Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Reverse (-)

56606163 .. 56608969

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGAGCTTCGTCTCCGGAAGATGGATGCCATCACCGAATCTTAGGTTTCTTATTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCTGCGGCTCTCCTGGTATTGCCAAACCCAAAGATGACGAGGCTGCTTGAGACGGAGACTAGCCCAGTTGCTGGAAGCATGTGGATGTGGCCGAGCGATTGTGTTGCATACTTGGATTGTACTTGGAATCTTATTCAATTAGTTGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATTTTTTCAGAGACTCCCTTAAACAAAGAGTCAGCAATGCTGAAACTGTGAGTAATTTACACAATGCATTGGAGAAGTTTGTGTCTTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTTGATGTCCCTCTTACATCAGAAGAATCGAAACTCCGAGTGTTAACAGCGTTGTTTACACCTCAACATGCAATTACCTTGAACTCTTTTTCTGAGTCACTGAGCTTCTTATTGTCAACCTTGCACTTTCAACTGTCCAGGGTTTCTTTTACGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

223

Amino Acids

25.54

Weight (kDa)

9.17

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	185
AfaI	GTAC	2 cut(s)	217, 462
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AgsI	TTSAA	5 cut(s)	59, 233, 256, 592, 641
AjnI	CCWGG	2 cut(s)	108, 647
AluBI	AGCT	2 cut(s)	9, 615
AluI	AGCT	2 cut(s)	9, 615
Alw26I	GTCTC	4 cut(s)	19, 140, 146, 363
AlwNI	CAGNNNCTG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	139, 287
AsuHPI	GGTGA	2 cut(s)	16, 27
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	126, 274
BccI	CCATC	2 cut(s)	18, 40
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	110, 649
BcoDI	GTCTC	4 cut(s)	19, 140, 146, 363
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	3 cut(s)	102, 140, 288
BlsI	GCNGC	3 cut(s)	103, 141, 289
Bme1390I	CCNGG	2 cut(s)	110, 649
BmrFI	CCNGG	2 cut(s)	110, 649
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	648
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	1 cut(s)	161
Bse3DI	GCAATG	2 cut(s)	297, 400
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	110, 649
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	33, 186, 478
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMI	GCAATG	2 cut(s)	297, 400
BseMII	CTCAG	2 cut(s)	594, 602
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	126, 274
BshFI	GGCC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	4 cut(s)	19, 140, 146, 363
BsmBI	CGTCTC	2 cut(s)	19, 140
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	17
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	595, 603
BspEI	TCCGGA	1 cut(s)	17
BsrDI	GCAATG	2 cut(s)	297, 400
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	110, 649
Bst4CI	ACNGT	2 cut(s)	406, 645
Bst6I	CTCTTC	1 cut(s)	496
BstDEI	CTNAG	4 cut(s)	44, 305, 603, 611
BstF5I	GGATG	3 cut(s)	33, 186, 478
BstMAI	GTCTC	4 cut(s)	19, 140, 146, 363
BstNI	CCWGG	2 cut(s)	110, 649
BstNSI	RCATGY	2 cut(s)	178, 581
BstSCI	CCNGG	2 cut(s)	108, 647
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	126, 274
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	33, 186, 478
BtsIMutI	CAGTG	1 cut(s)	608
CaiI	CAGNNNCTG	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	216, 461
CviAII	CATG	3 cut(s)	175, 316, 578
CviJI	RGCY	7 cut(s)	9, 104, 139, 159, 187, 274, 615
CviKI_1	RGCY	7 cut(s)	9, 104, 139, 159, 187, 274, 615
CviQI	GTAC	2 cut(s)	216, 461
DdeI	CTNAG	4 cut(s)	44, 305, 603, 611
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	108, 647
EcoT22I	ATGCAT	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	19, 140
FaeI	CATG	3 cut(s)	178, 319, 581
FaiI	YATR	8 cut(s)	91, 176, 205, 285, 317, 321, 510, 579
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	174, 315, 577
Fnu4HI	GCNGC	3 cut(s)	102, 140, 288
FokI	GGATG	3 cut(s)	40, 193, 485
Fsp4HI	GCNGC	3 cut(s)	102, 140, 288
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	3 cut(s)	102, 140, 288
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	3 cut(s)	178, 319, 581
HincII	GTYRAC	2 cut(s)	555, 627
HindII	GTYRAC	2 cut(s)	555, 627
HinfI	GANTC	6 cut(s)	40, 223, 371, 387, 536, 605
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	16, 27
Hpy166II	GTNNAC	3 cut(s)	555, 567, 627
Hpy188I	TCNGA	4 cut(s)	368, 532, 548, 604
Hpy188III	TCNNGA	2 cut(s)	18, 352
Hpy8I	GTNNAC	3 cut(s)	555, 567, 627
HpyAV	CCTTC	3 cut(s)	262, 264, 308
HpyCH4III	ACNGT	2 cut(s)	406, 645
HpyCH4V	TGCA	6 cut(s)	93, 203, 290, 425, 581, 634
HpyF3I	CTNAG	4 cut(s)	44, 305, 603, 611
Hsp92II	CATG	3 cut(s)	178, 319, 581
Kpn2I	TCCGGA	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	555
LpnPI	CCDG	8 cut(s)	31, 95, 122, 153, 174, 360, 634, 661
Lsp1109I	GCAGC	2 cut(s)	126, 274
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	606
MboII	GAAGA	4 cut(s)	33, 322, 513, 545
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	6 cut(s)	86, 233, 355, 412, 582, 667
MlyI	GAGTC	3 cut(s)	365, 396, 614
MnlI	CCTC	5 cut(s)	73, 129, 462, 531, 582
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	3 cut(s)	378, 554, 670
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	110, 649
MvaI	CCWGG	2 cut(s)	110, 649
NlaIII	CATG	3 cut(s)	178, 319, 581
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	606
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	2 cut(s)	178, 581
PfeI	GAWTC	3 cut(s)	40, 223, 536
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	103, 141, 289
PleI	GAGTC	3 cut(s)	365, 395, 613
PpsI	GAGTC	3 cut(s)	365, 395, 613
Psp6I	CCWGG	2 cut(s)	108, 647
PspGI	CCWGG	2 cut(s)	108, 647
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	217, 462
RsaNI	GTAC	2 cut(s)	216, 461
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	378, 554, 670
SatI	GCNGC	3 cut(s)	102, 140, 288
SchI	GAGTC	3 cut(s)	365, 396, 614
ScrFI	CCNGG	2 cut(s)	110, 649
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	11, 50, 254, 574, 590, 617, 632
SfaNI	GCATC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	6 cut(s)	86, 233, 355, 412, 582, 667
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	108, 647
TaaI	ACNGT	2 cut(s)	406, 645
TaqI	TCGA	1 cut(s)	539
TasI	AATT	6 cut(s)	86, 233, 355, 412, 582, 667
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	40, 223, 536
Tru1I	TTAA	3 cut(s)	378, 554, 670
Tru9I	TTAA	3 cut(s)	378, 554, 670
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	2 cut(s)	139, 287
Tsp45I	GTSAC	1 cut(s)	606
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	2 cut(s)	178, 581
XspI	CTAG	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.