Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Reverse (-)

30121917 .. 30124267

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018463

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTGAGCTTCGTCTCCGGAAGATGGAAGCCATCACCAAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCAGCTCTCTTGGTATTGCCAAACCCAAAGTTGACGAGGCTGCTTGAGACGGAGACTAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGCGATTGTGTTGCATACTTGGATTGTACTTGGAATCTTATTCAATTAGTTGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTTCTTGTCGTGAATTATATTTTCAGAGACTCCCTCAAACAAAGAGTCAGCGATGCTGAAACTGTTATTAATTTACACAATGCATTGGAGAAGTTTGTGTATTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTTGATGTCCCTCTTACATCAGAAGAATCGAAACTCCGAGTGTTAACAGGTATAAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

191

Amino Acids

21.78

Weight (kDa)

8.96

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	1 cut(s)	99
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	2 cut(s)	217, 462
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AgsI	TTSAA	3 cut(s)	59, 233, 256
AjiI	CACGTC	1 cut(s)	183
AluBI	AGCT	2 cut(s)	9, 104
AluI	AGCT	2 cut(s)	9, 104
Alw26I	GTCTC	4 cut(s)	19, 140, 146, 363
AlwNI	CAGNNNCTG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	101, 139, 287
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AseI	ATTAAT	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	16, 27
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	113, 126, 274
BccI	CCATC	2 cut(s)	18, 40
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcoDI	GTCTC	4 cut(s)	19, 140, 146, 363
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	3 cut(s)	102, 140, 288
BlsI	GCNGC	3 cut(s)	103, 141, 289
BmgBI	CACGTC	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
BpuEI	CTTGAG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	17
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	113, 126, 274
BshFI	GGCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	4 cut(s)	19, 140, 146, 363
BsmBI	CGTCTC	2 cut(s)	19, 140
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	17
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	496
BstDEI	CTNAG	2 cut(s)	44, 305
BstF5I	GGATG	1 cut(s)	478
BstMAI	GTCTC	4 cut(s)	19, 140, 146, 363
BstNSI	RCATGY	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	113, 126, 274
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	216, 461
CviAII	CATG	2 cut(s)	175, 316
CviJI	RGCY	7 cut(s)	9, 31, 104, 139, 159, 187, 274
CviKI_1	RGCY	7 cut(s)	9, 31, 104, 139, 159, 187, 274
CviQI	GTAC	2 cut(s)	216, 461
DdeI	CTNAG	2 cut(s)	44, 305
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
EcoT22I	ATGCAT	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	19, 140
FaeI	CATG	2 cut(s)	178, 319
FaiI	YATR	9 cut(s)	91, 176, 205, 285, 317, 321, 360, 510, 563
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	174, 315
Fnu4HI	GCNGC	3 cut(s)	102, 140, 288
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	102, 140, 288
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	102, 140, 288
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	178, 319
HincII	GTYRAC	2 cut(s)	132, 555
HindII	GTYRAC	2 cut(s)	132, 555
HinfI	GANTC	4 cut(s)	223, 371, 387, 536
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	16, 27
Hpy166II	GTNNAC	3 cut(s)	132, 180, 555
Hpy188I	TCNGA	4 cut(s)	368, 532, 548, 572
Hpy188III	TCNNGA	2 cut(s)	18, 352
Hpy8I	GTNNAC	3 cut(s)	132, 180, 555
HpyAV	CCTTC	3 cut(s)	262, 264, 308
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	93, 203, 290, 425
HpyF3I	CTNAG	2 cut(s)	44, 305
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	178, 319
Kpn2I	TCCGGA	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	555
LpnPI	CCDG	4 cut(s)	31, 153, 174, 543
Lsp1109I	GCAGC	3 cut(s)	113, 126, 274
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	182
MboII	GAAGA	6 cut(s)	33, 44, 47, 322, 513, 545
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	86, 233, 355, 412
MlyI	GAGTC	2 cut(s)	365, 396
MnlI	CCTC	5 cut(s)	73, 129, 386, 462, 531
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	2 cut(s)	411, 554
MspI	CCGG	1 cut(s)	18
NlaIII	CATG	2 cut(s)	178, 319
NmeAIII	GCCGAG	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	223, 536
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	103, 141, 289
PleI	GAGTC	2 cut(s)	365, 395
PpsI	GAGTC	2 cut(s)	365, 395
PshBI	ATTAAT	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	217, 462
RsaNI	GTAC	2 cut(s)	216, 461
SaqAI	TTAA	2 cut(s)	411, 554
SatI	GCNGC	3 cut(s)	102, 140, 288
SchI	GAGTC	2 cut(s)	365, 396
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	11, 50, 106, 185, 254, 562
SfaNI	GCATC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	86, 233, 355, 412
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	539
TasI	AATT	4 cut(s)	86, 233, 355, 412
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	223, 536
Tru1I	TTAA	2 cut(s)	411, 554
Tru9I	TTAA	2 cut(s)	411, 554
TseI	GCWGC	3 cut(s)	101, 139, 287
TspGWI	ACGGA	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	411
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.