RLG00000014135

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010976
Physical Location & Seq
Reverse (-)
47848360 .. 47849562
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014135

Sequence Viewer

Length: 1203 bp
ATGGTGTACAAATGGAAGAAGAGACCTCAAGATTGGCAGAAAAGGAACAGCTTCTCATCTTGGTTACTCCCTGTATATGCTGGAGACAGCAGTTTTATGTCAAGCAAGAACTCCGTGGGAAAGAGCATGTACTCTTCCTCTATGGGCCTTGGCCGATTCTTCTCTTTCGCGGAGTTACAGGAAGCTACCAACAATTTCGACTCAAGCAAAATCATTGGTGTTGGTGGATTTGGCAATGTGTATCTTGGCGTCATTGATGATGGGATTAGTGTTGCTGTCAAGAGAGGAAATCCACAATCTGAACAGGGGATTACAGAGTTCCAAACAGAGATTCAAATGTTGTCAAAGCTCAGGCACAGGCATTTGGTCTCTCTAATTGGCTATTGTGATGAAAACCAAGAGATGATCTTGGTTTATGAGTTCGTGTCAAATGGACCATTCAGAGATCATCTGTGTGGTAAGAACTTGCCACCACTGTCATGGAAGCAAAGACTACAGATCTGCATTGGTGCTGCTCGCGGGCTTCACTACCTTCATACGGGTACAGCACAAGGCATCATTCACCGCGATGTGAAGACAACAAACATCCTTCTCGATGACCAGTTCACTGCCAAGGTTGCTGATTTCAGGTTGTCTAAAGATGCGCCAATGGGACAGAACCATGTGAGTACCGCTGTGAAGGGAAGCTTTGGGTACTTGGACCCTGAGTACTTTAGGAGGCAGCAACTGACAGACAAATCCGATGTCTACTCATTCGGAGTTGTCATGCTCGAGGCATTGTGTGCTAGGCCTGCTATAAATCCAGCACTTTCAAGAGAGCAAGTCAACTTGGCCGACTGGGGAATGCAGTGGAAGAGGAAAGGCTTGCTGGAAAAGATCGTCGACCCTCTCCTCATCGGAACCATCAACCCTGAATCCATGAAGAAGTTTGGTGAGGCTGCCGAGAAGTGCTTGTTAGAGCACGGTGTGGATAGGCCTACTATGGGAGATGTGCTGTGGAACTTGGAGTTTGCTCTGCAGCTTCAAGAGGCATTCCCAGAAGGAAAGGGCGAAGATGACAGCATTAATGCTACCCCCTCCGCTGATGCTGCATCTGCCTCTCCTACTGATGCTGCTGCTGCCGCTCCTACTGCCGCTGCTTCCGTTCCTCTCCCGGCTGCTATCCTGGAGGAAGAAGCCCCCCCCTACAGAACAGACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

401

Amino Acids

44.21

Weight (kDa)

5.82

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 67 - 268 3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 69 - 262 1.8e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21480 AT4G39110
fragaria_vesca FvH4_2g09700
malus_domestica MD05G1060800.v1.1 MD10G1068600.v1.1
prunus_persica Prupe.8G090600_v2.0.a1
pyrus_communis pycom10g05470
rosa_chinensis RchiOBHm_Chr6g0266011
rosa_laevigata RLG00000014135 RLG00000014136 RLG00000014138
rosa_multiflora Rmu_sc0000776.1_g000006
rosa_roxburghii Rroxscaffold_174G00435080 Rroxscaffold_7G00202100
rosa_rugosa Rorug06G0022500
rosa_samantha Rh6AG143700 Rh6BG144000 Rh6CG140700 Rh6DG128300
rosa_wichuraiana Rw6G012420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1124
AccI GTMKAC 2 cut(s) 747, 882
AccII CGCG 3 cut(s) 170, 519, 567
AciI CCGC 7 cut(s) 170, 519, 565, 672, 1080, 1122, 1134
AcoI YGGCCR 2 cut(s) 151, 831
AcyI GRCGYC 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 967
AfaI GTAC 6 cut(s) 8, 131, 544, 670, 695, 710
AfiI CCNNNNNNNGG 2 cut(s) 538, 983
AgsI TTSAA 3 cut(s) 335, 813, 1025
AjnI CCWGG 1 cut(s) 1164
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 5 cut(s) 51, 185, 349, 687, 1021
AluI AGCT 5 cut(s) 51, 185, 349, 687, 1021
Alw21I GWGCWC 1 cut(s) 963
Alw26I GTCTC 3 cut(s) 16, 78, 373
AlwNI CAGNNNCTG 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 5 cut(s) 145, 151, 788, 831, 974
ArsI GACNNNNNNTTYG 2 cut(s) 729, 761
AseI ATTAAT 1 cut(s) 1065
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 3 cut(s) 145, 434, 700
AsuC2I CCSGG 1 cut(s) 1154
AsuHPI GGTGA 2 cut(s) 554, 944
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 2 cut(s) 434, 700
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 963
BccI CCATC 2 cut(s) 254, 911
BciT130I CCWGG 1 cut(s) 1166
BcnI CCSGG 1 cut(s) 1154
BcoDI GTCTC 3 cut(s) 16, 78, 373
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 3 cut(s) 494, 1016, 1186
BglII AGATCT 1 cut(s) 498
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 2 cut(s) 1154, 1166
Bme18I GGWCC 2 cut(s) 434, 700
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 3 cut(s) 145, 434, 700
BmiI GGNNCC 2 cut(s) 702, 901
BmrFI CCNGG 2 cut(s) 1154, 1166
BmrI ACTGGG 1 cut(s) 847
BmsI GCATC 5 cut(s) 564, 631, 1075, 1099, 1100
BmuI ACTGGG 1 cut(s) 847
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 2 cut(s) 102, 1187
Bpu10I CCTNAGC 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 12, 187
BpuMI CCSGG 1 cut(s) 1154
BsaHI GRCGYC 1 cut(s) 249
BsaI GGTCTC 2 cut(s) 16, 373
BsaJI CCNNGG 3 cut(s) 114, 148, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 983
Bse1I ACTGG 2 cut(s) 601, 842
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 1166
BseDI CCNNGG 3 cut(s) 114, 148, 612
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 2 cut(s) 538, 983
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 364, 696
BseNI ACTGG 2 cut(s) 601, 842
BseRI GAGGAG 1 cut(s) 881
Bsh1236I CGCG 3 cut(s) 170, 519, 567
BshFI GGCC 5 cut(s) 147, 153, 790, 833, 976
BsiHKAI GWGCWC 1 cut(s) 963
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 1 cut(s) 1154
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 2 cut(s) 538, 983
BsmAI GTCTC 3 cut(s) 16, 78, 373
BsmFI GGGAC 1 cut(s) 666
BsmI GAATGC 2 cut(s) 849, 1031
BsnI GGCC 5 cut(s) 147, 153, 790, 833, 976
Bso31I GGTCTC 2 cut(s) 16, 373
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 963
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 4 cut(s) 405, 445, 498, 876
BspACI CCGC 7 cut(s) 170, 519, 565, 672, 1080, 1122, 1134
BspANI GGCC 5 cut(s) 147, 153, 790, 833, 976
BspCNI CTCAG 2 cut(s) 363, 697
BspFNI CGCG 3 cut(s) 170, 519, 567
BspLI GGNNCC 2 cut(s) 702, 901
BspMAI CTGCAG 1 cut(s) 1020
BspTNI GGTCTC 2 cut(s) 16, 373
BsrBI CCGCTC 1 cut(s) 1124
BsrDI GCAATG 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 6
BsrI ACTGG 2 cut(s) 601, 842
BssECI CCNNGG 3 cut(s) 114, 148, 612
BssMI GATC 4 cut(s) 405, 445, 498, 876
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 148, 612
Bst2UI CCWGG 1 cut(s) 1166
Bst4CI ACNGT 2 cut(s) 477, 965
Bst6I CTCTTC 3 cut(s) 14, 139, 848
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 782
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 4 cut(s) 517, 521, 792, 866
BstDEI CTNAG 2 cut(s) 350, 705
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 585
BstFNI CGCG 3 cut(s) 170, 519, 567
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 4 cut(s) 408, 448, 501, 879
BstMAI GTCTC 3 cut(s) 16, 78, 373
BstMBI GATC 4 cut(s) 405, 445, 498, 876
BstMWI GCNNNNNNNGC 8 cut(s) 617, 782, 791, 1088, 1094, 1118, 1121, 1130
BstNI CCWGG 1 cut(s) 1166
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 1152, 1164
BstSFI CTRYAG 3 cut(s) 494, 1016, 1186
BstUI CGCG 3 cut(s) 170, 519, 567
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 498
BsuRI GGCC 5 cut(s) 147, 153, 790, 833, 976
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 1 cut(s) 585
BtsI GCAGTG 2 cut(s) 606, 854
BtsIMutI CAGTG 3 cut(s) 473, 606, 854
Cac8I GCNNGC 4 cut(s) 517, 521, 792, 866
CaiI CAGNNNCTG 1 cut(s) 727
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 3 cut(s) 145, 434, 700
CseI GACGC 1 cut(s) 238
Csp6I GTAC 6 cut(s) 7, 130, 543, 669, 694, 709
CviAII CATG 5 cut(s) 127, 480, 662, 766, 919
CviQI GTAC 6 cut(s) 7, 130, 543, 669, 694, 709
DdeI CTNAG 2 cut(s) 350, 705
DpnI GATC 4 cut(s) 407, 447, 500, 878
DpnII GATC 4 cut(s) 405, 445, 498, 876
DraIII CACNNNGTG 1 cut(s) 967
EaeI YGGCCR 2 cut(s) 151, 831
Eam1104I CTCTTC 3 cut(s) 14, 139, 848
EarI CTCTTC 3 cut(s) 14, 139, 848
Eco130I CCWWGG 2 cut(s) 148, 612
Eco147I AGGCCT 2 cut(s) 790, 976
Eco31I GGTCTC 2 cut(s) 16, 373
Eco47I GGWCC 2 cut(s) 434, 700
Eco88I CYCGRG 1 cut(s) 770
EcoRII CCWGG 1 cut(s) 1164
EcoT14I CCWWGG 2 cut(s) 148, 612
ErhI CCWWGG 2 cut(s) 148, 612
FaeI CATG 5 cut(s) 130, 483, 665, 769, 922
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FaqI GGGAC 1 cut(s) 666
FatI CATG 5 cut(s) 126, 479, 661, 765, 918
FauI CCCGC 1 cut(s) 512
FblI GTMKAC 2 cut(s) 747, 882
FokI GGATG 1 cut(s) 572
FspBI CTAG 1 cut(s) 786
GlaI GCGC 1 cut(s) 645
GsuI CTGGAG 2 cut(s) 102, 1187
HaeIII GGCC 5 cut(s) 147, 153, 790, 833, 976
HapII CCGG 1 cut(s) 1154
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 646
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 5 cut(s) 130, 483, 665, 769, 922
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HincII GTYRAC 2 cut(s) 826, 883
HindII GTYRAC 2 cut(s) 826, 883
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 4 cut(s) 156, 200, 331, 914
HpaII CCGG 1 cut(s) 1154
HphI GGTGA 2 cut(s) 554, 944
Hpy166II GTNNAC 5 cut(s) 7, 606, 748, 826, 883
Hpy188I TCNGA 5 cut(s) 301, 443, 742, 758, 899
Hpy188III TCNNGA 5 cut(s) 29, 280, 593, 813, 1025
Hpy8I GTNNAC 5 cut(s) 7, 606, 748, 826, 883
Hpy99I CGWCG 1 cut(s) 884
HpyAV CCTTC 4 cut(s) 542, 599, 673, 1034
HpyCH4III ACNGT 2 cut(s) 477, 965
HpyCH4V TGCA 4 cut(s) 504, 847, 1018, 1091
HpyF10VI GCNNNNNNNGC 8 cut(s) 617, 782, 791, 1088, 1094, 1118, 1121, 1130
HpyF3I CTNAG 2 cut(s) 350, 705
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 5 cut(s) 130, 483, 665, 769, 922
HspAI GCGC 1 cut(s) 644
Kzo9I GATC 4 cut(s) 405, 445, 498, 876
LmnI GCTCC 1 cut(s) 1129
LweI GCATC 5 cut(s) 564, 631, 1075, 1099, 1100
MaeI CTAG 1 cut(s) 786
MaeIII GTNAC 2 cut(s) 63, 174
MalI GATC 4 cut(s) 407, 447, 500, 878
MbiI CCGCTC 1 cut(s) 1124
MboI GATC 4 cut(s) 405, 445, 498, 876
MboII GAAGA 9 cut(s) 28, 31, 126, 151, 586, 865, 934, 1064, 1184
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 963
MluCI AATT 2 cut(s) 193, 375
MlyI GAGTC 1 cut(s) 194
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 2 cut(s) 1065, 1201
MslI CAYNNNNRTG 3 cut(s) 453, 478, 567
MspA1I CMGCKG 3 cut(s) 674, 1082, 1136
MspI CCGG 1 cut(s) 1154
MspR9I CCNGG 2 cut(s) 1154, 1166
Mva1269I GAATGC 2 cut(s) 849, 1031
MvaI CCWGG 1 cut(s) 1166
MvnI CGCG 3 cut(s) 170, 519, 567
MwoI GCNNNNNNNGC 8 cut(s) 617, 782, 791, 1088, 1094, 1118, 1121, 1130
NciI CCSGG 1 cut(s) 1154
NdeII GATC 4 cut(s) 405, 445, 498, 876
NlaIII CATG 5 cut(s) 130, 483, 665, 769, 922
NlaIV GGNNCC 2 cut(s) 702, 901
NmeAIII GCCGAG 1 cut(s) 967
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 770
PceI AGGCCT 2 cut(s) 790, 976
PctI GAATGC 2 cut(s) 849, 1031
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 156, 331, 914
PfoI TCCNGGA 1 cut(s) 1164
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 1065
Psp6I CCWGG 1 cut(s) 1164
PspGI CCWGG 1 cut(s) 1164
PspN4I GGNNCC 2 cut(s) 702, 901
PspPI GGNCC 3 cut(s) 145, 434, 700
PspXI VCTCGAGB 1 cut(s) 770
PstI CTGCAG 1 cut(s) 1020
PstNI CAGNNNCTG 1 cut(s) 727
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 6 cut(s) 8, 131, 544, 670, 695, 710
RsaNI GTAC 6 cut(s) 7, 130, 543, 669, 694, 709
RseI CAYNNNNRTG 3 cut(s) 453, 478, 567
SalI GTCGAC 1 cut(s) 881
SaqAI TTAA 2 cut(s) 1065, 1201
Sau3AI GATC 4 cut(s) 405, 445, 498, 876
Sau96I GGNCC 3 cut(s) 145, 434, 700
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 1154, 1166
SduI GDGCHC 1 cut(s) 963
SetI ASST 9 cut(s) 28, 53, 187, 351, 534, 618, 632, 689, 1023
SfaNI GCATC 5 cut(s) 564, 631, 1075, 1099, 1100
SfcI CTRYAG 3 cut(s) 494, 1016, 1186
Sfr274I CTCGAG 1 cut(s) 770
SinI GGWCC 2 cut(s) 434, 700
SlaI CTCGAG 1 cut(s) 770
SmiMI CAYNNNNRTG 3 cut(s) 453, 478, 567
SmlI CTYRAG 3 cut(s) 27, 202, 770
SmoI CTYRAG 3 cut(s) 27, 202, 770
Sse9I AATT 2 cut(s) 193, 375
SseBI AGGCCT 2 cut(s) 790, 976
SsiI CCGC 7 cut(s) 170, 519, 565, 672, 1080, 1122, 1134
SspMI CTAG 1 cut(s) 786
StuI AGGCCT 2 cut(s) 790, 976
StyD4I CCNGG 2 cut(s) 1152, 1164
StyI CCWWGG 2 cut(s) 148, 612
TaaI ACNGT 2 cut(s) 477, 965
TaqI TCGA 4 cut(s) 198, 594, 771, 882
TasI AATT 2 cut(s) 193, 375
TatI WGTACW 3 cut(s) 6, 129, 708
TauI GCSGC 2 cut(s) 1124, 1136
TfiI GAWTC 3 cut(s) 156, 331, 914
Tru1I TTAA 2 cut(s) 1065, 1201
Tru9I TTAA 2 cut(s) 1065, 1201
TscAI CASTG 3 cut(s) 480, 613, 854
TspDTI ATGAA 3 cut(s) 405, 524, 935
TspGWI ACGGA 2 cut(s) 103, 1132
TspRI CASTG 3 cut(s) 480, 613, 854
VpaK11BI GGWCC 2 cut(s) 434, 700
VspI ATTAAT 1 cut(s) 1065
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XhoI CTCGAG 1 cut(s) 770
XmiI GTMKAC 2 cut(s) 747, 882
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 786
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.