Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007704

Physical Location & Seq

Genomic Coordinates Forward (+)

16448492 .. 16449290

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0119700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAGTATTCCATCCCTTGCTTTCTGCTAGTTCTCTCCATTTTCTTGTTTTCAGAGCTCACCGATGCGAGAAAGGACATGGGAGGCTACTGGGAGAGTGTGATGAATGACCAGCCCATGCCAGAAGCCATTAAAGAACTCTTCTCCCATCAAGATGAAGATGTGCCATCTCTCTCTGCTTCAACAAACAAGGACGACCGTTTTGTTAGGGACTTCGACATTAGGCCTAATGTCATCATATACCACAGTGCTCATCACGATCATGCTCATCATGAGCCTGAAGAAATGAAGCATGATATGGAACCCAAACCTTATATTCAAACTGTCAATCATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

112

Amino Acids

13.1

Weight (kDa)

5.17

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Organ_specific	PF10950	25 - 109	4.2e-12	Organ specific protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16950 AT2G16950
fragaria_vesca	FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650
malus_domestica	MD05G1125000.v1.1 MD10G1127800.v1.1
prunus_persica	Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1
pyrus_communis	pycom05g11910 pycom10g10950
rosa_chinensis	RchiOBHm_Chr6g0278851
rosa_laevigata	RLG00000013189
rosa_multiflora	Rmu_sc0004380.1_g000009 Rmu_sc0024310.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189590
rosa_rugosa	Rorug06G0119700
rosa_samantha	Rh6AG228200 Rh6BG233800
rosa_wichuraiana	Rw6G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	183, 320
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	2 cut(s)	60, 253
AoxI	GGCC	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsuHPI	GGTGA	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	60, 253
BccI	CCATC	3 cut(s)	20, 156, 175
BfaI	CTAG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	60, 253
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	60, 253
Bsp143I	GATC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	200, 248, 325
Bst6I	CTCTTC	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	253
CciI	TCATGA	1 cut(s)	271
CviAII	CATG	6 cut(s)	79, 118, 263, 272, 293, 332
CviJI	RGCY	7 cut(s)	58, 87, 115, 128, 226, 277, 336
CviKI_1	RGCY	7 cut(s)	58, 87, 115, 128, 226, 277, 336
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	6 cut(s)	82, 121, 266, 275, 296, 335
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	6 cut(s)	78, 117, 262, 271, 292, 331
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	226
Hin1II	CATG	6 cut(s)	82, 121, 266, 275, 296, 335
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	152, 257, 272
HpyCH4III	ACNGT	3 cut(s)	200, 248, 325
Hsp92II	CATG	6 cut(s)	82, 121, 266, 275, 296, 335
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	4 cut(s)	76, 125, 135, 291
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	29
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	133, 170, 293
MhlI	GDGCHC	2 cut(s)	60, 253
MnlI	CCTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	153, 261
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	82, 121, 266, 275, 296, 335
NlaIV	GGNNCC	1 cut(s)	303
PagI	TCATGA	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	303
RseI	CAYNNNNRTG	2 cut(s)	153, 261
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	60, 253
SetI	ASST	2 cut(s)	60, 313
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	153, 261
SseBI	AGGCCT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	200, 248, 325
TaqI	TCGA	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	17, 119, 171, 302
TspRI	CASTG	1 cut(s)	253
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.