Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Reverse (-)

35613658 .. 35615164

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG206400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACGAGGCTGCTTGAGATAGAGACTAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGGTTTGGTGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTTTAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATATTTTCAGAGACACCCTTAAACAAAGAGTCAGCGATGCTGAAACTGTTATTAATTTACACAATGCATTGGAGAAGTTTATGTCTTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTCGCCAAAGTTGATTTAGGAAGAGAATATGTTGATGTCCCTCTTACATCAAAAGAATCGAAACTCCGAGTGTTAACAGGTATAAGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

9.64

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	56
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	2 cut(s)	38, 65
AjiI	CACGTC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	17, 174
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	10, 98
AseI	ATTAAT	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	17, 174
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	2 cut(s)	11, 99
BlsI	GCNGC	2 cut(s)	12, 100
BmgBI	CACGTC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 65
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	38, 65
BseMI	GCAATG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	38, 65
BsmAI	GTCTC	2 cut(s)	17, 174
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	17, 174
BstNSI	RCATGY	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	2 cut(s)	46, 127
CviJI	RGCY	4 cut(s)	10, 30, 58, 85
CviKI_1	RGCY	4 cut(s)	10, 30, 58, 85
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	116
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	2 cut(s)	49, 130
FaiI	YATR	7 cut(s)	47, 96, 128, 171, 251, 321, 374
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	45, 126
Fnu4HI	GCNGC	2 cut(s)	11, 99
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	11, 99
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	2 cut(s)	11, 99
HaeIII	GGCC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	49, 130
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	2 cut(s)	198, 347
HpaI	GTTAAC	1 cut(s)	366
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	51, 366
Hpy188I	TCNGA	2 cut(s)	179, 359
Hpy188III	TCNNGA	2 cut(s)	163, 381
Hpy8I	GTNNAC	2 cut(s)	51, 366
HpyAV	CCTTC	2 cut(s)	75, 119
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	101, 236
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	49, 130
KspAI	GTTAAC	1 cut(s)	366
LpnPI	CCDG	4 cut(s)	24, 45, 171, 354
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	68
MboII	GAAGA	2 cut(s)	133, 324
MluCI	AATT	2 cut(s)	166, 223
MlyI	GAGTC	1 cut(s)	207
MnlI	CCTC	3 cut(s)	54, 273, 342
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	4 cut(s)	132, 189, 222, 365
NlaIII	CATG	2 cut(s)	49, 130
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	12, 100
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	132, 189, 222, 365
SatI	GCNGC	2 cut(s)	11, 99
SchI	GAGTC	1 cut(s)	207
SetI	ASST	3 cut(s)	56, 65, 373
SfaNI	GCATC	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	2 cut(s)	166, 223
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	166, 223
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	4 cut(s)	132, 189, 222, 365
Tru9I	TTAA	4 cut(s)	132, 189, 222, 365
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	10, 98
Tsp45I	GTSAC	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	222
XceI	RCATGY	1 cut(s)	49
XspI	CTAG	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.