Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004380.1

Orthogroup ID

OG0007704

Physical Location & Seq

Genomic Coordinates Forward (+)

48991 .. 63905

Gene Structure 14915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004380.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3258 bp

atggcggcggcgagtgccccgtggcagccacagaaggatggcctcacggcgatctgtgggctgctggagcagcagatttcgccgacttcctccgctgacaagtctcagatttggcaccaactccaagcctactctcagaaccccgagttccataattaccttgttttcattctcacacgcgccgagggtacatcagtggagattcgacaagcggcggggttgcttttgaaaaacaaccttagaaatgcatacagctccatggatcctgcatgccagcagtatatcaagtccgaattactgccttgcttgggatcaccagataggcacatcaggtctacagtaggcaccattataagtgttgttgttcaacttggaggagttatgggatggccggaattactgcaagctcttgtaacttgtttggacagtaatgacgtaaatcacatggaaggtgctatggatgcattatccaaggaggatggctctgtcccagaccgtgatcaggatatcaaacctcgttttcattcatcgcggtttcatggatctgatggtgcggaagaagatgatgatgatattgtcaatgtttggaatttacggaaatgcagtgcagcggccgttgatatcctgtcaactgtgtttggggatgagattctcccaacactgatggcctttgttcaggccaagttgtccaacagtgatgatgaaacatggaaagaaagggaagctgctgttttggctctaggggcggtagctgaaggttgcattattggtctttatcctcatttgaatgagatcattgcatatcttattcctctcttagacgataagtttccacttataaggagtatatcctgttggacactttcacgtttcagcaagttcattgttgagggtgttggacatcaacaaggttatgagcagtttgacaaggttcttctgggtctcttaagaagaatattagataataacaagcgggtacaggaggctgcttgctcagcttttgcgacacttgaagaggaggcggctgatgcgttggcaccacgcctggaaactattttacaacaccttatgtgcgcttttgggaaatatcagagacggaaccttagaattgtatatgatgccattggaactctagcagatgctgtcggtggggagttgaatcgtcccaattatcttgaaattctcatgccaccattaattgcaaagtggcaacaacttgcaaattcggataaagatctgtttccattgctggagtgctttacttctatttcgcaggcattgggtgccggattctctccatttgcagagccagtgtttcagaggtgcataagcatcatacagtcccaacaagttgccaaggttgatccggtcgcttcaggagtccagtatgataaagaatttattgtgtgctctcttgacttgctttctggacttacagaaggtcttggtagtgggatagaaagtttggtttcacaaagcaatttgaaggacctgcttttgcactgttgcatggatgatgcttcggatgtccgacagagtggctttgccttacttggggatcttgcaagagtatgccctgttcatttgcgtcctcgtttgccggaatttcttgatgttgcagccaaacaactgaatactcctaagctgaaggaaactgtttcagtggcaaataatgcgtgttgggccattggtgagttagcagtcaaggttcatcaagaaatttctccaattgttttgacggtcatgtcttgcttagtccccatactgcagcatccagaggcgctcaacaagtcactgattgagaacagtgctatcacgcttgggaggcttgcttatgtttgcccagagcttgtggctccgcatatggagcatttcatgcagccatggtgcattgctttgtcaatgtatagtagtagtagtagtagtagagcgctcaacaagtcactgattgagaacagtgctatcacgcttgggaggcttgcatatgtttgtccagagcttgtggctccgcatatggagcatttcatgcagccatggtgcattgctttgtcaatgatacgtgatgatatagaaaaggaggatgcattccgaggtctatgcgcattggttagaacaaatccatccggagcattgagttcactcatatatatgtgcaatgctattgccagttggcatgaaataaggagtgaagagctacataatgcagtttgccaggtgttgcacggttataagcagatgcttgtgaatggagcgtgggaacagtgtatgtctgctttggagccacaagtcaagaacaagctatcaaaataccaagtgttgcttaaccgggggattttccgaatccagagtcaagttggaactatcttcaggcagttcttgctgtccgaagggtttgttgaaatccatacaccaaaactgatcgctggttcaagtgaaggtggggcttcggtgtttaaactggactacgtgaaggggcaacctgcctgccttgcccagtcaccgcagctccacaagcagatgtccatctgtgctgattttggtcgtgttttcgaggttggttctgttttcagagctgagaactctgatacacataggcatctatgtgagttcactggtctcgatattgagatggagattgagtggagctattttgaggttatggatattgttaacaggttgtttgtcaatatgtttgactatttgaacaaaaattgtgagaaggaacttgaagctgtacgaaggcagtatcccttcgagccattaaagtacttgcctgagactctacgtctcaccttcgcggaaggtgttcaaatgctaaaggatgccggtgtggaagttgatcctatgggggacttagatactaaacaagagaggaagttgggccaaatagttttggagaaatatggcactgagttctacatacttcaccgctatccgttggctgtgaggcctttctataccatgccttgcgacgataatcctgaatacagcaattcgtttgacgtcttcattcgaggtgaggagattatatcaggtgcacaacgtatccatgtaccagaattattggtcgaacgtgcttcagcacgtggaattgaagtagagacaatatcaacatatattgattccttcagatatggtgcacctccccacggtggatttggagtagggctggagcgtgttgtgatgctcttctgtggtttgaataacatccgcaaaacatctttattcccgcgtgatccagaccggctagcgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT HEAT_EZ IBN_N Ribosomal_S17

Protein Analysis

1085

Amino Acids

120.85

Weight (kDa)

5.24

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16950 AT2G16950
fragaria_vesca	FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650 FvH4_2g15650
malus_domestica	MD05G1125000.v1.1 MD10G1127800.v1.1
prunus_persica	Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1 Prupe.8G169000_v2.0.a1
pyrus_communis	pycom05g11910 pycom10g10950
rosa_chinensis	RchiOBHm_Chr6g0278851
rosa_laevigata	RLG00000013189
rosa_multiflora	Rmu_sc0004380.1_g000009 Rmu_sc0024310.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189590
rosa_rugosa	Rorug06G0119700
rosa_samantha	Rh6AG228200 Rh6BG233800
rosa_wichuraiana	Rw6G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	353, 839, 2229
AasI	GACNNNNNNGTC	1 cut(s)	1744
AatII	GACGTC	1 cut(s)	3006
Acc16I	TGCGCA	1 cut(s)	2101
Acc36I	ACCTGC	2 cut(s)	1500, 2488
AccB1I	GGYRCC	4 cut(s)	114, 344, 1036, 1283
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	4 cut(s)	180, 532, 2798, 3232
AccIII	TCCGGA	1 cut(s)	2123
AclWI	GGATC	8 cut(s)	257, 270, 319, 550, 1358, 1566, 2834, 3230
AcoI	YGGCCR	2 cut(s)	389, 612
AcsI	RAATTY	6 cut(s)	589, 1179, 1222, 1397, 1604, 1719
AcuI	CTGAAG	6 cut(s)	774, 1359, 1667, 2350, 3063, 3112
AcvI	CACGTG	1 cut(s)	3086
AcyI	GRCGYC	1 cut(s)	3003
AfaI	GTAC	5 cut(s)	190, 978, 2736, 2768, 3054
AfeI	AGCGCT	1 cut(s)	1932
AfiI	CCNNNNNNNGG	5 cut(s)	308, 502, 1554, 3149, 3152
AflII	CTTAAG	1 cut(s)	946
AhdI	GACNNNNNGTC	1 cut(s)	2784
AjnI	CCWGG	2 cut(s)	1044, 2211
Alw21I	GWGCWC	3 cut(s)	1412, 3040, 3142
Alw26I	GTCTC	7 cut(s)	108, 947, 1087, 2621, 2771, 2792, 3095
Alw44I	GTGCAC	2 cut(s)	3036, 3138
AlwI	GGATC	8 cut(s)	257, 270, 319, 550, 1358, 1566, 2834, 3230
AlwNI	CAGNNNCTG	1 cut(s)	1142
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	2123
Aor51HI	AGCGCT	1 cut(s)	1932
AoxI	GGCC	8 cut(s)	40, 389, 612, 666, 678, 1683, 2881, 2948
ApaLI	GTGCAC	2 cut(s)	3036, 3138
ApoI	RAATTY	6 cut(s)	589, 1179, 1222, 1397, 1604, 1719
ArsI	GACNNNNNNTTYG	2 cut(s)	2332, 2364
AseI	ATTAAT	1 cut(s)	1196
Asp700I	GAANNNNTTC	1 cut(s)	2805
AspLEI	GCGC	6 cut(s)	182, 1076, 1783, 1933, 2102, 3253
AspS9I	GGNCC	3 cut(s)	1489, 1683, 2881
AsuC2I	CCSGG	1 cut(s)	2327
AsuHPI	GGTGA	6 cut(s)	306, 1703, 2490, 2782, 2918, 3029
AsuNHI	GCTAGC	1 cut(s)	3247
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	1489
BaeGI	GKGCMC	3 cut(s)	19, 3040, 3142
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	4 cut(s)	114, 344, 1036, 1283
BbrPI	CACGTG	1 cut(s)	3086
BbsI	GAAGAC	1 cut(s)	2998
Bbv12I	GWGCWC	3 cut(s)	1412, 3040, 3142
BccI	CCATC	8 cut(s)	32, 381, 473, 542, 658, 2128, 2531, 2623
BceAI	ACGGC	2 cut(s)	63, 599
BcgI	CGANNNNNNTGC	2 cut(s)	2079, 2113
BciT130I	CCWGG	2 cut(s)	1046, 2213
BciVI	GTATCC	2 cut(s)	2757, 3056
BclI	TGATCA	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	2327
BcoDI	GTCTC	7 cut(s)	108, 947, 1087, 2621, 2771, 2792, 3095
BfaI	CTAG	3 cut(s)	740, 1133, 3248
BfmI	CTRYAG	2 cut(s)	336, 1766
BfoI	RGCGCY	3 cut(s)	1784, 1934, 3254
BfrI	CTTAAG	1 cut(s)	946
BfuAI	ACCTGC	2 cut(s)	1500, 2488
BfuI	GTATCC	2 cut(s)	2757, 3056
BglII	AGATCT	1 cut(s)	1234
BlpI	GCTNAGC	1 cut(s)	994
BmcAI	AGTACT	1 cut(s)	2768
Bme1390I	CCNGG	3 cut(s)	1046, 2213, 2327
Bme18I	GGWCC	1 cut(s)	1489
BmeRI	GACNNNNNGTC	1 cut(s)	2784
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	1489, 1683, 2881
BmiI	GGNNCC	9 cut(s)	116, 264, 346, 1038, 1100, 1285, 1857, 2007, 2280
BmrFI	CCNGG	3 cut(s)	1046, 2213, 2327
BmrI	ACTGGG	1 cut(s)	2488
BmtI	GCTAGC	1 cut(s)	3251
BmuI	ACTGGG	1 cut(s)	2488
BpiI	GAAGAC	1 cut(s)	2998
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpmI	CTGGAG	3 cut(s)	86, 1271, 3191
Bpu10I	CCTNAGC	1 cut(s)	1641
Bpu1102I	GCTNAGC	1 cut(s)	994
BpuMI	CCSGG	1 cut(s)	2327
BsaAI	YACGTR	3 cut(s)	2060, 2467, 3086
BsaBI	GATNNNNATC	2 cut(s)	1233, 2522
BsaHI	GRCGYC	1 cut(s)	3003
BsaI	GGTCTC	2 cut(s)	947, 2621
BsaWI	WCCGGW	2 cut(s)	1366, 2123
BsaXI	ACNNNNNCTCC	4 cut(s)	2490, 2520, 2624, 2654
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 502, 1554, 3149, 3152
Bse118I	RCCGGY	2 cut(s)	2825, 3243
Bse1I	ACTGG	6 cut(s)	1310, 1384, 2166, 2463, 2494, 2617
Bse3DI	GCAATG	5 cut(s)	795, 1244, 1890, 2040, 2161
Bse8I	GATNNNNATC	2 cut(s)	1233, 2522
BseAI	TCCGGA	1 cut(s)	2123
BseBI	CCWGG	2 cut(s)	1046, 2213
BseJI	GATNNNNATC	2 cut(s)	1233, 2522
BseLI	CCNNNNNNNGG	5 cut(s)	308, 502, 1554, 3149, 3152
BseMI	GCAATG	5 cut(s)	795, 1244, 1890, 2040, 2161
BseMII	CTCAG	6 cut(s)	119, 149, 1008, 2565, 2766, 2901
BseNI	ACTGG	6 cut(s)	1310, 1384, 2166, 2463, 2494, 2617
BseRI	GAGGAG	3 cut(s)	390, 1031, 3035
BseSI	GKGCMC	3 cut(s)	19, 3040, 3142
BseX3I	CGGCCG	1 cut(s)	612
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	4 cut(s)	180, 532, 2798, 3232
Bsh1285I	CGRYCG	2 cut(s)	615, 1371
BshFI	GGCC	8 cut(s)	42, 391, 614, 668, 680, 1685, 2883, 2950
BshNI	GGYRCC	4 cut(s)	114, 344, 1036, 1283
BsiEI	CGRYCG	2 cut(s)	615, 1371
BsiHKAI	GWGCWC	3 cut(s)	1412, 3040, 3142
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	8 cut(s)	392, 1287, 1367, 1601, 2124, 2326, 2826, 3244
BslFI	GGGAC	5 cut(s)	473, 1149, 1327, 1742, 2864
BslI	CCNNNNNNNGG	5 cut(s)	308, 502, 1554, 3149, 3152
BsmAI	GTCTC	7 cut(s)	108, 947, 1087, 2621, 2771, 2792, 3095
BsmBI	CGTCTC	2 cut(s)	1087, 2792
BsmFI	GGGAC	5 cut(s)	473, 1149, 1327, 1742, 2864
BsmI	GAATGC	1 cut(s)	2084
BsnI	GGCC	8 cut(s)	42, 391, 614, 668, 680, 1685, 2883, 2950
Bso31I	GGTCTC	2 cut(s)	947, 2621
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	4 cut(s)	19, 1412, 3040, 3142
Bsp13I	TCCGGA	1 cut(s)	2123
Bsp1720I	GCTNAGC	1 cut(s)	994
Bsp19I	CCATGG	3 cut(s)	258, 1883, 2033
BspANI	GGCC	8 cut(s)	42, 391, 614, 668, 680, 1685, 2883, 2950
BspCNI	CTCAG	6 cut(s)	118, 148, 1007, 2566, 2767, 2902
BspEI	TCCGGA	1 cut(s)	2123
BspFNI	CGCG	4 cut(s)	180, 532, 2798, 3232
BspLI	GGNNCC	9 cut(s)	116, 264, 346, 1038, 1100, 1285, 1857, 2007, 2280
BspMAI	CTGCAG	1 cut(s)	1770
BspMI	ACCTGC	2 cut(s)	1500, 2488
BspOI	GCTAGC	1 cut(s)	3251
BspPI	GGATC	8 cut(s)	257, 270, 319, 550, 1358, 1566, 2834, 3230
BspQI	GCTCTTC	2 cut(s)	2184, 3194
BspT107I	GGYRCC	4 cut(s)	114, 344, 1036, 1283
BspTI	CTTAAG	1 cut(s)	946
BspTNI	GGTCTC	2 cut(s)	947, 2621
BsrDI	GCAATG	5 cut(s)	795, 1244, 1890, 2040, 2161
BsrFI	RCCGGY	2 cut(s)	2825, 3243
BsrI	ACTGG	6 cut(s)	1310, 1384, 2166, 2463, 2494, 2617
BssAI	RCCGGY	2 cut(s)	2825, 3243
BssNI	GRCGYC	1 cut(s)	3003
BssT1I	CCWWGG	5 cut(s)	258, 471, 1356, 1883, 2033
Bst2UI	CCWGG	2 cut(s)	1046, 2213
Bst6I	CTCTTC	3 cut(s)	1008, 2184, 3194
BstACI	GRCGYC	1 cut(s)	3003
BstAFI	CTTAAG	1 cut(s)	946
BstAPI	GCANNNNNTGC	5 cut(s)	1283, 1673, 1876, 2026, 2377
BstBAI	YACGTR	3 cut(s)	2060, 2467, 3086
BstC8I	GCNNGC	9 cut(s)	271, 275, 405, 991, 1275, 1830, 1980, 2485, 3249
BstDSI	CCRYGG	5 cut(s)	20, 258, 1883, 2033, 3148
BstFNI	CGCG	4 cut(s)	180, 532, 2798, 3232
BstH2I	RGCGCY	3 cut(s)	1784, 1934, 3254
BstHHI	GCGC	6 cut(s)	182, 1076, 1783, 1933, 2102, 3253
BstMAI	GTCTC	7 cut(s)	108, 947, 1087, 2621, 2771, 2792, 3095
BstMCI	CGRYCG	2 cut(s)	615, 1371
BstNI	CCWGG	2 cut(s)	1046, 2213
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	3 cut(s)	1044, 2211, 2325
BstSFI	CTRYAG	2 cut(s)	336, 1766
BstSLI	GKGCMC	3 cut(s)	19, 3040, 3142
BstUI	CGCG	4 cut(s)	180, 532, 2798, 3232
BstV2I	GAAGAC	1 cut(s)	2998
BstX2I	RGATCY	4 cut(s)	262, 542, 1234, 1558
BstYI	RGATCY	4 cut(s)	262, 542, 1234, 1558
BstZI	CGGCCG	1 cut(s)	612
BsuI	GTATCC	2 cut(s)	2757, 3056
BsuRI	GGCC	8 cut(s)	42, 391, 614, 668, 680, 1685, 2883, 2950
BtgI	CCRYGG	5 cut(s)	20, 258, 1883, 2033, 3148
BtgZI	GCGATG	1 cut(s)	513
BtsI	GCAGTG	1 cut(s)	610
BveI	ACCTGC	2 cut(s)	1500, 2488
Cac8I	GCNNGC	9 cut(s)	271, 275, 405, 991, 1275, 1830, 1980, 2485, 3249
CaiI	CAGNNNCTG	1 cut(s)	1142
CfoI	GCGC	6 cut(s)	182, 1076, 1783, 1933, 2102, 3253
Cfr10I	RCCGGY	2 cut(s)	2825, 3243
Cfr13I	GGNCC	3 cut(s)	1489, 1683, 2881
CseI	GACGC	1 cut(s)	1577
Csp6I	GTAC	5 cut(s)	189, 977, 2735, 2767, 3053
CviQI	GTAC	5 cut(s)	189, 977, 2735, 2767, 3053
DraI	TTTAAA	1 cut(s)	2455
DrdI	GACNNNNNNGTC	1 cut(s)	1744
DriI	GACNNNNNGTC	1 cut(s)	2784
DseDI	GACNNNNNNGTC	1 cut(s)	1744
EaeI	YGGCCR	2 cut(s)	389, 612
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	3 cut(s)	1008, 2184, 3194
Eam1105I	GACNNNNNGTC	1 cut(s)	2784
EarI	CTCTTC	3 cut(s)	1008, 2184, 3194
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	5 cut(s)	258, 471, 1356, 1883, 2033
Eco147I	AGGCCT	1 cut(s)	2950
Eco31I	GGTCTC	2 cut(s)	947, 2621
Eco32I	GATATC	2 cut(s)	508, 622
Eco47I	GGWCC	1 cut(s)	1489
Eco47III	AGCGCT	1 cut(s)	1932
Eco52I	CGGCCG	1 cut(s)	612
Eco57I	CTGAAG	6 cut(s)	774, 1359, 1667, 2350, 3063, 3112
Eco72I	CACGTG	1 cut(s)	3086
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	1489
EcoRII	CCWGG	2 cut(s)	1044, 2211
EcoRV	GATATC	2 cut(s)	508, 622
EcoT14I	CCWWGG	5 cut(s)	258, 471, 1356, 1883, 2033
EcoT22I	ATGCAT	3 cut(s)	250, 466, 2086
ErhI	CCWWGG	5 cut(s)	258, 471, 1356, 1883, 2033
Esp3I	CGTCTC	2 cut(s)	1087, 2792
FalI	AAGNNNNNCTT	2 cut(s)	2304, 2336
FaqI	GGGAC	5 cut(s)	473, 1149, 1327, 1742, 2864
FauI	CCCGC	3 cut(s)	208, 966, 3237
FauNDI	CATATG	3 cut(s)	1863, 1984, 2013
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	335
FspAI	RTGCGCAY	1 cut(s)	2101
FspBI	CTAG	3 cut(s)	740, 1133, 3248
FspI	TGCGCA	1 cut(s)	2101
GlaI	GCGC	6 cut(s)	181, 1075, 1782, 1932, 2101, 3252
GsuI	CTGGAG	3 cut(s)	86, 1271, 3191
HaeII	RGCGCY	3 cut(s)	1784, 1934, 3254
HaeIII	GGCC	8 cut(s)	42, 391, 614, 668, 680, 1685, 2883, 2950
HapII	CCGG	8 cut(s)	392, 1287, 1367, 1601, 2124, 2326, 2826, 3244
HgaI	GACGC	1 cut(s)	1577
HhaI	GCGC	6 cut(s)	182, 1076, 1783, 1933, 2102, 3253
Hin1I	GRCGYC	1 cut(s)	3003
Hin6I	GCGC	6 cut(s)	180, 1074, 1781, 1931, 2100, 3251
HinP1I	GCGC	6 cut(s)	180, 1074, 1781, 1931, 2100, 3251
HincII	GTYRAC	2 cut(s)	630, 2671
HindII	GTYRAC	2 cut(s)	630, 2671
HinfI	GANTC	9 cut(s)	202, 649, 1159, 1290, 1380, 2340, 2347, 2779, 3122
HpaI	GTTAAC	1 cut(s)	2671
HpaII	CCGG	8 cut(s)	392, 1287, 1367, 1601, 2124, 2326, 2826, 3244
HphI	GGTGA	6 cut(s)	306, 1703, 2490, 2782, 2918, 3029
Hpy166II	GTNNAC	7 cut(s)	336, 630, 2138, 2610, 2671, 3038, 3140
Hpy8I	GTNNAC	7 cut(s)	336, 630, 2138, 2610, 2671, 3038, 3140
Hpy99I	CGWCG	1 cut(s)	2975
HpyCH4IV	ACGT	9 cut(s)	435, 868, 2059, 2466, 2785, 3003, 3043, 3073, 3085
HpySE526I	ACGT	9 cut(s)	435, 868, 2059, 2466, 2785, 3003, 3043, 3073, 3085
Hsp92I	GRCGYC	1 cut(s)	3003
HspAI	GCGC	6 cut(s)	180, 1074, 1781, 1931, 2100, 3251
Kpn2I	TCCGGA	1 cut(s)	2123
Ksp22I	TGATCA	1 cut(s)	499
KspAI	GTTAAC	1 cut(s)	2671
LguI	GCTCTTC	2 cut(s)	2184, 3194
MaeI	CTAG	3 cut(s)	740, 1133, 3248
MaeII	ACGT	9 cut(s)	435, 868, 2059, 2466, 2785, 3003, 3043, 3073, 3085
MaeIII	GTNAC	4 cut(s)	412, 1791, 1941, 2496
MboII	GAAGA	9 cut(s)	569, 572, 926, 963, 1025, 2201, 2356, 2998, 3181
MfeI	CAATTG	1 cut(s)	1728
MflI	RGATCY	4 cut(s)	262, 542, 1234, 1558
MhlI	GDGCHC	4 cut(s)	19, 1412, 3040, 3142
MlyI	GAGTC	3 cut(s)	1389, 2356, 2773
MmeI	TCCRAC	5 cut(s)	714, 836, 877, 1555, 2335
Mph1103I	ATGCAT	3 cut(s)	250, 466, 2086
MroI	TCCGGA	1 cut(s)	2123
MroXI	GAANNNNTTC	1 cut(s)	2805
MseI	TTAA	6 cut(s)	947, 1196, 2322, 2454, 2670, 2762
MslI	CAYNNNNRTG	3 cut(s)	786, 2147, 2601
MspA1I	CMGCKG	2 cut(s)	95, 611
MspCI	CTTAAG	1 cut(s)	946
MspI	CCGG	8 cut(s)	392, 1287, 1367, 1601, 2124, 2326, 2826, 3244
MspR9I	CCNGG	3 cut(s)	1046, 2213, 2327
MssI	GTTTAAAC	1 cut(s)	2455
MunI	CAATTG	1 cut(s)	1728
Mva1269I	GAATGC	1 cut(s)	2084
MvaI	CCWGG	2 cut(s)	1046, 2213
MvnI	CGCG	4 cut(s)	180, 532, 2798, 3232
NciI	CCSGG	1 cut(s)	2327
NcoI	CCATGG	3 cut(s)	258, 1883, 2033
NdeI	CATATG	3 cut(s)	1863, 1984, 2013
NheI	GCTAGC	1 cut(s)	3247
NlaIV	GGNNCC	9 cut(s)	116, 264, 346, 1038, 1100, 1285, 1857, 2007, 2280
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	3 cut(s)	1791, 1941, 2496
NsbI	TGCGCA	1 cut(s)	2101
NsiI	ATGCAT	3 cut(s)	250, 466, 2086
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PceI	AGGCCT	1 cut(s)	2950
PciSI	GCTCTTC	2 cut(s)	2184, 3194
PctI	GAATGC	1 cut(s)	2084
PdmI	GAANNNNTTC	1 cut(s)	2805
PfeI	GAWTC	6 cut(s)	202, 649, 1159, 1290, 2340, 3122
PleI	GAGTC	3 cut(s)	1388, 2355, 2773
PmaCI	CACGTG	1 cut(s)	3086
PmeI	GTTTAAAC	1 cut(s)	2455
PmlI	CACGTG	1 cut(s)	3086
PpsI	GAGTC	3 cut(s)	1388, 2355, 2773
Ppu21I	YACGTR	3 cut(s)	2060, 2467, 3086
PpuMI	RGGWCCY	1 cut(s)	1489
PshBI	ATTAAT	1 cut(s)	1196
PsiI	TTATAA	3 cut(s)	353, 839, 2229
Psp5II	RGGWCCY	1 cut(s)	1489
Psp6I	CCWGG	2 cut(s)	1044, 2211
PspCI	CACGTG	1 cut(s)	3086
PspGI	CCWGG	2 cut(s)	1044, 2211
PspN4I	GGNNCC	9 cut(s)	116, 264, 346, 1038, 1100, 1285, 1857, 2007, 2280
PspPI	GGNCC	3 cut(s)	1489, 1683, 2881
PspPPI	RGGWCCY	1 cut(s)	1489
PsrI	GAACNNNNNNTAC	2 cut(s)	1563, 1595
PstI	CTGCAG	1 cut(s)	1770
PstNI	CAGNNNCTG	1 cut(s)	1142
PsuI	RGATCY	4 cut(s)	262, 542, 1234, 1558
RsaI	GTAC	5 cut(s)	190, 978, 2736, 2768, 3054
RsaNI	GTAC	5 cut(s)	189, 977, 2735, 2767, 3053
RseI	CAYNNNNRTG	3 cut(s)	786, 2147, 2601
SapI	GCTCTTC	2 cut(s)	2184, 3194
SaqAI	TTAA	6 cut(s)	947, 1196, 2322, 2454, 2670, 2762
Sau96I	GGNCC	3 cut(s)	1489, 1683, 2881
ScaI	AGTACT	1 cut(s)	2768
SchI	GAGTC	3 cut(s)	1389, 2356, 2773
ScrFI	CCNGG	3 cut(s)	1046, 2213, 2327
SduI	GDGCHC	4 cut(s)	19, 1412, 3040, 3142
SfcI	CTRYAG	2 cut(s)	336, 1766
SinI	GGWCC	1 cut(s)	1489
SmiMI	CAYNNNNRTG	3 cut(s)	786, 2147, 2601
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
SphI	GCATGC	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	2950
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	3 cut(s)	740, 1133, 3248
StuI	AGGCCT	1 cut(s)	2950
StyD4I	CCNGG	3 cut(s)	1044, 2211, 2325
StyI	CCWWGG	5 cut(s)	258, 471, 1356, 1883, 2033
TaiI	ACGT	9 cut(s)	438, 871, 2062, 2469, 2788, 3006, 3046, 3076, 3088
TaqI	TCGA	6 cut(s)	205, 2550, 2619, 2754, 3013, 3069
TatI	WGTACW	1 cut(s)	2766
TauI	GCSGC	5 cut(s)	8, 11, 215, 614, 1025
TfiI	GAWTC	6 cut(s)	202, 649, 1159, 1290, 2340, 3122
Tru1I	TTAA	6 cut(s)	947, 1196, 2322, 2454, 2670, 2762
Tru9I	TTAA	6 cut(s)	947, 1196, 2322, 2454, 2670, 2762
TseFI	GTSAC	3 cut(s)	1791, 1941, 2496
Tsp45I	GTSAC	3 cut(s)	1791, 1941, 2496
TspGWI	ACGGA	3 cut(s)	610, 1111, 2925
Vha464I	CTTAAG	1 cut(s)	946
VneI	GTGCAC	2 cut(s)	3036, 3138
VpaK11BI	GGWCC	1 cut(s)	1489
VspI	ATTAAT	1 cut(s)	1196
XapI	RAATTY	6 cut(s)	589, 1179, 1222, 1397, 1604, 1719
XceI	RCATGY	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2351, 3155
XmiI	GTMKAC	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	2805
XspI	CTAG	3 cut(s)	740, 1133, 3248
ZraI	GACGTC	1 cut(s)	3004
ZrmI	AGTACT	1 cut(s)	2768
Zsp2I	ATGCAT	3 cut(s)	250, 466, 2086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.