Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007704

Physical Location & Seq

Genomic Coordinates Forward (+)

43960992 .. 43974429

Gene Structure 13438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGGCGGCGGCGAGTGCCCCGTGGCAGCCACAGAAGGAGGGCCTCACGGCGATCTGTGGGCTGCTGGAGCAGCAGATTTCGCCGACTTCCTCCGCTGACAAGTCTCAGATTTGGCACCAACTCCAAGCCTACTCTCAGAACCCCGAGTTCCATAATTACCTTGTTTTCATTCTCACACGCGCCGAGGGTACATCAGTGGAGATTCGACAAGCGGCGGGGTTGCTTTTGAAAAACAACCTTAGAAATGCATACAGCTCCATGGATCCTGCATACCAGCAGTATATCAAGTCGGAATTATTGCCTTGCTTGGGATCACCAGATAGGCACATCAGGTCTACAGTAGGCACCATTATAAGTGTTGTTGTTCAACTTGGAGGAGTTATGGGATGGCCGGAATTACTGCAAGCTCTTGTAACTTGTTTGGACAGTAATGACGTAAATCACATGGAAGGTGCTATGGATGCATTATCCAAGGTTTGTGAGGATATACCTCAGGTGCTTGATTCAGATGTACCCGGGTTGCCTGAACGCCCCATCAACATATTCCTTCCTAGAATGCTTAAGCTTTTCCAGTCACCACATTCATCCCTCAGAAAGCTTTCCCTGGGTTCTGTAAATCAATACATTATGTTGATGCCAGCAGCTTTATATGCGTCTATGGATCAATATCTTCAGGGGTTGTTTGTCCTTGCTAATGACCCTTCTTCAGAAGTGAGGAAATTGGTATGTGCAGCATTTGTTCAGCTGATTGAAGTTCGTCCAGGGTTCTTGGAGCCACAGTTGAGGAACTTAATTGAATACATGTTGCAAGTCAACAAGGACACCGATGAAGAAGTTGCCCTTGAAGCCTGTGAATTCTGGTCTGCATATTGTGAGGCTGAGTTACCACCTGAGATCTTAAGAGAGTTTTTACCCCGTCTAATTCCGATTTTGCTGTCAAACATGGCTTACGCTGAGGATGATGAGTCCCTTGTTGATGCTGAGGAGGATGGCTCTGTCCCAGACCGTGATCAGGATATCAAACCTCGTTTTCATTCATCGCGGTTTCATGGATCTGATGGTGCGGAAGAAGATGATGATGATATTGTCAATGTTTGGAATTTACGGAAATGCAGTGCAGCGGCCGTTGATATCCTGTCAACTGTGTTTGGGGATGAGATTCTCCCAACACTGATGGCCTTTGTTCAGGCCAAGTTGTCCAACAGTGATGATGAAACATGGAAAGAAAGGGAAGCTGCTGTTTTGGCTCTAGGTGCGGTAGCTGAAGGTTGCATTATTGGTCTTTATCCTCATTTGAATGAGATCATTGCATATCTTATTCCTCTCTTAGACGATAAGTTTCCACTTATAAGGAGTATATCCTGTTGGACACTTTCACGTTTCAGCAAGTTCATTGTTGAGGGTGTTGGACATCAACAAGGTTATGAGCAGTTTGACAAGGTTCTTCTGGGTCTCTTAAGAAGAATATTAGATAATAACAAGCGGGTACAGGAGGCTGCTTGCTCAGCTTTTGCGACACTTGAAGAGGAGGCGGCTGATGCGTTGGCACCACGCCTGGAAACTATTTTACAACACCTTATGTGCGCTTTTGGGAAATATCAGAGACGGAACCTTAGAATTGTATATGATGCCATTGGAACTCTAGCAGATGCTGTCGGTGGGGAGTTGAATCGTCCCAATTATCTTGAAATTCTCATGCCACCATTAATTGCAAAGTGGCAACAACTTGCAAATTCAGATAAAGATCTGTTTCCATTGCTGGAGTGCTTTACTTCTATTTCGCAGGCTTTGGGTGCCGGATTCTCTCCATTTGCAGAGCCAGTGTTTCAGAGGTGCATAAGCATCATACAGTCCCAACAAGTTGCCAAGGTTGATCCGGTCGCTTCAGGAGTCCAGTATGATAAAGAATTTATTGTGTGCTCTCTTGACTTGCTTTCTGGACTTACAGAAGGTCTTGGTAGTGGGATAGAAAGTTTGGTTTCACAAAGCAATTTGAAGGACCTGCTTTTGCACTGTTGCATGGATGATGCTTCGGATGTCCGACAGAGTGGCTTTGCCTTACTTGGGGATCTTGCAAGAGTATGCCCTGTTCATTTGCGTCCTCGTTTGCCGGAATTTCTTGATGTTGCAGCCAAACAACTGAATACTCCTAAGCTGAAGGAAACTGTTTCAGTGGCAAATAATGCGTGTTGGGCCATTGGTGAGTTAGCAGTCAAGGTTCATCAAGAAATTTCTCCAATTGTTTTGACGGTCATGTCTTGCTTAGTCCCCATACTGCAGCATCCAGAGGCGCTCAACAAGTCACTGATTGAGAACAGTGCTATCACGCTTGGGAGGCTTGCATATGTTTGTCCAGAGCTTGTGGCTCCGCATATGGAGCATTTCATGCAGCCATGGTGCATTGCTTTGTCAATGATACGTGATGATATAGAAAAGGAGGATGCATTCCGAGGTCTATGCGCATTGGTTAGAACAAATCCATCCGGAGCATTGAGTTCACTCATATATATGTGCAATGCTATTGCCAGTTGGCATGAAATAAGGAGTGAAGAGCTACATAATGCAGTTTGCCAGGTGTTGCACGGTTATAAGCAGATGCTTGTGAATGGAGCGTGGGAACAGTGTATGTCTGCTTTGGATCCACAAGTCAAGAACAAGCTATCAAAATACCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

892

Amino Acids

98.94

Weight (kDa)

4.86

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	39 - 105	1.1e-11	Importin-beta N-terminal domain
TPR_IPO5	PF25780	125 - 266	1.3e-06	IPO5-like, TPR repeats
HEAT_EZ	PF13513	407 - 461	2.4e-14	HEAT-like repeat
TPR_IMB1	PF25574	481 - 696	1.7e-08	Importin subunit beta-1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16950 AT2G16950
fragaria_vesca	FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650
malus_domestica	MD05G1125000.v1.1 MD10G1127800.v1.1
prunus_persica	Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1
pyrus_communis	pycom05g11910 pycom10g10950
rosa_chinensis	RchiOBHm_Chr6g0278851
rosa_laevigata	RLG00000013189
rosa_multiflora	Rmu_sc0004380.1_g000009 Rmu_sc0024310.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189590
rosa_rugosa	Rorug06G0119700
rosa_samantha	Rh6AG228200 Rh6BG233800
rosa_wichuraiana	Rw6G020020

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	353, 1349, 2589
AasI	GACNNNNNNGTC	1 cut(s)	2254
Acc16I	TGCGCA	1 cut(s)	2461
Acc36I	ACCTGC	1 cut(s)	2010
AccB1I	GGYRCC	4 cut(s)	114, 344, 1546, 1793
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	2 cut(s)	180, 1042
AccIII	TCCGGA	1 cut(s)	2483
AclWI	GGATC	9 cut(s)	257, 270, 319, 669, 1060, 1868, 2076, 2633, 2646
AcoI	YGGCCR	2 cut(s)	389, 1122
AcsI	RAATTY	7 cut(s)	854, 1099, 1689, 1732, 1907, 2114, 2229
AcuI	CTGAAG	5 cut(s)	656, 690, 1284, 1869, 2177
AfaI	GTAC	3 cut(s)	190, 513, 1488
AfiI	CCNNNNNNNGG	3 cut(s)	308, 1012, 2064
AflII	CTTAAG	3 cut(s)	560, 898, 1456
AflIII	ACRYGT	1 cut(s)	801
AjnI	CCWGG	4 cut(s)	603, 760, 1554, 2571
Alw21I	GWGCWC	1 cut(s)	1922
Alw26I	GTCTC	3 cut(s)	108, 1457, 1597
AlwI	GGATC	9 cut(s)	257, 270, 319, 669, 1060, 1868, 2076, 2633, 2646
AlwNI	CAGNNNCTG	1 cut(s)	1652
Ama87I	CYCGRG	2 cut(s)	143, 515
Aor13HI	TCCGGA	1 cut(s)	2483
AoxI	GGCC	6 cut(s)	40, 389, 1122, 1176, 1188, 2193
ApoI	RAATTY	7 cut(s)	854, 1099, 1689, 1732, 1907, 2114, 2229
AseI	ATTAAT	1 cut(s)	1706
Asp700I	GAANNNNTTC	1 cut(s)	598
AspLEI	GCGC	4 cut(s)	182, 1586, 2293, 2462
AspS9I	GGNCC	3 cut(s)	40, 1999, 2193
AsuC2I	CCSGG	2 cut(s)	516, 517
AsuHPI	GGTGA	3 cut(s)	306, 567, 2213
AvaI	CYCGRG	2 cut(s)	143, 515
AvaII	GGWCC	1 cut(s)	1999
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	19
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BamHI	GGATCC	2 cut(s)	262, 2638
BanI	GGYRCC	4 cut(s)	114, 344, 1546, 1793
Bbv12I	GWGCWC	1 cut(s)	1922
BbvCI	CCTCAGC	2 cut(s)	954, 981
BccI	CCATC	6 cut(s)	381, 542, 983, 1052, 1168, 2488
BceAI	ACGGC	2 cut(s)	63, 1109
BcgI	CGANNNNNNTGC	2 cut(s)	2439, 2473
BciT130I	CCWGG	4 cut(s)	605, 762, 1556, 2573
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	2 cut(s)	516, 517
BcoDI	GTCTC	3 cut(s)	108, 1457, 1597
BfaI	CTAG	3 cut(s)	552, 1250, 1643
BfmI	CTRYAG	2 cut(s)	336, 2276
BfoI	RGCGCY	1 cut(s)	2294
BfrI	CTTAAG	3 cut(s)	560, 898, 1456
BfuAI	ACCTGC	1 cut(s)	2010
BglII	AGATCT	2 cut(s)	894, 1744
BlpI	GCTNAGC	1 cut(s)	1504
Bme1390I	CCNGG	6 cut(s)	516, 517, 605, 762, 1556, 2573
Bme18I	GGWCC	1 cut(s)	1999
BmeT110I	CYCGRG	2 cut(s)	143, 515
BmgT120I	GGNCC	3 cut(s)	40, 1999, 2193
BmiI	GGNNCC	9 cut(s)	116, 264, 346, 774, 1548, 1610, 1795, 2367, 2640
BmrFI	CCNGG	6 cut(s)	516, 517, 605, 762, 1556, 2573
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	2 cut(s)	86, 1781
Bpu10I	CCTNAGC	3 cut(s)	954, 981, 2151
Bpu1102I	GCTNAGC	1 cut(s)	1504
BpuMI	CCSGG	2 cut(s)	516, 517
BsaAI	YACGTR	1 cut(s)	2420
BsaBI	GATNNNNATC	2 cut(s)	666, 1743
BsaI	GGTCTC	1 cut(s)	1457
BsaWI	WCCGGW	2 cut(s)	1876, 2483
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 1012, 2064
Bse1I	ACTGG	4 cut(s)	571, 1820, 1894, 2526
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	4 cut(s)	1305, 1754, 2400, 2521
Bse8I	GATNNNNATC	2 cut(s)	666, 1743
BseAI	TCCGGA	1 cut(s)	2483
BseBI	CCWGG	4 cut(s)	605, 762, 1556, 2573
BseJI	GATNNNNATC	2 cut(s)	666, 1743
BseLI	CCNNNNNNNGG	3 cut(s)	308, 1012, 2064
BseMI	GCAATG	4 cut(s)	1305, 1754, 2400, 2521
BseMII	CTCAG	9 cut(s)	119, 149, 506, 604, 870, 882, 945, 972, 1518
BseNI	ACTGG	4 cut(s)	571, 1820, 1894, 2526
BseRI	GAGGAG	3 cut(s)	390, 998, 1541
BseSI	GKGCMC	1 cut(s)	19
BseX3I	CGGCCG	1 cut(s)	1122
BsgI	GTGCAG	2 cut(s)	750, 1137
Bsh1236I	CGCG	2 cut(s)	180, 1042
Bsh1285I	CGRYCG	2 cut(s)	1125, 1881
BshFI	GGCC	6 cut(s)	42, 391, 1124, 1178, 1190, 2195
BshNI	GGYRCC	4 cut(s)	114, 344, 1546, 1793
BsiEI	CGRYCG	2 cut(s)	1125, 1881
BsiHKAI	GWGCWC	1 cut(s)	1922
BsiHKCI	CYCGRG	2 cut(s)	143, 515
BsiSI	CCGG	6 cut(s)	392, 516, 1797, 1877, 2111, 2484
BslFI	GGGAC	5 cut(s)	952, 983, 1659, 1837, 2252
BslI	CCNNNNNNNGG	3 cut(s)	308, 1012, 2064
BsmAI	GTCTC	3 cut(s)	108, 1457, 1597
BsmBI	CGTCTC	1 cut(s)	1597
BsmFI	GGGAC	5 cut(s)	952, 983, 1659, 1837, 2252
BsmI	GAATGC	2 cut(s)	561, 2444
BsnI	GGCC	6 cut(s)	42, 391, 1124, 1178, 1190, 2195
Bso31I	GGTCTC	1 cut(s)	1457
BsoBI	CYCGRG	2 cut(s)	143, 515
Bsp1286I	GDGCHC	2 cut(s)	19, 1922
Bsp13I	TCCGGA	1 cut(s)	2483
Bsp1720I	GCTNAGC	1 cut(s)	1504
Bsp19I	CCATGG	2 cut(s)	258, 2393
BspANI	GGCC	6 cut(s)	42, 391, 1124, 1178, 1190, 2195
BspCNI	CTCAG	9 cut(s)	118, 148, 505, 603, 871, 883, 946, 973, 1517
BspEI	TCCGGA	1 cut(s)	2483
BspFNI	CGCG	2 cut(s)	180, 1042
BspLI	GGNNCC	9 cut(s)	116, 264, 346, 774, 1548, 1610, 1795, 2367, 2640
BspMAI	CTGCAG	1 cut(s)	2280
BspMI	ACCTGC	1 cut(s)	2010
BspPI	GGATC	9 cut(s)	257, 270, 319, 669, 1060, 1868, 2076, 2633, 2646
BspQI	GCTCTTC	1 cut(s)	2544
BspT107I	GGYRCC	4 cut(s)	114, 344, 1546, 1793
BspTI	CTTAAG	3 cut(s)	560, 898, 1456
BspTNI	GGTCTC	1 cut(s)	1457
BsrDI	GCAATG	4 cut(s)	1305, 1754, 2400, 2521
BsrI	ACTGG	4 cut(s)	571, 1820, 1894, 2526
BssT1I	CCWWGG	4 cut(s)	258, 471, 1866, 2393
Bst2UI	CCWGG	4 cut(s)	605, 762, 1556, 2573
Bst6I	CTCTTC	2 cut(s)	1518, 2544
BstAFI	CTTAAG	3 cut(s)	560, 898, 1456
BstAPI	GCANNNNNTGC	2 cut(s)	2183, 2386
BstBAI	YACGTR	1 cut(s)	2420
BstC8I	GCNNGC	5 cut(s)	405, 639, 1501, 1785, 2340
BstDSI	CCRYGG	3 cut(s)	20, 258, 2393
BstFNI	CGCG	2 cut(s)	180, 1042
BstH2I	RGCGCY	1 cut(s)	2294
BstHHI	GCGC	4 cut(s)	182, 1586, 2293, 2462
BstMAI	GTCTC	3 cut(s)	108, 1457, 1597
BstMCI	CGRYCG	2 cut(s)	1125, 1881
BstNI	CCWGG	4 cut(s)	605, 762, 1556, 2573
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	6 cut(s)	514, 515, 603, 760, 1554, 2571
BstSFI	CTRYAG	2 cut(s)	336, 2276
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	2 cut(s)	180, 1042
BstX2I	RGATCY	6 cut(s)	262, 894, 1052, 1744, 2068, 2638
BstYI	RGATCY	6 cut(s)	262, 894, 1052, 1744, 2068, 2638
BstZI	CGGCCG	1 cut(s)	1122
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	6 cut(s)	42, 391, 1124, 1178, 1190, 2195
BtgI	CCRYGG	3 cut(s)	20, 258, 2393
BtgZI	GCGATG	1 cut(s)	1023
BtsI	GCAGTG	1 cut(s)	1120
BveI	ACCTGC	1 cut(s)	2010
Cac8I	GCNNGC	5 cut(s)	405, 639, 1501, 1785, 2340
CaiI	CAGNNNCTG	1 cut(s)	1652
CfoI	GCGC	4 cut(s)	182, 1586, 2293, 2462
Cfr13I	GGNCC	3 cut(s)	40, 1999, 2193
Cfr9I	CCCGGG	1 cut(s)	515
CseI	GACGC	2 cut(s)	642, 2087
Csp6I	GTAC	3 cut(s)	189, 512, 1487
CviQI	GTAC	3 cut(s)	189, 512, 1487
DrdI	GACNNNNNNGTC	1 cut(s)	2254
DseDI	GACNNNNNNGTC	1 cut(s)	2254
EaeI	YGGCCR	2 cut(s)	389, 1122
EagI	CGGCCG	1 cut(s)	1122
Eam1104I	CTCTTC	2 cut(s)	1518, 2544
EarI	CTCTTC	2 cut(s)	1518, 2544
EclXI	CGGCCG	1 cut(s)	1122
Eco130I	CCWWGG	4 cut(s)	258, 471, 1866, 2393
Eco31I	GGTCTC	1 cut(s)	1457
Eco32I	GATATC	2 cut(s)	1018, 1132
Eco47I	GGWCC	1 cut(s)	1999
Eco52I	CGGCCG	1 cut(s)	1122
Eco57I	CTGAAG	5 cut(s)	656, 690, 1284, 1869, 2177
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	143, 515
EcoO109I	RGGNCCY	2 cut(s)	40, 1999
EcoRI	GAATTC	1 cut(s)	854
EcoRII	CCWGG	4 cut(s)	603, 760, 1554, 2571
EcoRV	GATATC	2 cut(s)	1018, 1132
EcoT14I	CCWWGG	4 cut(s)	258, 471, 1866, 2393
EcoT22I	ATGCAT	3 cut(s)	250, 466, 2446
ErhI	CCWWGG	4 cut(s)	258, 471, 1866, 2393
Esp3I	CGTCTC	1 cut(s)	1597
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	5 cut(s)	952, 983, 1659, 1837, 2252
FauI	CCCGC	2 cut(s)	208, 1476
FauNDI	CATATG	2 cut(s)	2344, 2373
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	335
FspAI	RTGCGCAY	1 cut(s)	2461
FspBI	CTAG	3 cut(s)	552, 1250, 1643
FspI	TGCGCA	1 cut(s)	2461
GlaI	GCGC	4 cut(s)	181, 1585, 2292, 2461
GsuI	CTGGAG	2 cut(s)	86, 1781
HaeII	RGCGCY	1 cut(s)	2294
HaeIII	GGCC	6 cut(s)	42, 391, 1124, 1178, 1190, 2195
HapII	CCGG	6 cut(s)	392, 516, 1797, 1877, 2111, 2484
HgaI	GACGC	2 cut(s)	642, 2087
HhaI	GCGC	4 cut(s)	182, 1586, 2293, 2462
Hin6I	GCGC	4 cut(s)	180, 1584, 2291, 2460
HinP1I	GCGC	4 cut(s)	180, 1584, 2291, 2460
HincII	GTYRAC	2 cut(s)	814, 1140
HindII	GTYRAC	2 cut(s)	814, 1140
HindIII	AAGCTT	2 cut(s)	563, 596
HinfI	GANTC	7 cut(s)	202, 503, 965, 1159, 1669, 1800, 1890
HpaII	CCGG	6 cut(s)	392, 516, 1797, 1877, 2111, 2484
HphI	GGTGA	3 cut(s)	306, 567, 2213
Hpy166II	GTNNAC	4 cut(s)	336, 814, 1140, 2498
Hpy8I	GTNNAC	4 cut(s)	336, 814, 1140, 2498
HpyAV	CCTTC	8 cut(s)	28, 443, 557, 711, 1259, 1943, 1990, 2152
HpyCH4IV	ACGT	3 cut(s)	435, 1378, 2419
HpySE526I	ACGT	3 cut(s)	435, 1378, 2419
HspAI	GCGC	4 cut(s)	180, 1584, 2291, 2460
Kpn2I	TCCGGA	1 cut(s)	2483
Ksp22I	TGATCA	1 cut(s)	1009
LguI	GCTCTTC	1 cut(s)	2544
LmnI	GCTCC	7 cut(s)	67, 260, 772, 2371, 2377, 2486, 2609
MaeI	CTAG	3 cut(s)	552, 1250, 1643
MaeII	ACGT	3 cut(s)	435, 1378, 2419
MaeIII	GTNAC	4 cut(s)	412, 573, 882, 2301
MboII	GAAGA	9 cut(s)	662, 696, 842, 1079, 1082, 1436, 1473, 1535, 2561
MfeI	CAATTG	1 cut(s)	2238
MflI	RGATCY	6 cut(s)	262, 894, 1052, 1744, 2068, 2638
MhlI	GDGCHC	2 cut(s)	19, 1922
MlyI	GAGTC	2 cut(s)	974, 1899
MmeI	TCCRAC	5 cut(s)	270, 1224, 1346, 1387, 2065
Mph1103I	ATGCAT	3 cut(s)	250, 466, 2446
MroI	TCCGGA	1 cut(s)	2483
MroXI	GAANNNNTTC	1 cut(s)	598
MseI	TTAA	5 cut(s)	561, 791, 899, 1457, 1706
MslI	CAYNNNNRTG	2 cut(s)	1296, 2507
MspA1I	CMGCKG	3 cut(s)	95, 745, 1121
MspCI	CTTAAG	3 cut(s)	560, 898, 1456
MspI	CCGG	6 cut(s)	392, 516, 1797, 1877, 2111, 2484
MspR9I	CCNGG	6 cut(s)	516, 517, 605, 762, 1556, 2573
MunI	CAATTG	1 cut(s)	2238
Mva1269I	GAATGC	2 cut(s)	561, 2444
MvaI	CCWGG	4 cut(s)	605, 762, 1556, 2573
MvnI	CGCG	2 cut(s)	180, 1042
NciI	CCSGG	2 cut(s)	516, 517
NcoI	CCATGG	2 cut(s)	258, 2393
NdeI	CATATG	2 cut(s)	2344, 2373
NlaIV	GGNNCC	9 cut(s)	116, 264, 346, 774, 1548, 1610, 1795, 2367, 2640
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	2 cut(s)	573, 2301
NsbI	TGCGCA	1 cut(s)	2461
NsiI	ATGCAT	3 cut(s)	250, 466, 2446
NspI	RCATGY	1 cut(s)	805
PasI	CCCWGGG	1 cut(s)	604
PciI	ACATGT	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	2544
PctI	GAATGC	2 cut(s)	561, 2444
PdmI	GAANNNNTTC	1 cut(s)	598
PfeI	GAWTC	5 cut(s)	202, 503, 1159, 1669, 1800
PleI	GAGTC	2 cut(s)	973, 1898
PpsI	GAGTC	2 cut(s)	973, 1898
Ppu21I	YACGTR	1 cut(s)	2420
PpuMI	RGGWCCY	1 cut(s)	1999
PscI	ACATGT	1 cut(s)	801
PshBI	ATTAAT	1 cut(s)	1706
PsiI	TTATAA	3 cut(s)	353, 1349, 2589
Psp5II	RGGWCCY	1 cut(s)	1999
Psp6I	CCWGG	4 cut(s)	603, 760, 1554, 2571
PspGI	CCWGG	4 cut(s)	603, 760, 1554, 2571
PspN4I	GGNNCC	9 cut(s)	116, 264, 346, 774, 1548, 1610, 1795, 2367, 2640
PspPI	GGNCC	3 cut(s)	40, 1999, 2193
PspPPI	RGGWCCY	1 cut(s)	1999
PsrI	GAACNNNNNNTAC	2 cut(s)	2073, 2105
PstI	CTGCAG	1 cut(s)	2280
PstNI	CAGNNNCTG	1 cut(s)	1652
PsuI	RGATCY	6 cut(s)	262, 894, 1052, 1744, 2068, 2638
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	3 cut(s)	190, 513, 1488
RsaNI	GTAC	3 cut(s)	189, 512, 1487
RseI	CAYNNNNRTG	2 cut(s)	1296, 2507
SapI	GCTCTTC	1 cut(s)	2544
SaqAI	TTAA	5 cut(s)	561, 791, 899, 1457, 1706
Sau96I	GGNCC	3 cut(s)	40, 1999, 2193
SchI	GAGTC	2 cut(s)	974, 1899
ScrFI	CCNGG	6 cut(s)	516, 517, 605, 762, 1556, 2573
SduI	GDGCHC	2 cut(s)	19, 1922
SfcI	CTRYAG	2 cut(s)	336, 2276
SinI	GGWCC	1 cut(s)	1999
SmaI	CCCGGG	1 cut(s)	517
SmiMI	CAYNNNNRTG	2 cut(s)	1296, 2507
SmlI	CTYRAG	3 cut(s)	560, 898, 1456
SmoI	CTYRAG	3 cut(s)	560, 898, 1456
SspI	AATATT	1 cut(s)	1467
SspMI	CTAG	3 cut(s)	552, 1250, 1643
StyD4I	CCNGG	6 cut(s)	514, 515, 603, 760, 1554, 2571
StyI	CCWWGG	4 cut(s)	258, 471, 1866, 2393
TaiI	ACGT	3 cut(s)	438, 1381, 2422
TaqI	TCGA	1 cut(s)	205
TauI	GCSGC	5 cut(s)	8, 11, 215, 1124, 1535
TfiI	GAWTC	5 cut(s)	202, 503, 1159, 1669, 1800
Tru1I	TTAA	5 cut(s)	561, 791, 899, 1457, 1706
Tru9I	TTAA	5 cut(s)	561, 791, 899, 1457, 1706
TseFI	GTSAC	2 cut(s)	573, 2301
Tsp45I	GTSAC	2 cut(s)	573, 2301
TspGWI	ACGGA	2 cut(s)	1120, 1621
TspMI	CCCGGG	1 cut(s)	515
Vha464I	CTTAAG	3 cut(s)	560, 898, 1456
VpaK11BI	GGWCC	1 cut(s)	1999
VspI	ATTAAT	1 cut(s)	1706
XapI	RAATTY	7 cut(s)	854, 1099, 1689, 1732, 1907, 2114, 2229
XceI	RCATGY	1 cut(s)	805
XmaI	CCCGGG	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	598
XspI	CTAG	3 cut(s)	552, 1250, 1643
Zsp2I	ATGCAT	3 cut(s)	250, 466, 2446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.