Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013756

Physical Location & Seq

Genomic Coordinates Forward (+)

42999228 .. 43003551

Gene Structure 4324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG170900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCGACAGCATTGTGTCGCATACTTGGATTGTACATGGATTCTTATTCAATTAGTGGGGCACTCTACTTTCAATGACGAACAAAGAAGGCTTTCCGTTTATGCTGCAATGTTCCTTCCAATTAGGAAGACAATGTATAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATATTTTCAGAGACTCCCTTAAACAAGGAGTCAGCAATGCTGAAACTGTTATTAATTTACACAATGCATTGGAGAAGTTTTTGTCTTTGCTTCCTCACTTTGTACCAAATGGGGATGTAAAACTTGCCAAAGTTGATATGGGAAGAGAATATGTTGATGTCCCTCTTACATCGAAAGAATCGAATCTCCGAGTGTTAACAGGTCTAGATAAAGTCTGGGATGTAAAGCCATTACTTAATGGAACCCTGTCATGGATGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACTTGCATGGCAGCTTGCTTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

178

Amino Acids

20.16

Weight (kDa)

8.97

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0141651 RchiOBHm_Chr4g0411731 RchiOBHm_Chr4g0411861
rosa_laevigata	RLG00000013187 RLG00000018463 RLG00000022578 RLG00000022690 RLG00000036212
rosa_roxburghii	Rroxscaffold_2G00137600 Rroxscaffold_6G00395140
rosa_rugosa	Rorug06G0446000
rosa_samantha	Rh4AG170900 Rh4BG166900 Rh4BG206400 Rh6DG222700 Rh7AG392900 Rh7BG049000
rosa_wichuraiana	Rw2G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	34, 279
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	50, 73
AhdI	GACNNNNNGTC	1 cut(s)	460
AluBI	AGCT	3 cut(s)	441, 483, 498
AluI	AGCT	3 cut(s)	441, 483, 498
Alw26I	GTCTC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	104, 438, 495
AseI	ATTAAT	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	454
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	91, 450, 507
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	512
BisI	GCNGC	3 cut(s)	105, 439, 496
BlsI	GCNGC	3 cut(s)	106, 440, 497
Bme18I	GGWCC	1 cut(s)	454
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse3DI	GCAATG	2 cut(s)	114, 217
BseGI	GGATG	3 cut(s)	295, 400, 435
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMI	GCAATG	2 cut(s)	114, 217
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	91, 450, 507
BslFI	GGGAC	2 cut(s)	320, 522
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	320, 522
BsmI	GAATGC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	516
BsrDI	GCAATG	2 cut(s)	114, 217
BsrGI	TGTACA	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	500
BstF5I	GGATG	3 cut(s)	295, 400, 435
BstMAI	GTCTC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	512
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	91, 450, 507
BstV2I	GAAGAC	1 cut(s)	134
BtsCI	GGATG	3 cut(s)	295, 400, 435
Cac8I	GCNNGC	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	33, 278
CviAII	CATG	3 cut(s)	36, 426, 491
CviJI	RGCY	6 cut(s)	91, 403, 441, 483, 498, 534
CviKI_1	RGCY	6 cut(s)	91, 403, 441, 483, 498, 534
CviQI	GTAC	2 cut(s)	33, 278
DriI	GACNNNNNGTC	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	313
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	3 cut(s)	39, 429, 494
FaiI	YATR	9 cut(s)	22, 37, 102, 138, 177, 314, 327, 427, 492
FaqI	GGGAC	2 cut(s)	320, 522
FatI	CATG	3 cut(s)	35, 425, 490
Fnu4HI	GCNGC	3 cut(s)	105, 439, 496
FokI	GGATG	3 cut(s)	302, 407, 442
Fsp4HI	GCNGC	3 cut(s)	105, 439, 496
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	3 cut(s)	105, 439, 496
GsuI	CTGGAG	1 cut(s)	470
Hin1II	CATG	3 cut(s)	39, 429, 494
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HinfI	GANTC	5 cut(s)	40, 188, 204, 353, 358
HpaI	GTTAAC	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	185, 365
Hpy188III	TCNNGA	3 cut(s)	169, 380, 449
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	2 cut(s)	81, 125
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	107, 242, 438, 490, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	39, 429, 494
KspAI	GTTAAC	1 cut(s)	372
LpnPI	CCDG	5 cut(s)	177, 360, 376, 434, 434
Lsp1109I	GCAGC	3 cut(s)	91, 450, 507
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	380
MboII	GAAGA	2 cut(s)	139, 330
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	4 cut(s)	50, 120, 172, 229
MlyI	GAGTC	2 cut(s)	182, 213
MnlI	CCTC	5 cut(s)	279, 348, 445, 510, 535
Mph1103I	ATGCAT	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	91
MseI	TTAA	5 cut(s)	195, 228, 371, 411, 443
Mva1269I	GAATGC	1 cut(s)	526
MwoI	GCNNNNNNNGC	1 cut(s)	480
NlaIII	CATG	3 cut(s)	39, 429, 494
NlaIV	GGNNCC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PctI	GAATGC	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	40, 353, 358
PkrI	GCNGC	3 cut(s)	106, 440, 497
PleI	GAGTC	2 cut(s)	182, 212
PpsI	GAGTC	2 cut(s)	182, 212
PshBI	ATTAAT	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	516
RsaI	GTAC	2 cut(s)	34, 279
RsaNI	GTAC	2 cut(s)	33, 278
SaqAI	TTAA	5 cut(s)	195, 228, 371, 411, 443
SatI	GCNGC	3 cut(s)	105, 439, 496
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	2 cut(s)	182, 213
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	4 cut(s)	379, 443, 485, 500
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	4 cut(s)	50, 120, 172, 229
SspMI	CTAG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	347, 356
TasI	AATT	4 cut(s)	50, 120, 172, 229
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	3 cut(s)	40, 353, 358
Tru1I	TTAA	5 cut(s)	195, 228, 371, 411, 443
Tru9I	TTAA	5 cut(s)	195, 228, 371, 411, 443
TseI	GCWGC	3 cut(s)	104, 438, 495
TspGWI	ACGGA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	228
XbaI	TCTAGA	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.