAGCGATTGTGTTGCATACTTGGATTGTACTTGGAATCTTATTCAATTACTTGGGCAGTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATATTTTCAGAGACTCCCTTAAACAAAGAGTCAGCAATGCTGAAACTAAGTTTGTGTCTTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTTGATGTCCCTCTTACATCAGAAGAATCGAATCTCCGAGTGTTAACATGTATAAGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

181

Amino Acids

20.71

Weight (kDa)

8.9

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	248
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	2 cut(s)	99, 101
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	2 cut(s)	217, 435
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	59, 233, 256
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	4 cut(s)	19, 140, 146, 363
AlwNI	CAGNNNCTG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	139, 287
AsuHPI	GGTGA	2 cut(s)	16, 27
BalI	TGGCCA	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	126, 274
BccI	CCATC	2 cut(s)	18, 40
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	4 cut(s)	19, 140, 146, 363
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	3 cut(s)	102, 140, 288
BlsI	GCNGC	3 cut(s)	103, 141, 289
Bme1390I	CCNGG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	2 cut(s)	161, 172
Bse3DI	GCAATG	2 cut(s)	297, 400
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMI	GCAATG	2 cut(s)	297, 400
BseNI	ACTGG	2 cut(s)	161, 172
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	126, 274
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	4 cut(s)	19, 140, 146, 363
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	17
BspACI	CCGC	2 cut(s)	99, 101
BspANI	GGCC	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	297, 400
BsrI	ACTGG	2 cut(s)	161, 172
BssECI	CCNNGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	44, 305, 405
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	101
BstMAI	GTCTC	4 cut(s)	19, 140, 146, 363
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	178, 534
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	126, 274
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr42I	CCGCGG	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	216, 434
CviAII	CATG	3 cut(s)	175, 316, 531
CviJI	RGCY	7 cut(s)	9, 31, 104, 139, 159, 187, 274
CviKI_1	RGCY	7 cut(s)	9, 31, 104, 139, 159, 187, 274
CviQI	GTAC	2 cut(s)	216, 434
DdeI	CTNAG	3 cut(s)	44, 305, 405
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	3 cut(s)	178, 319, 534
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	174, 315, 530
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	102, 140, 288
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	3 cut(s)	102, 140, 288
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	102, 140, 288
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	3 cut(s)	178, 319, 534
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	6 cut(s)	40, 223, 371, 387, 509, 514
HpaI	GTTAAC	1 cut(s)	528
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	16, 27
Hpy166II	GTNNAC	3 cut(s)	180, 249, 528
Hpy188I	TCNGA	3 cut(s)	368, 505, 521
Hpy188III	TCNNGA	3 cut(s)	18, 352, 543
Hpy8I	GTNNAC	3 cut(s)	180, 249, 528
HpyAV	CCTTC	3 cut(s)	262, 264, 308
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	93, 203, 290
HpyF3I	CTNAG	3 cut(s)	44, 305, 405
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	178, 319, 534
Kpn2I	TCCGGA	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	528
KspI	CCGCGG	1 cut(s)	102
LpnPI	CCDG	7 cut(s)	31, 95, 122, 132, 153, 174, 360
Lsp1109I	GCAGC	2 cut(s)	126, 274
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	163
MboII	GAAGA	6 cut(s)	33, 44, 47, 322, 486, 518
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	3 cut(s)	86, 233, 355
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	365, 396
MnlI	CCTC	4 cut(s)	73, 129, 435, 504
Mox20I	TGGCCA	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	2 cut(s)	378, 527
Msp20I	TGGCCA	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	101
NlaIII	CATG	3 cut(s)	178, 319, 534
NspI	RCATGY	2 cut(s)	178, 534
PciI	ACATGT	1 cut(s)	530
PfeI	GAWTC	4 cut(s)	40, 223, 509, 514
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	103, 141, 289
PleI	GAGTC	2 cut(s)	365, 395
PpsI	GAGTC	2 cut(s)	365, 395
PscI	ACATGT	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	217, 435
RsaNI	GTAC	2 cut(s)	216, 434
SacII	CCGCGG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	378, 527
SatI	GCNGC	3 cut(s)	102, 140, 288
SchI	GAGTC	2 cut(s)	365, 396
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	4 cut(s)	11, 50, 185, 254
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	86, 233, 355
SsiI	CCGC	2 cut(s)	99, 101
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	512
TasI	AATT	3 cut(s)	86, 233, 355
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	4 cut(s)	40, 223, 509, 514
Tru1I	TTAA	2 cut(s)	378, 527
Tru9I	TTAA	2 cut(s)	378, 527
TseI	GCWGC	2 cut(s)	139, 287
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	2 cut(s)	178, 534
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.