Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024310.1

Orthogroup ID

OG0007704

Physical Location & Seq

Genomic Coordinates Forward (+)

8683 .. 13268

Gene Structure 4586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024310.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atggcggcggcgagtgccccgtggcagccaaaggaggagggcctcacggcgatctgtgggctgctggagcagcagatttcaccgacttcctccgctgacaagtctcagatttggcaccaactccaaacctactctcagaaccccgagttccataattaccttgttttcattctcgcacgcgctgagggtacatcagtggagattcgacaagcggcggggttgcttttgaaaaacaaccttagaaatgcatacagctccatggatcctgcatgccagcagtatatcaagtccgaattactgccttgcttgggatcaccagataggcacatcaggtctacagtaggcaccattataagtgttgttgttcaacttggaggagttatgggatggccggaattactgcaagctcttgtaacttgtttggacagtaatgacgtaaatcacatggaaggtgctatggatgcattatccaaggtttgtgaggatatacctcaggtgcttgattcagatgtacccgggttgcctgaacgccccatcaacatattccttcctagaatgcttaagcttttccagtcaccacattcatccctcagaaagctttccctgggttctgtaaatcaatacattatgttgatgccagcagctttatatgcgtctatggatcaatatcttcaggggttgtttgtccttgctaatgacccttcttcagaagtgaggaaattggtatgtgcagcatttgttcagctgattgaagttcgtccagggttcttggagccacagttgaggaacttaattgaatacatgttgcaagtcaacaaggacaccgatgaagaagttgcccttgaagcctgtgaattctggtctgcatattgtgaggctgagttaccacctgagatcttaagagagtttttaccccgtctaattccgattttgctgtcaaacatggcttacgctgaggatgatgaatcccttgttgatgctgaggaggatggctctgtcccagaccgtgatcaggatatcaaacctcgttttcattcatcgcggtttcatggatctgatggtgcggaagaagatgtaatttcccgcctcataatgttgctgatattgaattcaaatgtttggctgctagttccaataagtggaatatcttttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

385

Amino Acids

42.9

Weight (kDa)

4.58

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16950 AT2G16950
fragaria_vesca	FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650
malus_domestica	MD05G1125000.v1.1 MD10G1127800.v1.1
prunus_persica	Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1
pyrus_communis	pycom05g11910 pycom10g10950
rosa_chinensis	RchiOBHm_Chr6g0278851
rosa_laevigata	RLG00000013189
rosa_multiflora	Rmu_sc0004380.1_g000009 Rmu_sc0024310.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189590
rosa_rugosa	Rorug06G0119700
rosa_samantha	Rh6AG228200 Rh6BG233800
rosa_wichuraiana	Rw6G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	114, 344
AccB7I	CCANNNNNTGG	1 cut(s)	1139
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	2 cut(s)	180, 1042
AciI	CCGC	8 cut(s)	5, 8, 93, 212, 215, 1042, 1064, 1084
AclWI	GGATC	5 cut(s)	257, 270, 319, 669, 1060
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	854, 1108
AcuI	CTGAAG	2 cut(s)	656, 690
AfaI	GTAC	2 cut(s)	190, 513
AfiI	CCNNNNNNNGG	3 cut(s)	308, 1012, 1139
AflII	CTTAAG	2 cut(s)	560, 898
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	8 cut(s)	229, 368, 752, 797, 845, 1108, 1113, 1154
AjnI	CCWGG	2 cut(s)	603, 760
AluBI	AGCT	6 cut(s)	255, 407, 565, 598, 644, 745
AluI	AGCT	6 cut(s)	255, 407, 565, 598, 644, 745
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	5 cut(s)	257, 270, 319, 669, 1060
Ama87I	CYCGRG	2 cut(s)	143, 515
AoxI	GGCC	2 cut(s)	40, 389
ApeKI	GCWGC	6 cut(s)	25, 61, 70, 641, 731, 1123
ApoI	RAATTY	2 cut(s)	854, 1108
Asp700I	GAANNNNTTC	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	2 cut(s)	516, 517
AsuHPI	GGTGA	3 cut(s)	72, 306, 567
AvaI	CYCGRG	2 cut(s)	143, 515
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	19
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	2 cut(s)	114, 344
BbvCI	CCTCAGC	3 cut(s)	183, 954, 981
BbvI	GCAGC	6 cut(s)	37, 48, 82, 653, 743, 1110
BccI	CCATC	4 cut(s)	381, 542, 983, 1052
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	605, 762
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	2 cut(s)	516, 517
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	552, 1127
BfmI	CTRYAG	1 cut(s)	336
BfrI	CTTAAG	2 cut(s)	560, 898
BglII	AGATCT	1 cut(s)	894
BisI	GCNGC	9 cut(s)	6, 9, 26, 62, 71, 213, 642, 732, 1124
BlsI	GCNGC	9 cut(s)	7, 10, 27, 63, 72, 214, 643, 733, 1125
Bme1390I	CCNGG	4 cut(s)	516, 517, 605, 762
BmeT110I	CYCGRG	2 cut(s)	143, 515
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	4 cut(s)	116, 264, 346, 774
BmrFI	CCNGG	4 cut(s)	516, 517, 605, 762
BmsI	GCATC	3 cut(s)	451, 624, 967
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	3 cut(s)	183, 954, 981
BpuMI	CCSGG	2 cut(s)	516, 517
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	7 cut(s)	20, 258, 471, 515, 603, 604, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 1012, 1139
Bse1I	ACTGG	1 cut(s)	571
Bse21I	CCTNAGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	605, 762
BseDI	CCNNGG	7 cut(s)	20, 258, 471, 515, 603, 604, 761
BseGI	GGATG	5 cut(s)	392, 466, 584, 964, 994
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	308, 1012, 1139
BseMII	CTCAG	9 cut(s)	119, 149, 174, 506, 604, 870, 882, 945, 972
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	3 cut(s)	50, 390, 998
BseSI	GKGCMC	1 cut(s)	19
BseXI	GCAGC	6 cut(s)	37, 48, 82, 653, 743, 1110
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	2 cut(s)	180, 1042
BshFI	GGCC	2 cut(s)	42, 391
BshNI	GGYRCC	2 cut(s)	114, 344
BsiHKCI	CYCGRG	2 cut(s)	143, 515
BsiSI	CCGG	2 cut(s)	392, 516
BslFI	GGGAC	1 cut(s)	983
BslI	CCNNNNNNNGG	3 cut(s)	308, 1012, 1139
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	983
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	2 cut(s)	42, 391
BsoBI	CYCGRG	2 cut(s)	143, 515
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	8 cut(s)	5, 8, 93, 212, 215, 1042, 1064, 1084
BspANI	GGCC	2 cut(s)	42, 391
BspCNI	CTCAG	9 cut(s)	118, 148, 175, 505, 603, 871, 883, 946, 973
BspFNI	CGCG	2 cut(s)	180, 1042
BspLI	GGNNCC	4 cut(s)	116, 264, 346, 774
BspPI	GGATC	5 cut(s)	257, 270, 319, 669, 1060
BspT107I	GGYRCC	2 cut(s)	114, 344
BspTI	CTTAAG	2 cut(s)	560, 898
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	7 cut(s)	20, 258, 471, 515, 603, 604, 761
BssMI	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
BssT1I	CCWWGG	2 cut(s)	258, 471
Bst2UI	CCWGG	2 cut(s)	605, 762
Bst4CI	ACNGT	4 cut(s)	340, 428, 780, 1007
BstAFI	CTTAAG	2 cut(s)	560, 898
BstC8I	GCNNGC	5 cut(s)	178, 271, 275, 405, 639
BstDSI	CCRYGG	2 cut(s)	20, 258
BstF5I	GGATG	5 cut(s)	392, 466, 584, 964, 994
BstFNI	CGCG	2 cut(s)	180, 1042
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	7 cut(s)	54, 265, 314, 664, 897, 1012, 1055
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 67, 70, 461, 650, 845
BstNI	CCWGG	2 cut(s)	605, 762
BstNSI	RCATGY	2 cut(s)	273, 805
BstSCI	CCNGG	4 cut(s)	514, 515, 603, 760
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	2 cut(s)	180, 1042
BstV1I	GCAGC	6 cut(s)	37, 48, 82, 653, 743, 1110
BstX2I	RGATCY	3 cut(s)	262, 894, 1052
BstYI	RGATCY	3 cut(s)	262, 894, 1052
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	42, 391
BtgI	CCRYGG	2 cut(s)	20, 258
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	5 cut(s)	392, 466, 584, 964, 994
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	5 cut(s)	178, 271, 275, 405, 639
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	40
Cfr9I	CCCGGG	1 cut(s)	515
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	2 cut(s)	189, 512
CviAII	CATG	6 cut(s)	259, 270, 445, 802, 943, 1049
CviQI	GTAC	2 cut(s)	189, 512
DpnI	GATC	7 cut(s)	53, 264, 313, 663, 896, 1011, 1054
DpnII	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
EaeI	YGGCCR	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	258, 471
Eco32I	GATATC	1 cut(s)	1018
Eco57I	CTGAAG	2 cut(s)	656, 690
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	143, 515
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	2 cut(s)	854, 1108
EcoRII	CCWGG	2 cut(s)	603, 760
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	2 cut(s)	258, 471
EcoT22I	ATGCAT	2 cut(s)	250, 466
ErhI	CCWWGG	2 cut(s)	258, 471
FaeI	CATG	6 cut(s)	262, 273, 448, 805, 946, 1052
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	1 cut(s)	983
FatI	CATG	6 cut(s)	258, 269, 444, 801, 942, 1048
FauI	CCCGC	2 cut(s)	208, 1091
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	9 cut(s)	6, 9, 26, 62, 71, 213, 642, 732, 1124
FokI	GGATG	5 cut(s)	399, 473, 571, 971, 1001
Fsp4HI	GCNGC	9 cut(s)	6, 9, 26, 62, 71, 213, 642, 732, 1124
FspBI	CTAG	2 cut(s)	552, 1127
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	9 cut(s)	6, 9, 26, 62, 71, 213, 642, 732, 1124
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	42, 391
HapII	CCGG	2 cut(s)	392, 516
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	6 cut(s)	262, 273, 448, 805, 946, 1052
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HindIII	AAGCTT	2 cut(s)	563, 596
HinfI	GANTC	3 cut(s)	202, 503, 965
HpaII	CCGG	2 cut(s)	392, 516
HphI	GGTGA	3 cut(s)	72, 306, 567
Hpy166II	GTNNAC	2 cut(s)	336, 814
Hpy188I	TCNGA	8 cut(s)	108, 138, 292, 508, 593, 709, 927, 1057
Hpy188III	TCNNGA	1 cut(s)	1013
Hpy8I	GTNNAC	2 cut(s)	336, 814
HpyAV	CCTTC	3 cut(s)	443, 557, 711
HpyCH4III	ACNGT	4 cut(s)	340, 428, 780, 1007
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	7 cut(s)	248, 269, 403, 464, 731, 808, 866
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 67, 70, 461, 650, 845
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	6 cut(s)	262, 273, 448, 805, 946, 1052
HspAI	GCGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
LmnI	GCTCC	3 cut(s)	67, 260, 772
Lsp1109I	GCAGC	6 cut(s)	37, 48, 82, 653, 743, 1110
LweI	GCATC	3 cut(s)	451, 624, 967
MaeI	CTAG	2 cut(s)	552, 1127
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	412, 573, 882
MalI	GATC	7 cut(s)	53, 264, 313, 663, 896, 1011, 1054
MboI	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
MboII	GAAGA	5 cut(s)	662, 696, 842, 1079, 1082
MflI	RGATCY	3 cut(s)	262, 894, 1052
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	9 cut(s)	154, 293, 395, 719, 792, 854, 921, 1077, 1108
Mph1103I	ATGCAT	2 cut(s)	250, 466
MroXI	GAANNNNTTC	1 cut(s)	598
MseI	TTAA	3 cut(s)	561, 791, 899
MspA1I	CMGCKG	2 cut(s)	95, 745
MspCI	CTTAAG	2 cut(s)	560, 898
MspI	CCGG	2 cut(s)	392, 516
MspR9I	CCNGG	4 cut(s)	516, 517, 605, 762
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	2 cut(s)	605, 762
MvnI	CGCG	2 cut(s)	180, 1042
MwoI	GCNNNNNNNGC	6 cut(s)	14, 67, 70, 461, 650, 845
NciI	CCSGG	2 cut(s)	516, 517
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
NlaIII	CATG	6 cut(s)	262, 273, 448, 805, 946, 1052
NlaIV	GGNNCC	4 cut(s)	116, 264, 346, 774
NmuCI	GTSAC	1 cut(s)	573
NsiI	ATGCAT	2 cut(s)	250, 466
NspI	RCATGY	2 cut(s)	273, 805
PaeI	GCATGC	1 cut(s)	273
PasI	CCCWGGG	1 cut(s)	604
PciI	ACATGT	1 cut(s)	801
PctI	GAATGC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	202, 503, 965
PflMI	CCANNNNNTGG	1 cut(s)	1139
PkrI	GCNGC	9 cut(s)	7, 10, 27, 63, 72, 214, 643, 733, 1125
PscI	ACATGT	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	603, 760
PspGI	CCWGG	2 cut(s)	603, 760
PspN4I	GGNNCC	4 cut(s)	116, 264, 346, 774
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	3 cut(s)	262, 894, 1052
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	2 cut(s)	190, 513
RsaNI	GTAC	2 cut(s)	189, 512
SaqAI	TTAA	3 cut(s)	561, 791, 899
SatI	GCNGC	9 cut(s)	6, 9, 26, 62, 71, 213, 642, 732, 1124
Sau3AI	GATC	7 cut(s)	51, 262, 311, 661, 894, 1009, 1052
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	4 cut(s)	516, 517, 605, 762
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	451, 624, 967
SfcI	CTRYAG	1 cut(s)	336
SmaI	CCCGGG	1 cut(s)	517
SmlI	CTYRAG	2 cut(s)	560, 898
SmoI	CTYRAG	2 cut(s)	560, 898
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	9 cut(s)	154, 293, 395, 719, 792, 854, 921, 1077, 1108
SsiI	CCGC	8 cut(s)	5, 8, 93, 212, 215, 1042, 1064, 1084
SspMI	CTAG	2 cut(s)	552, 1127
StyD4I	CCNGG	4 cut(s)	514, 515, 603, 760
StyI	CCWWGG	2 cut(s)	258, 471
TaaI	ACNGT	4 cut(s)	340, 428, 780, 1007
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	1 cut(s)	205
TasI	AATT	9 cut(s)	154, 293, 395, 719, 792, 854, 921, 1077, 1108
TauI	GCSGC	3 cut(s)	8, 11, 215
TfiI	GAWTC	3 cut(s)	202, 503, 965
Tru1I	TTAA	3 cut(s)	561, 791, 899
Tru9I	TTAA	3 cut(s)	561, 791, 899
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	6 cut(s)	25, 61, 70, 641, 731, 1123
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	7 cut(s)	157, 573, 843, 978, 1022, 1026, 1037
TspMI	CCCGGG	1 cut(s)	515
TspRI	CASTG	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	1139
Vha464I	CTTAAG	2 cut(s)	560, 898
XapI	RAATTY	2 cut(s)	854, 1108
XceI	RCATGY	2 cut(s)	273, 805
XmaI	CCCGGG	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	598
XspI	CTAG	2 cut(s)	552, 1127
Zsp2I	ATGCAT	2 cut(s)	250, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.