Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Forward (+)

75449691 .. 75451737

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTGAGCTTCGTCTCCGGAATATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGTAGTTCCGCGGCTCTCCTGGTATTGCCAAAACCAAAGATGACGAGGCTGCTTGAGACGGAGACTAGCCCAATTGCTGGAAGCATGTGGACGTGGCCGAGCGATTGTGTTGCATACTTGGATTGTACTTGGAATCTTATTCAATTAGTTGGGCACTCTACCTTCAATGAAGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATCACCTAAATGCTTCATTTTTCTTGCATTTTGATTTTTCTAGTTACTACCAACTTGCTGGCTGTCTGGTCTTGGTTGAAAATGAAGATGACATTAGTAGTTTGTTCATCGATCACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

153

Amino Acids

17.69

Weight (kDa)

7.68

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	2 cut(s)	99, 101
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AgsI	TTSAA	4 cut(s)	59, 233, 256, 419
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	3 cut(s)	19, 140, 146
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	139, 287
AsuHPI	GGTGA	4 cut(s)	16, 27, 335, 446
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	126, 274
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	19, 140, 146
BfaI	CTAG	2 cut(s)	156, 381
BisI	GCNGC	3 cut(s)	102, 140, 288
BlsI	GCNGC	3 cut(s)	103, 141, 289
Bme1390I	CCNGG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse3DI	GCAATG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMI	GCAATG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	126, 274
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	3 cut(s)	19, 140, 146
BsmBI	CGTCTC	2 cut(s)	19, 140
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	340, 451
BspACI	CCGC	2 cut(s)	99, 101
BspANI	GGCC	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	450
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	340, 451
Bst2UI	CCWGG	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	44, 305
BstDSI	CCRYGG	1 cut(s)	99
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	343, 454
BstMAI	GTCTC	3 cut(s)	19, 140, 146
BstMBI	GATC	2 cut(s)	340, 451
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	246
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	126, 274
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	398
Bsu15I	ATCGAT	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	400
Cfr42I	CCGCGG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	175, 316
CviJI	RGCY	8 cut(s)	9, 31, 104, 139, 159, 187, 274, 402
CviKI_1	RGCY	8 cut(s)	9, 31, 104, 139, 159, 187, 274, 402
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	44, 305
DpnI	GATC	2 cut(s)	342, 453
DpnII	GATC	2 cut(s)	340, 451
EaeI	YGGCCR	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	108
Esp3I	CGTCTC	2 cut(s)	19, 140
FaeI	CATG	2 cut(s)	178, 319
FaiI	YATR	7 cut(s)	25, 91, 176, 205, 285, 317, 321
FatI	CATG	2 cut(s)	174, 315
Fnu4HI	GCNGC	3 cut(s)	102, 140, 288
Fsp4HI	GCNGC	3 cut(s)	102, 140, 288
FspBI	CTAG	2 cut(s)	156, 381
GluI	GCNGC	3 cut(s)	102, 140, 288
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	178, 319
HinfI	GANTC	2 cut(s)	40, 223
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	4 cut(s)	16, 27, 335, 446
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	262, 264, 308
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	203, 290, 367
HpyF3I	CTNAG	2 cut(s)	44, 305
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	178, 319
Kpn2I	TCCGGA	1 cut(s)	17
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	340, 451
LpnPI	CCDG	6 cut(s)	31, 95, 122, 153, 384, 392
Lsp1109I	GCAGC	2 cut(s)	126, 274
MaeI	CTAG	2 cut(s)	156, 381
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	2 cut(s)	342, 453
MboI	GATC	2 cut(s)	340, 451
MboII	GAAGA	5 cut(s)	44, 47, 272, 322, 437
MfeI	CAATTG	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	86, 162, 233
MnlI	CCTC	2 cut(s)	73, 129
MroI	TCCGGA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	101
NdeII	GATC	2 cut(s)	340, 451
NlaIII	CATG	2 cut(s)	178, 319
NmeAIII	GCCGAG	1 cut(s)	213
NspI	RCATGY	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	40, 223
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	103, 141, 289
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	348
SacII	CCGCGG	1 cut(s)	102
SatI	GCNGC	3 cut(s)	102, 140, 288
Sau3AI	GATC	2 cut(s)	340, 451
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	11, 50, 185, 254, 348, 459
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	86, 162, 233
SsiI	CCGC	2 cut(s)	99, 101
SspMI	CTAG	2 cut(s)	156, 381
StyD4I	CCNGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	86, 162, 233
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	40, 223
TseI	GCWGC	2 cut(s)	139, 287
TspDTI	ATGAA	4 cut(s)	273, 345, 436, 438
TspGWI	ACGGA	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	2 cut(s)	156, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.