Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Forward (+)

4447134 .. 4450293

Gene Structure 3160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCGAGCTTCGTCTCCGGAAGATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTATTGCCAAACCCAAAGATGACGAGGCTGCTTGAGACGGAGACTAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGCGATTGTGTTGCATACTTGGATTGTACTTGGAATCTTATTCAATTAATTGGGCACTCTACCTTCAATGATGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATTTTCTCAGAGACTCCCTTAAACAAAGAGTCAGCAATGCTGAAACTGTTATTAATTTACACAATGCATTGGAGAAGTTTGTGTCTTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTTGATGTCCCTCTTACATCAGAAGAATCGAAACTCCGACTGTTAACAGAAAGAGAAGAGAGGGAGGAGGAGAAAAGCAAGGCAATCAGGGAGAAAGAAGAAGAAGAAGAGAAAAGAGGGAGCACGGGGAAAAGAAAGAAAAAGAAGAAGAAGAAGAAGAAAGAGATGAACGAAGGAGAATGGGAGTTTGATTTTGCTGCTCTTGAAACTGAACTGTGGGAAGGCAAAGGGAGCAAGATTTCAGAAGTGAAGGGTTTCAATTTGGGCTATTCAGTATATATGGTTGTTTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

269

Amino Acids

31.03

Weight (kDa)

9.01

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	2 cut(s)	99, 101
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	2 cut(s)	217, 462
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AgsI	TTSAA	5 cut(s)	59, 233, 256, 716, 769
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	4 cut(s)	19, 140, 146, 363
AlwNI	CAGNNNCTG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	139, 287, 707
AseI	ATTAAT	2 cut(s)	236, 411
Asp700I	GAANNNNTTC	1 cut(s)	764
AsuHPI	GGTGA	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	635
BbvI	GCAGC	3 cut(s)	126, 274, 694
BccI	CCATC	2 cut(s)	18, 40
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	4 cut(s)	19, 140, 146, 363
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	803
BisI	GCNGC	4 cut(s)	102, 140, 288, 708
BlsI	GCNGC	4 cut(s)	103, 141, 289, 709
Bme1390I	CCNGG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	2 cut(s)	297, 400
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMI	GCAATG	2 cut(s)	297, 400
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	3 cut(s)	95, 590, 593
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	126, 274, 694
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	4 cut(s)	19, 140, 146, 363
BsmBI	CGTCTC	2 cut(s)	19, 140
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	246, 635
Bsp13I	TCCGGA	1 cut(s)	17
BspACI	CCGC	2 cut(s)	99, 101
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	297, 400
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	406, 552, 726
Bst6I	CTCTTC	3 cut(s)	496, 561, 612
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	44, 305, 365
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	101
BstMAI	GTCTC	4 cut(s)	19, 140, 146, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	741
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	803
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	126, 274, 694
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr42I	CCGCGG	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	216, 461
CviAII	CATG	2 cut(s)	175, 316
CviJI	RGCY	8 cut(s)	9, 31, 104, 139, 159, 187, 274, 777
CviKI_1	RGCY	8 cut(s)	9, 31, 104, 139, 159, 187, 274, 777
CviQI	GTAC	2 cut(s)	216, 461
DdeI	CTNAG	3 cut(s)	44, 305, 365
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	3 cut(s)	496, 561, 612
EarI	CTCTTC	3 cut(s)	496, 561, 612
EcoRII	CCWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	19, 140
FaeI	CATG	2 cut(s)	178, 319
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	174, 315
Fnu4HI	GCNGC	4 cut(s)	102, 140, 288, 708
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	4 cut(s)	102, 140, 288, 708
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	4 cut(s)	102, 140, 288, 708
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	178, 319
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HinfI	GANTC	5 cut(s)	40, 223, 371, 387, 536
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	180, 555
Hpy188I	TCNGA	4 cut(s)	368, 532, 548, 754
Hpy188III	TCNNGA	3 cut(s)	18, 352, 713
Hpy8I	GTNNAC	2 cut(s)	180, 555
HpyAV	CCTTC	6 cut(s)	262, 264, 308, 677, 725, 754
HpyCH4III	ACNGT	3 cut(s)	406, 552, 726
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	93, 203, 290, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	741
HpyF3I	CTNAG	3 cut(s)	44, 305, 365
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	178, 319
Kpn2I	TCCGGA	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	555
KspI	CCGCGG	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	630, 741
LpnPI	CCDG	7 cut(s)	31, 95, 122, 153, 174, 360, 583
Lsp1109I	GCAGC	3 cut(s)	126, 274, 694
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	246, 635
MluCI	AATT	6 cut(s)	86, 233, 237, 355, 412, 769
MlyI	GAGTC	2 cut(s)	365, 396
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	8 cut(s)	73, 129, 462, 531, 564, 568, 571, 620
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	4 cut(s)	236, 378, 411, 554
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	741
NlaIII	CATG	2 cut(s)	178, 319
NmeAIII	GCCGAG	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	40, 223, 536
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	103, 141, 289, 709
PleI	GAGTC	2 cut(s)	365, 395
PpsI	GAGTC	2 cut(s)	365, 395
PshBI	ATTAAT	2 cut(s)	236, 411
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	217, 462
RsaNI	GTAC	2 cut(s)	216, 461
SacII	CCGCGG	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	236, 378, 411, 554
SatI	GCNGC	4 cut(s)	102, 140, 288, 708
SchI	GAGTC	2 cut(s)	365, 396
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	246, 635
SetI	ASST	4 cut(s)	11, 50, 185, 254
SfcI	CTRYAG	1 cut(s)	803
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	6 cut(s)	86, 233, 237, 355, 412, 769
SsiI	CCGC	2 cut(s)	99, 101
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	406, 552, 726
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	539
TasI	AATT	6 cut(s)	86, 233, 237, 355, 412, 769
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	40, 223, 536
Tru1I	TTAA	4 cut(s)	236, 378, 411, 554
Tru9I	TTAA	4 cut(s)	236, 378, 411, 554
TseI	GCWGC	3 cut(s)	139, 287, 707
TspDTI	ATGAA	2 cut(s)	276, 692
TspGWI	ACGGA	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	167
VspI	ATTAAT	2 cut(s)	236, 411
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.