Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007704

Physical Location & Seq

Genomic Coordinates Reverse (-)

27414203 .. 27429134

Gene Structure 14932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013189

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4107 bp

ATGGCGGCGGCGAGTGCCCCGTGGCAGCCACAGAAGGAGGGCCTCACGGCGATCTGTGGGTTGCTGGAGCAGCAGATTTCGCCGACTTCCTCCGCTGACAAGTCTCAGATTTGGCACCAACTCCAAACCTACTCTCAGAACCCCGAGTTCCATAATTACCTTGTTTTCATTCTCACACGCGCCGAGGGTACATCAGTAGAGATTCGACAAGCGGCCGGGTTGCTGTTGAAAAACAACCTTAGAAATGCATATAACTCCATGGATCCTGCATACCAGCAGTATATCAAGTCGGAATTACTGCCTTGCTTGGGATCACCAGATAGGCACATCAGGTCTACAGTAGGCACCATTATAAGTGTTGTTGTTCAACTCGGAGGAGTTATGGGATGGCCGGAATTACTGCAAGCTCTTGTAACTTGTTTGGACAGTAATGACGTAAATCACATGGAAGGTGCTATGGATGCATTATCCAAGGTTTGTGAGGATATACCTCAGGTGCTTGATTCAGATGTACCTGGGTTGCCTGAACGCCCCATCAACATATTCCTTCCTAGAATGCTTAAGCTTTTCCAGTCACCGCATTCATCCCTCAGAAAGCTTTCCGTGGGTTCGGTAAATCAATACATTATGTTGATGCCAGCGGCTTTATATGCGTCTATGGATCAATATCTTCAGGGGTTGTTTGTCCTTGCTAATGACGCTTCGTCAGAAGTGAGGAAATTGGTATGTGCAGCATTTGTTCAGCTGATTGAAGTTCGTCCAGGGTTCTTGGAGCCACAGTTGAGGAACTTAATTGAATACATGTTGCAAGTCAACAAGGACACTGATGAAGAAGTTGCCCTTGAAGCCTGTGAATTCTGGTCTGCATATTGTGAGGCTGAGTTACCACCTGAGATCTTAAGAGAGTTTTTACCCCGTCTAATTCCGATTTTGCTGTCAAACATGGCTTACGCTGAGGATGATGAGTCCCTTGTTGATGCTGAGGAGGATGGCTCTGTCCCAGACCGTGATCAGGATATCAAACCTCGTTTTCATTCATCGCGGTTTCATGGATCTGATGGTGCGGAAGAAGATGATGATGATATTGTCAATGTTTGGAATTTACGGAAATGCAGTGCAGCGGCTGTTGATATCCTGTCAACTGTGTTTGGGGATGAGATTCTCCCAACACTGATGGCCTTTGTTCAGGCCAAGTTGTCCAACAGTGATGATGAAACATGGAAAGAAAGGGAAGCTGCTGTTTTGGCTCTAGGTGCAGTGGCTGAAGGTTGCATTATTGGTCTTTATCCTCATTTGAATGAGATCATTGCGTATCTTATTCCTCTTTTAGACGATAAGTTTCCACTTATAAGGAGTATATCCTGTTGGACACTTTCACGTTTCAGCAAGTTCATTGTTGAGGGTGTTGGACATCAACAAGGTTATGAGCAGTTTGACAAGGTTCTTCTGGGTCTCTTAAGAAGAATATTAGATAATAACAAGCGGGTACAGGAGGCTGCTTGCTCAGCTTTTGCGACACTTGAAGAGGAGGCGGCTGATGCGTTGGCACCACGCCTGGAAACTATTTTACAACACCTTATGTGCGCTTTTGGGAAATATCAGAGACGGAACCTTAGAATTGTATATGATGCCATTGGAACTCTAGCAGATGCTGTCGGTGGGGAGTTGAATCGTCCCAATTATCTTGAAATTCTGATGCCACCATTGATTGCAAAGTGGCAACAACTTGCAAATTCAGATAAAGATCTGTTTCCGTTGCTGGAGTGCTTTACTTCTATTTCGCAGGCATTGGGTGCCGGATTCTCTCCATTCGCAGAGCCGGTGTTTCAGAGGTGCATAAGCATCATACAGTCCCAACAAGTTGCCAAGGTTGATCCGGTCGCTTCAGGAGTCCAGTATGATAAAGAATTTATTGTGTGCTCTCTTGATCTGCTTTCTGGACTTACAGAAGGTCTTGGTAGTGGGATAGAAAGTTTGGTTTCACAAAGCAATTTGAAGGACCTGCTTTTGCACTGTTGCATGGATGATGCTTCGGATGTCCGACAGAGTGGCTTTGCCTTACTTGGGGATCTTGCAAGAGTATGCCCTGTTCATTTGCGTCCTCGTTTGCCGGAATTTCTTGATGTTGCTGCCAAACAACTGAATACTCCTAAGCTGAAGGAAACTGTTTCAGTGGCAAATAATGCGTGTTGGGCCATTGGTGAGTTAGCAGTCAAGGTTCATCAAGAAATTTCTCCAATTGTTTTGACGGTCATGTCTTGCTTAGTCCCCATACTGCAGCATCCAGAGGCGCTCAACAAGTCACTAATTGAGAACAGTGCTATCACGCTTGGGAGGCTTGCATATGTTTGTCCAGAGCTTGTGGCTCCGCATATGGAGCATTTCATGCAGCCATGGTGCATTGCTTTGTCAATGATACGTGATGATATAGAAAAGGAGGATGCATTCCGAGGTCTATGCGCATTGGTTAGAACAAATCCATCCGGAGCATTAAGTTCACTCATATATATGTGCAATGCTATTGCCAGTTGGCATGAAATAAGGAGTGAAGAGCTACATAATGCAGTTTGCCAGGTGTTACACGGTTATAAGCAGATGCTTGTGAATGGAGCGTGGGAACAGTGTATGTCTGCTTTGGAGCCACAGGGTGGAAAGAAATTTTTGCTGTTTCAAGCAGCTGTGATTGCTCAACAGAGAAGATCAAATCAAGAATGTCTCATCCAGAACCTCAGCCAGCCACCGAGCTCAGCCACGAGCCAGAGAACGAGGAGTCAGCCTCTCTTAGCAAAAAGGCAGCAAAGAAAAAAAGCGGCCAAGCTCGAGAAGCTCCGTCGCCGCCAGGAGCGAGAATCAGCGACCGCCGCGGCTACCGCTAATCAGTACTCCGCCGCGCCGGAGGACCAACTCTCCGCGAACTATGGCGACGTGTCACTCATTCAGCTCCAGTCGACGAAGATGGTCGACGTCAATCTTCGGACGGAGGTCGGAGCTCTAACTGAGGCGTTGAAGGACCAGAAGGTTCGGATACGCGGCCGTGCGCAGACGATTAGACCCACCGGGGAGAAGCTGGCGTTTATTGTGGTCAGAGAGAAGGGGTTCACGGTTCAGTGCGTCGTGACGGTTCAGCCGGAGATAGTGAGCTGTCAGATGGTGAAGTACGCGTCGAAGTTGAGCCGTGAGTCGATTATTGACATTGAAGGGATTGTGTCTAAACCCGATATGGCAATTGCAGGCGCTTCACAGCAGGTGGATGTGCACGTTAGAAAGTTGTACTGTATAAGTAGGGCTGCAGTTTTACCTATTGAAATTGAGAATGCTGCTCGAACGGCCAACCGGGGGATTTTCCGAATCCAGAGTCAAGTTGGAACCATCTTCAGGCAGTTCTTGCTGTCCGAAGGGTTTATTGAAATCCATACACCAAAACTGATCGCTGGTTCAAGTGAAGGTGGGGCTTCGGTGTTTAAACTGGACTACGTGAAGGGGCAACCTGCCTGCCTTGCCCAGTCACCGCAGCTCCACAAGCAGATGTCCATCTGTGCTGACTTTGGTAGTGTTTTCGAGGTTGGTTCTGTTTTCAGAGCTGAGAACTCTGATACGCATAGACATTTATGTGAGTTCACTGGTCTCGATATTGAGATGGAGATTGAGTGGAGCTATTTTGAGGTTATGGATATTGTTAACAGGTTGTTTGTGAATATGTTTGACTATTTGAACAAAAATTGTGAGAAGGAACTTGAAGCTGTACGAAGGCAGTATCCCTTCGAACCATTAAAGTACTTGCCTGAGACTCTACGTCTCACTTTTGCAGAAGGTGTTCAAATGCTAAAGGATGCTGGTGTCGAAGTTGATCCTATGGGGGACCTAGATACTAAAAAAGAGCGGAAGTTGGGCCAAATAGTTTTGGAGAAATATGGCACTGAGTTCTACATACTTCACCGCTATCCGTTGGCTGCGAGGCCTTTCTATACCATGCCTTGCGACGATAATCCTGAATATAGTAATTCGTTTGACGTCTTCATTCGAGGTGAGGAGATCATATCAGGTGCACAACGTATCCATGTACCAGAATTATTGGTTGAACGTGCTGAAGCACGTGGAATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

1369

Amino Acids

152.53

Weight (kDa)

5.22

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	39 - 105	1.4e-11	Importin-beta N-terminal domain
TPR_IPO5	PF25780	126 - 266	2.5e-07	IPO5-like, TPR repeats
HEAT_EZ	PF13513	407 - 461	4.1e-14	HEAT-like repeat
TPR_IMB1	PF25574	481 - 696	3.6e-08	Importin subunit beta-1-like, TPR repeats
tRNA-synt_2	PF00152	1108 - 1367	1.2e-51	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16950 AT2G16950
fragaria_vesca	FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650
malus_domestica	MD05G1125000.v1.1 MD10G1127800.v1.1
prunus_persica	Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1
pyrus_communis	pycom05g11910 pycom10g10950
rosa_chinensis	RchiOBHm_Chr6g0278851
rosa_laevigata	RLG00000013189
rosa_multiflora	Rmu_sc0004380.1_g000009 Rmu_sc0024310.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189590
rosa_rugosa	Rorug06G0119700
rosa_samantha	Rh6AG228200 Rh6BG233800
rosa_wichuraiana	Rw6G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	353, 1349, 2589
AarI	CACCTGC	1 cut(s)	3235
AasI	GACNNNNNNGTC	1 cut(s)	2254
AatII	GACGTC	2 cut(s)	2967, 4014
Acc16I	TGCGCA	2 cut(s)	2461, 3039
Acc36I	ACCTGC	3 cut(s)	2010, 3235, 3496
AccB1I	GGYRCC	4 cut(s)	114, 344, 1546, 1793
AccB7I	CCANNNNNTGG	1 cut(s)	2648
AccBSI	CCGCTC	1 cut(s)	3880
AccI	GTMKAC	3 cut(s)	335, 2948, 2961
AccII	CGCG	7 cut(s)	180, 1042, 2864, 2891, 2912, 3030, 3161
AccIII	TCCGGA	1 cut(s)	2483
AclWI	GGATC	8 cut(s)	257, 270, 319, 669, 1060, 1868, 2076, 3842
AcoI	YGGCCR	5 cut(s)	213, 389, 2811, 3031, 3327
AcsI	RAATTY	8 cut(s)	854, 1099, 1689, 1732, 1907, 2114, 2229, 2657
AcuI	CTGAAG	6 cut(s)	656, 1284, 1869, 2177, 3358, 4107
AcvI	CACGTG	1 cut(s)	4094
AcyI	GRCGYC	2 cut(s)	2964, 4011
AdeI	CACNNNGTG	1 cut(s)	2648
AfaI	GTAC	9 cut(s)	190, 513, 1488, 2882, 3158, 3272, 3744, 3776, 4062
AfiI	CCNNNNNNNGG	6 cut(s)	308, 1012, 2064, 2648, 3336, 3375
AflII	CTTAAG	3 cut(s)	560, 898, 1456
AflIII	ACRYGT	3 cut(s)	801, 2925, 3159
AhdI	GACNNNNNGTC	2 cut(s)	703, 3792
AjiI	CACGTC	1 cut(s)	2926
AjnI	CCWGG	5 cut(s)	514, 760, 1554, 2571, 2838
Alw21I	GWGCWC	5 cut(s)	1922, 2747, 2992, 3258, 4048
Alw26I	GTCTC	7 cut(s)	108, 1457, 1597, 2720, 3629, 3779, 3800
Alw44I	GTGCAC	2 cut(s)	3254, 4044
AlwI	GGATC	8 cut(s)	257, 270, 319, 669, 1060, 1868, 2076, 3842
AlwNI	CAGNNNCTG	3 cut(s)	1124, 1262, 1652
Ama87I	CYCGRG	2 cut(s)	143, 2819
Aor13HI	TCCGGA	1 cut(s)	2483
ApaLI	GTGCAC	2 cut(s)	3254, 4044
ApoI	RAATTY	8 cut(s)	854, 1099, 1689, 1732, 1907, 2114, 2229, 2657
ArsI	GACNNNNNNTTYG	2 cut(s)	3340, 3372
Asp700I	GAANNNNTTC	3 cut(s)	598, 3095, 3813
AspLEI	GCGC	7 cut(s)	182, 1586, 2293, 2462, 2893, 3040, 3236
AspS9I	GGNCC	7 cut(s)	40, 1999, 2193, 2899, 3010, 3859, 3889
AsuC2I	CCSGG	3 cut(s)	217, 3058, 3335
AsuHPI	GGTGA	7 cut(s)	306, 567, 2213, 3163, 3498, 3926, 4037
AsuII	TTCGAA	1 cut(s)	3762
AvaI	CYCGRG	2 cut(s)	143, 2819
AvaII	GGWCC	4 cut(s)	1999, 2899, 3010, 3859
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	3 cut(s)	19, 3258, 4048
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	4 cut(s)	114, 344, 1546, 1793
BanII	GRGCYC	2 cut(s)	2747, 2992
BauI	CACGAG	1 cut(s)	2752
BbrPI	CACGTG	1 cut(s)	4094
BbsI	GAAGAC	1 cut(s)	4006
Bbv12I	GWGCWC	5 cut(s)	1922, 2747, 2992, 3258, 4048
BbvCI	CCTCAGC	3 cut(s)	954, 981, 2729
BceAI	ACGGC	4 cut(s)	63, 3018, 3159, 3342
BcgI	CGANNNNNNTGC	2 cut(s)	2439, 2473
BciT130I	CCWGG	5 cut(s)	516, 762, 1556, 2573, 2840
BciVI	GTATCC	3 cut(s)	3018, 3765, 4064
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	3 cut(s)	217, 3058, 3335
BcoDI	GTCTC	7 cut(s)	108, 1457, 1597, 2720, 3629, 3779, 3800
BfaI	CTAG	4 cut(s)	552, 1250, 1643, 3863
BfmI	CTRYAG	3 cut(s)	336, 2276, 3288
BfoI	RGCGCY	2 cut(s)	2294, 3237
BfrI	CTTAAG	3 cut(s)	560, 898, 1456
BfuAI	ACCTGC	3 cut(s)	2010, 3235, 3496
BfuI	GTATCC	3 cut(s)	3018, 3765, 4064
BglII	AGATCT	2 cut(s)	894, 1744
BlpI	GCTNAGC	2 cut(s)	1504, 2746
BmcAI	AGTACT	2 cut(s)	2882, 3776
Bme1390I	CCNGG	8 cut(s)	217, 516, 762, 1556, 2573, 2840, 3058, 3335
Bme18I	GGWCC	4 cut(s)	1999, 2899, 3010, 3859
BmeRI	GACNNNNNGTC	2 cut(s)	703, 3792
BmeT110I	CYCGRG	2 cut(s)	143, 2819
BmgBI	CACGTC	1 cut(s)	2926
BmgT120I	GGNCC	7 cut(s)	40, 1999, 2193, 2899, 3010, 3859, 3889
BmrFI	CCNGG	8 cut(s)	217, 516, 762, 1556, 2573, 2840, 3058, 3335
BmrI	ACTGGG	1 cut(s)	3496
BmuI	ACTGGG	1 cut(s)	3496
BoxI	GACNNNNGTC	1 cut(s)	2981
BpiI	GAAGAC	1 cut(s)	4006
BplI	GAGNNNNNCTC	4 cut(s)	977, 1009, 2761, 2793
BpmI	CTGGAG	3 cut(s)	86, 1781, 2927
Bpu10I	CCTNAGC	4 cut(s)	954, 981, 2151, 2729
Bpu1102I	GCTNAGC	2 cut(s)	1504, 2746
Bpu14I	TTCGAA	1 cut(s)	3762
BpuMI	CCSGG	3 cut(s)	217, 3058, 3335
BsaAI	YACGTR	3 cut(s)	2420, 3475, 4094
BsaBI	GATNNNNATC	3 cut(s)	666, 1743, 3530
BsaHI	GRCGYC	2 cut(s)	2964, 4011
BsaI	GGTCTC	2 cut(s)	1457, 3629
BsaWI	WCCGGW	2 cut(s)	1876, 2483
BsaXI	ACNNNNNCTCC	8 cut(s)	764, 794, 2891, 2921, 3498, 3528, 3632, 3662
Bsc4I	CCNNNNNNNGG	6 cut(s)	308, 1012, 2064, 2648, 3336, 3375
Bse118I	RCCGGY	1 cut(s)	1819
Bse1I	ACTGG	7 cut(s)	571, 1894, 2526, 2944, 3471, 3502, 3625
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	3 cut(s)	1305, 2400, 2521
Bse8I	GATNNNNATC	3 cut(s)	666, 1743, 3530
BseAI	TCCGGA	1 cut(s)	2483
BseBI	CCWGG	5 cut(s)	516, 762, 1556, 2573, 2840
BseJI	GATNNNNATC	3 cut(s)	666, 1743, 3530
BseLI	CCNNNNNNNGG	6 cut(s)	308, 1012, 2064, 2648, 3336, 3375
BseMI	GCAATG	3 cut(s)	1305, 2400, 2521
BseNI	ACTGG	7 cut(s)	571, 1894, 2526, 2944, 3471, 3502, 3625
BseRI	GAGGAG	5 cut(s)	390, 998, 1541, 2782, 4043
BseSI	GKGCMC	3 cut(s)	19, 3258, 4048
BseX3I	CGGCCG	2 cut(s)	213, 3031
BsgI	GTGCAG	3 cut(s)	750, 1137, 1275
Bsh1236I	CGCG	7 cut(s)	180, 1042, 2864, 2891, 2912, 3030, 3161
Bsh1285I	CGRYCG	4 cut(s)	216, 1881, 2859, 3034
BshNI	GGYRCC	4 cut(s)	114, 344, 1546, 1793
BsiEI	CGRYCG	4 cut(s)	216, 1881, 2859, 3034
BsiHKAI	GWGCWC	5 cut(s)	1922, 2747, 2992, 3258, 4048
BsiHKCI	CYCGRG	2 cut(s)	143, 2819
BslFI	GGGAC	6 cut(s)	952, 983, 1659, 1837, 2252, 3872
BslI	CCNNNNNNNGG	6 cut(s)	308, 1012, 2064, 2648, 3336, 3375
BsmAI	GTCTC	7 cut(s)	108, 1457, 1597, 2720, 3629, 3779, 3800
BsmBI	CGTCTC	2 cut(s)	1597, 3800
BsmFI	GGGAC	6 cut(s)	952, 983, 1659, 1837, 2252, 3872
BsmI	GAATGC	4 cut(s)	561, 580, 2444, 3319
Bso31I	GGTCTC	2 cut(s)	1457, 3629
BsoBI	CYCGRG	2 cut(s)	143, 2819
Bsp119I	TTCGAA	1 cut(s)	3762
Bsp1286I	GDGCHC	6 cut(s)	19, 1922, 2747, 2992, 3258, 4048
Bsp13I	TCCGGA	1 cut(s)	2483
Bsp1720I	GCTNAGC	2 cut(s)	1504, 2746
Bsp19I	CCATGG	2 cut(s)	258, 2393
BspEI	TCCGGA	1 cut(s)	2483
BspFNI	CGCG	7 cut(s)	180, 1042, 2864, 2891, 2912, 3030, 3161
BspMAI	CTGCAG	2 cut(s)	2280, 3292
BspMI	ACCTGC	3 cut(s)	2010, 3235, 3496
BspPI	GGATC	8 cut(s)	257, 270, 319, 669, 1060, 1868, 2076, 3842
BspQI	GCTCTTC	1 cut(s)	2544
BspT104I	TTCGAA	1 cut(s)	3762
BspT107I	GGYRCC	4 cut(s)	114, 344, 1546, 1793
BspTI	CTTAAG	3 cut(s)	560, 898, 1456
BspTNI	GGTCTC	2 cut(s)	1457, 3629
BsrBI	CCGCTC	1 cut(s)	3880
BsrDI	GCAATG	3 cut(s)	1305, 2400, 2521
BsrFI	RCCGGY	1 cut(s)	1819
BsrI	ACTGG	7 cut(s)	571, 1894, 2526, 2944, 3471, 3502, 3625
BssAI	RCCGGY	1 cut(s)	1819
BssNI	GRCGYC	2 cut(s)	2964, 4011
BssSI	CACGAG	1 cut(s)	2752
BssT1I	CCWWGG	4 cut(s)	258, 471, 1866, 2393
Bst2BI	CACGAG	1 cut(s)	2752
Bst2UI	CCWGG	5 cut(s)	516, 762, 1556, 2573, 2840
Bst6I	CTCTTC	2 cut(s)	1518, 2544
BstACI	GRCGYC	2 cut(s)	2964, 4011
BstAFI	CTTAAG	3 cut(s)	560, 898, 1456
BstAPI	GCANNNNNTGC	4 cut(s)	1793, 2183, 2386, 3385
BstBAI	YACGTR	3 cut(s)	2420, 3475, 4094
BstBI	TTCGAA	1 cut(s)	3762
BstC8I	GCNNGC	9 cut(s)	405, 639, 1501, 1785, 2340, 2735, 3069, 3232, 3493
BstDSI	CCRYGG	5 cut(s)	20, 258, 603, 2393, 2862
BstFNI	CGCG	7 cut(s)	180, 1042, 2864, 2891, 2912, 3030, 3161
BstH2I	RGCGCY	2 cut(s)	2294, 3237
BstHHI	GCGC	7 cut(s)	182, 1586, 2293, 2462, 2893, 3040, 3236
BstMAI	GTCTC	7 cut(s)	108, 1457, 1597, 2720, 3629, 3779, 3800
BstMCI	CGRYCG	4 cut(s)	216, 1881, 2859, 3034
BstNI	CCWGG	5 cut(s)	516, 762, 1556, 2573, 2840
BstNSI	RCATGY	1 cut(s)	805
BstPAI	GACNNNNGTC	1 cut(s)	2981
BstSCI	CCNGG	8 cut(s)	215, 514, 760, 1554, 2571, 2838, 3056, 3333
BstSFI	CTRYAG	3 cut(s)	336, 2276, 3288
BstSLI	GKGCMC	3 cut(s)	19, 3258, 4048
BstUI	CGCG	7 cut(s)	180, 1042, 2864, 2891, 2912, 3030, 3161
BstV2I	GAAGAC	1 cut(s)	4006
BstX2I	RGATCY	5 cut(s)	262, 894, 1052, 1744, 2068
BstYI	RGATCY	5 cut(s)	262, 894, 1052, 1744, 2068
BstZI	CGGCCG	2 cut(s)	213, 3031
Bsu36I	CCTNAGG	1 cut(s)	492
BsuI	GTATCC	3 cut(s)	3018, 3765, 4064
BtgI	CCRYGG	5 cut(s)	20, 258, 603, 2393, 2862
BtgZI	GCGATG	1 cut(s)	1023
BtrI	CACGTC	1 cut(s)	2926
BtsI	GCAGTG	2 cut(s)	1120, 1263
BveI	ACCTGC	3 cut(s)	2010, 3235, 3496
Cac8I	GCNNGC	9 cut(s)	405, 639, 1501, 1785, 2340, 2735, 3069, 3232, 3493
CaiI	CAGNNNCTG	3 cut(s)	1124, 1262, 1652
CfoI	GCGC	7 cut(s)	182, 1586, 2293, 2462, 2893, 3040, 3236
Cfr10I	RCCGGY	1 cut(s)	1819
Cfr13I	GGNCC	7 cut(s)	40, 1999, 2193, 2899, 3010, 3859, 3889
Cfr42I	CCGCGG	1 cut(s)	2865
CseI	GACGC	5 cut(s)	642, 707, 2087, 3100, 3150
Csp6I	GTAC	9 cut(s)	189, 512, 1487, 2881, 3157, 3271, 3743, 3775, 4061
CviQI	GTAC	9 cut(s)	189, 512, 1487, 2881, 3157, 3271, 3743, 3775, 4061
DraI	TTTAAA	1 cut(s)	3463
DraIII	CACNNNGTG	1 cut(s)	2648
DrdI	GACNNNNNNGTC	1 cut(s)	2254
DriI	GACNNNNNGTC	2 cut(s)	703, 3792
DseDI	GACNNNNNNGTC	1 cut(s)	2254
EaeI	YGGCCR	5 cut(s)	213, 389, 2811, 3031, 3327
EagI	CGGCCG	2 cut(s)	213, 3031
Eam1104I	CTCTTC	2 cut(s)	1518, 2544
Eam1105I	GACNNNNNGTC	2 cut(s)	703, 3792
EarI	CTCTTC	2 cut(s)	1518, 2544
EciI	GGCGGA	1 cut(s)	2875
Ecl136II	GAGCTC	2 cut(s)	2745, 2990
EclXI	CGGCCG	2 cut(s)	213, 3031
Eco130I	CCWWGG	4 cut(s)	258, 471, 1866, 2393
Eco147I	AGGCCT	1 cut(s)	3958
Eco24I	GRGCYC	2 cut(s)	2747, 2992
Eco31I	GGTCTC	2 cut(s)	1457, 3629
Eco32I	GATATC	2 cut(s)	1018, 1132
Eco47I	GGWCC	4 cut(s)	1999, 2899, 3010, 3859
Eco52I	CGGCCG	2 cut(s)	213, 3031
Eco53kI	GAGCTC	2 cut(s)	2745, 2990
Eco57I	CTGAAG	6 cut(s)	656, 1284, 1869, 2177, 3358, 4107
Eco72I	CACGTG	1 cut(s)	4094
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	143, 2819
EcoICRI	GAGCTC	2 cut(s)	2745, 2990
EcoO109I	RGGNCCY	3 cut(s)	40, 1999, 3859
EcoRI	GAATTC	1 cut(s)	854
EcoRII	CCWGG	5 cut(s)	514, 760, 1554, 2571, 2838
EcoRV	GATATC	2 cut(s)	1018, 1132
EcoT14I	CCWWGG	4 cut(s)	258, 471, 1866, 2393
EcoT22I	ATGCAT	3 cut(s)	250, 466, 2446
EcoT38I	GRGCYC	2 cut(s)	2747, 2992
ErhI	CCWWGG	4 cut(s)	258, 471, 1866, 2393
Esp3I	CGTCTC	2 cut(s)	1597, 3800
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	6 cut(s)	952, 983, 1659, 1837, 2252, 3872
FauI	CCCGC	1 cut(s)	1476
FauNDI	CATATG	2 cut(s)	2344, 2373
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	3 cut(s)	335, 2948, 2961
FriOI	GRGCYC	2 cut(s)	2747, 2992
FspAI	RTGCGCAY	1 cut(s)	2461
FspBI	CTAG	4 cut(s)	552, 1250, 1643, 3863
FspI	TGCGCA	2 cut(s)	2461, 3039
GlaI	GCGC	7 cut(s)	181, 1585, 2292, 2461, 2892, 3039, 3235
GsuI	CTGGAG	3 cut(s)	86, 1781, 2927
HaeII	RGCGCY	2 cut(s)	2294, 3237
HgaI	GACGC	5 cut(s)	642, 707, 2087, 3100, 3150
HhaI	GCGC	7 cut(s)	182, 1586, 2293, 2462, 2893, 3040, 3236
Hin1I	GRCGYC	2 cut(s)	2964, 4011
Hin6I	GCGC	7 cut(s)	180, 1584, 2291, 2460, 2891, 3038, 3234
HinP1I	GCGC	7 cut(s)	180, 1584, 2291, 2460, 2891, 3038, 3234
HincII	GTYRAC	5 cut(s)	814, 1140, 2949, 2962, 3679
HindII	GTYRAC	5 cut(s)	814, 1140, 2949, 2962, 3679
HindIII	AAGCTT	2 cut(s)	563, 596
HpaI	GTTAAC	1 cut(s)	3679
HphI	GGTGA	7 cut(s)	306, 567, 2213, 3163, 3498, 3926, 4037
Hpy99I	CGWCG	7 cut(s)	2835, 2927, 2953, 2966, 3116, 3166, 3983
Hsp92I	GRCGYC	2 cut(s)	2964, 4011
HspAI	GCGC	7 cut(s)	180, 1584, 2291, 2460, 2891, 3038, 3234
Kpn2I	TCCGGA	1 cut(s)	2483
Ksp22I	TGATCA	1 cut(s)	1009
KspAI	GTTAAC	1 cut(s)	3679
KspI	CCGCGG	1 cut(s)	2865
LguI	GCTCTTC	1 cut(s)	2544
MaeI	CTAG	4 cut(s)	552, 1250, 1643, 3863
MaeIII	GTNAC	8 cut(s)	412, 573, 882, 2301, 2577, 2928, 3115, 3504
MbiI	CCGCTC	1 cut(s)	3880
MfeI	CAATTG	2 cut(s)	2238, 3225
MflI	RGATCY	5 cut(s)	262, 894, 1052, 1744, 2068
MhlI	GDGCHC	6 cut(s)	19, 1922, 2747, 2992, 3258, 4048
MluI	ACGCGT	1 cut(s)	3159
MlyI	GAGTC	6 cut(s)	974, 1899, 2779, 3188, 3364, 3781
MmeI	TCCRAC	7 cut(s)	270, 1224, 1346, 1387, 2065, 2965, 3343
Mph1103I	ATGCAT	3 cut(s)	250, 466, 2446
MroI	TCCGGA	1 cut(s)	2483
MroXI	GAANNNNTTC	3 cut(s)	598, 3095, 3813
MseI	TTAA	8 cut(s)	561, 791, 899, 1457, 2492, 3462, 3678, 3770
MslI	CAYNNNNRTG	3 cut(s)	1296, 2507, 3609
MspA1I	CMGCKG	6 cut(s)	95, 641, 745, 1121, 2678, 2864
MspCI	CTTAAG	3 cut(s)	560, 898, 1456
MspR9I	CCNGG	8 cut(s)	217, 516, 762, 1556, 2573, 2840, 3058, 3335
MssI	GTTTAAAC	1 cut(s)	3463
MunI	CAATTG	2 cut(s)	2238, 3225
Mva1269I	GAATGC	4 cut(s)	561, 580, 2444, 3319
MvaI	CCWGG	5 cut(s)	516, 762, 1556, 2573, 2840
MvnI	CGCG	7 cut(s)	180, 1042, 2864, 2891, 2912, 3030, 3161
NciI	CCSGG	3 cut(s)	217, 3058, 3335
NcoI	CCATGG	2 cut(s)	258, 2393
NdeI	CATATG	2 cut(s)	2344, 2373
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	5 cut(s)	573, 2301, 2928, 3115, 3504
NsbI	TGCGCA	2 cut(s)	2461, 3039
NsiI	ATGCAT	3 cut(s)	250, 466, 2446
NspI	RCATGY	1 cut(s)	805
NspV	TTCGAA	1 cut(s)	3762
PaeR7I	CTCGAG	1 cut(s)	2819
PaqCI	CACCTGC	1 cut(s)	3235
PceI	AGGCCT	1 cut(s)	3958
PciI	ACATGT	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	2544
PctI	GAATGC	4 cut(s)	561, 580, 2444, 3319
PdmI	GAANNNNTTC	3 cut(s)	598, 3095, 3813
PfeI	GAWTC	7 cut(s)	202, 503, 1159, 1669, 1800, 2849, 3348
PflMI	CCANNNNNTGG	1 cut(s)	2648
PleI	GAGTC	6 cut(s)	973, 1898, 2778, 3187, 3363, 3781
PmaCI	CACGTG	1 cut(s)	4094
PmeI	GTTTAAAC	1 cut(s)	3463
PmlI	CACGTG	1 cut(s)	4094
PpsI	GAGTC	6 cut(s)	973, 1898, 2778, 3187, 3363, 3781
Ppu21I	YACGTR	3 cut(s)	2420, 3475, 4094
PpuMI	RGGWCCY	2 cut(s)	1999, 3859
PscI	ACATGT	1 cut(s)	801
PshAI	GACNNNNGTC	1 cut(s)	2981
PsiI	TTATAA	3 cut(s)	353, 1349, 2589
Psp124BI	GAGCTC	2 cut(s)	2747, 2992
Psp5II	RGGWCCY	2 cut(s)	1999, 3859
Psp6I	CCWGG	5 cut(s)	514, 760, 1554, 2571, 2838
PspCI	CACGTG	1 cut(s)	4094
PspGI	CCWGG	5 cut(s)	514, 760, 1554, 2571, 2838
PspPI	GGNCC	7 cut(s)	40, 1999, 2193, 2899, 3010, 3859, 3889
PspPPI	RGGWCCY	2 cut(s)	1999, 3859
PsrI	GAACNNNNNNTAC	2 cut(s)	2073, 2105
PstI	CTGCAG	2 cut(s)	2280, 3292
PstNI	CAGNNNCTG	3 cut(s)	1124, 1262, 1652
PsuI	RGATCY	5 cut(s)	262, 894, 1052, 1744, 2068
PvuII	CAGCTG	2 cut(s)	745, 2678
RsaI	GTAC	9 cut(s)	190, 513, 1488, 2882, 3158, 3272, 3744, 3776, 4062
RsaNI	GTAC	9 cut(s)	189, 512, 1487, 2881, 3157, 3271, 3743, 3775, 4061
RseI	CAYNNNNRTG	3 cut(s)	1296, 2507, 3609
SacI	GAGCTC	2 cut(s)	2747, 2992
SacII	CCGCGG	1 cut(s)	2865
SalI	GTCGAC	2 cut(s)	2947, 2960
SapI	GCTCTTC	1 cut(s)	2544
SaqAI	TTAA	8 cut(s)	561, 791, 899, 1457, 2492, 3462, 3678, 3770
Sau96I	GGNCC	7 cut(s)	40, 1999, 2193, 2899, 3010, 3859, 3889
ScaI	AGTACT	2 cut(s)	2882, 3776
SchI	GAGTC	6 cut(s)	974, 1899, 2779, 3188, 3364, 3781
ScrFI	CCNGG	8 cut(s)	217, 516, 762, 1556, 2573, 2840, 3058, 3335
SduI	GDGCHC	6 cut(s)	19, 1922, 2747, 2992, 3258, 4048
SfcI	CTRYAG	3 cut(s)	336, 2276, 3288
Sfr274I	CTCGAG	1 cut(s)	2819
Sfr303I	CCGCGG	1 cut(s)	2865
SfuI	TTCGAA	1 cut(s)	3762
SgrBI	CCGCGG	1 cut(s)	2865
SinI	GGWCC	4 cut(s)	1999, 2899, 3010, 3859
SlaI	CTCGAG	1 cut(s)	2819
SmiMI	CAYNNNNRTG	3 cut(s)	1296, 2507, 3609
SmlI	CTYRAG	4 cut(s)	560, 898, 1456, 2819
SmoI	CTYRAG	4 cut(s)	560, 898, 1456, 2819
SseBI	AGGCCT	1 cut(s)	3958
SspI	AATATT	1 cut(s)	1467
SspMI	CTAG	4 cut(s)	552, 1250, 1643, 3863
SstI	GAGCTC	2 cut(s)	2747, 2992
StuI	AGGCCT	1 cut(s)	3958
StyD4I	CCNGG	8 cut(s)	215, 514, 760, 1554, 2571, 2838, 3056, 3333
StyI	CCWWGG	4 cut(s)	258, 471, 1866, 2393
TatI	WGTACW	3 cut(s)	2880, 3270, 3774
TfiI	GAWTC	7 cut(s)	202, 503, 1159, 1669, 1800, 2849, 3348
Tru1I	TTAA	8 cut(s)	561, 791, 899, 1457, 2492, 3462, 3678, 3770
Tru9I	TTAA	8 cut(s)	561, 791, 899, 1457, 2492, 3462, 3678, 3770
TseFI	GTSAC	5 cut(s)	573, 2301, 2928, 3115, 3504
Tsp45I	GTSAC	5 cut(s)	573, 2301, 2928, 3115, 3504
TspGWI	ACGGA	7 cut(s)	592, 1120, 1621, 1743, 2819, 2993, 3933
Van91I	CCANNNNNTGG	1 cut(s)	2648
Vha464I	CTTAAG	3 cut(s)	560, 898, 1456
VneI	GTGCAC	2 cut(s)	3254, 4044
VpaK11BI	GGWCC	4 cut(s)	1999, 2899, 3010, 3859
XapI	RAATTY	8 cut(s)	854, 1099, 1689, 1732, 1907, 2114, 2229, 2657
XceI	RCATGY	1 cut(s)	805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3359
XhoI	CTCGAG	1 cut(s)	2819
XmiI	GTMKAC	3 cut(s)	335, 2948, 2961
XmnI	GAANNNNTTC	3 cut(s)	598, 3095, 3813
XspI	CTAG	4 cut(s)	552, 1250, 1643, 3863
ZraI	GACGTC	2 cut(s)	2965, 4012
ZrmI	AGTACT	2 cut(s)	2882, 3776
Zsp2I	ATGCAT	3 cut(s)	250, 466, 2446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.