Rorug06G0022500

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010976
Physical Location & Seq
Reverse (-)
2827351 .. 2828383
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0022500.1

Sequence Viewer

Length: 525 bp
ATGGCCGCTCAAAACCCTAAGGTGTTCTTCGACATGACGATCGGAGGCCAGCCGGCCGGCCGCATCGTCATGGAGCTCTACGCCGACACCACCCCTCGCACCGCCGAGAACTTCCGTGCTCTCTGCACCGGTGAGAAGGGCGTCGGCCGCGCCGGCAAGCCCCTCCACTACAAGGGATCGTCCTTCCACCGTGTGATCCCCGGCTTCATGTGCCAGGGAGGTGACTTCACCGCCGGAAACGGCACCGGAGGCGAGTCGATCTACGGCGCCAAGTTCGCCGACGAGAACTTTGTCAAGAAGCACACCGGCCCCGGCATCCTCTCCATGGCGAATGCCGGCCCCGGCACCAACGGATCTCAGTTCTTCGTCTGTACTGCTAAGACCGAGTGGCTCGACGGCAAGCACGTCGTGTTCGGCCAGGTCGTCGAGGGTCTCGACGTCGTCAAGAACATCGAGAAGGTTGGGTCTAGCTCTGGAAGGACCGCCAAGCCTGTTGTGGTCGCCGACTGTGGCCAGCTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

174

Amino Acids

18.25

Weight (kDa)

8.69

Isoelectric Point (pI)

17.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 9 - 171 1.8e-49 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21480 AT4G39110
fragaria_vesca FvH4_2g09700
malus_domestica MD05G1060800.v1.1 MD10G1068600.v1.1
prunus_persica Prupe.8G090600_v2.0.a1
pyrus_communis pycom10g05470
rosa_chinensis RchiOBHm_Chr6g0266011
rosa_laevigata RLG00000014135 RLG00000014136 RLG00000014138
rosa_multiflora Rmu_sc0000776.1_g000006
rosa_roxburghii Rroxscaffold_174G00435080 Rroxscaffold_7G00202100
rosa_rugosa Rorug06G0022500
rosa_samantha Rh6AG143700 Rh6BG144000 Rh6CG140700 Rh6DG128300
rosa_wichuraiana Rw6G012420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 441
AccB1I GGYRCC 3 cut(s) 242, 266, 344
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 1 cut(s) 150
AciI CCGC 6 cut(s) 6, 61, 102, 148, 231, 483
AclWI GGATC 3 cut(s) 184, 190, 361
AcoI YGGCCR 6 cut(s) 3, 54, 58, 145, 415, 511
AcyI GRCGYC 3 cut(s) 141, 267, 438
AdeI CACNNNGTG 2 cut(s) 193, 409
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 2 cut(s) 172, 325
AgeI ACCGGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 2 cut(s) 213, 417
AluBI AGCT 3 cut(s) 76, 471, 517
AluI AGCT 3 cut(s) 76, 471, 517
Alw21I GWGCWC 2 cut(s) 78, 121
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 3 cut(s) 184, 190, 361
AoxI GGCC 9 cut(s) 3, 46, 54, 58, 145, 307, 337, 415, 511
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 2 cut(s) 152, 269
AspS9I GGNCC 3 cut(s) 308, 338, 480
AsuC2I CCSGG 3 cut(s) 201, 312, 342
AsuHPI GGTGA 3 cut(s) 143, 220, 233
AvaII GGWCC 1 cut(s) 480
AxyI CCTNAGG 1 cut(s) 18
BalI TGGCCA 1 cut(s) 513
BanI GGYRCC 3 cut(s) 242, 266, 344
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 78, 121
BceAI ACGGC 3 cut(s) 256, 280, 412
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 215, 419
BcnI CCSGG 3 cut(s) 201, 312, 342
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 3 cut(s) 6, 61, 148
BlsI GCNGC 3 cut(s) 7, 62, 149
Bme1390I CCNGG 5 cut(s) 201, 215, 312, 342, 419
Bme18I GGWCC 1 cut(s) 480
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 3 cut(s) 308, 338, 480
BmiI GGNNCC 5 cut(s) 244, 268, 310, 340, 346
BmrFI CCNGG 5 cut(s) 201, 215, 312, 342, 419
BmsI GCATC 2 cut(s) 72, 324
BpuMI CCSGG 3 cut(s) 201, 312, 342
BsaHI GRCGYC 3 cut(s) 141, 267, 438
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 5 cut(s) 199, 214, 310, 324, 340
BsaWI WCCGGW 2 cut(s) 128, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 325
Bse118I RCCGGY 6 cut(s) 52, 56, 128, 152, 305, 335
Bse21I CCTNAGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 215, 419
BseDI CCNNGG 5 cut(s) 199, 214, 310, 324, 340
BseGI GGATG 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 172, 325
BseMII CTCAG 1 cut(s) 371
BseX3I CGGCCG 3 cut(s) 54, 58, 145
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 4 cut(s) 42, 57, 61, 148
BshFI GGCC 9 cut(s) 5, 48, 56, 60, 147, 309, 339, 417, 513
BshNI GGYRCC 3 cut(s) 242, 266, 344
BshTI ACCGGT 1 cut(s) 128
BsiEI CGRYCG 4 cut(s) 42, 57, 61, 148
BsiHKAI GWGCWC 2 cut(s) 78, 121
BslI CCNNNNNNNGG 2 cut(s) 172, 325
BsmAI GTCTC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 9 cut(s) 5, 48, 56, 60, 147, 309, 339, 417, 513
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 78, 121
Bsp143I GATC 5 cut(s) 39, 176, 195, 258, 353
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 6 cut(s) 6, 61, 102, 148, 231, 483
BspANI GGCC 9 cut(s) 5, 48, 56, 60, 147, 309, 339, 417, 513
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 5 cut(s) 244, 268, 310, 340, 346
BspPI GGATC 3 cut(s) 184, 190, 361
BspT107I GGYRCC 3 cut(s) 242, 266, 344
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 8
BsrFI RCCGGY 6 cut(s) 52, 56, 128, 152, 305, 335
BssAI RCCGGY 6 cut(s) 52, 56, 128, 152, 305, 335
BssECI CCNNGG 5 cut(s) 199, 214, 310, 324, 340
BssMI GATC 5 cut(s) 39, 176, 195, 258, 353
BssNI GRCGYC 3 cut(s) 141, 267, 438
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 215, 419
Bst4CI ACNGT 2 cut(s) 191, 509
BstACI GRCGYC 3 cut(s) 141, 267, 438
BstC8I GCNNGC 8 cut(s) 50, 54, 58, 154, 158, 337, 401, 515
BstDEI CTNAG 4 cut(s) 18, 357, 378, 522
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 152, 269
BstKTI GATC 5 cut(s) 42, 179, 198, 261, 356
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 5 cut(s) 39, 176, 195, 258, 353
BstMCI CGRYCG 4 cut(s) 42, 57, 61, 148
BstMWI GCNNNNNNNGC 5 cut(s) 147, 153, 210, 249, 275
BstNI CCWGG 2 cut(s) 215, 419
BstSCI CCNGG 5 cut(s) 199, 213, 310, 340, 417
BstUI CGCG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BstZI CGGCCG 3 cut(s) 54, 58, 145
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 9 cut(s) 5, 48, 56, 60, 147, 309, 339, 417, 513
BtgI CCRYGG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 315
Cac8I GCNNGC 8 cut(s) 50, 54, 58, 154, 158, 337, 401, 515
CfoI GCGC 2 cut(s) 152, 269
Cfr10I RCCGGY 6 cut(s) 52, 56, 128, 152, 305, 335
Cfr13I GGNCC 3 cut(s) 308, 338, 480
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 372
CspAI ACCGGT 1 cut(s) 128
CviAII CATG 4 cut(s) 34, 70, 208, 325
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 4 cut(s) 18, 357, 378, 522
DinI GGCGCC 1 cut(s) 268
DpnI GATC 5 cut(s) 41, 178, 197, 260, 355
DpnII GATC 5 cut(s) 39, 176, 195, 258, 353
DraIII CACNNNGTG 2 cut(s) 193, 409
EaeI YGGCCR 6 cut(s) 3, 54, 58, 145, 415, 511
EagI CGGCCG 3 cut(s) 54, 58, 145
Ecl136II GAGCTC 1 cut(s) 76
EclXI CGGCCG 3 cut(s) 54, 58, 145
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 480
Eco52I CGGCCG 3 cut(s) 54, 58, 145
Eco53kI GAGCTC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 213, 417
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 78
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 4 cut(s) 37, 73, 211, 328
FaiI YATR 4 cut(s) 35, 71, 209, 326
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 4 cut(s) 33, 69, 207, 324
Fnu4HI GCNGC 3 cut(s) 6, 61, 148
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 78
FseI GGCCGGCC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 6, 61, 148
FspBI CTAG 1 cut(s) 468
GlaI GCGC 2 cut(s) 151, 268
GluI GCNGC 3 cut(s) 6, 61, 148
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 9 cut(s) 5, 48, 56, 60, 147, 309, 339, 417, 513
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 152, 269
Hin1I GRCGYC 3 cut(s) 141, 267, 438
Hin1II CATG 4 cut(s) 37, 73, 211, 328
Hin6I GCGC 2 cut(s) 150, 267
HinP1I GCGC 2 cut(s) 150, 267
HinfI GANTC 1 cut(s) 254
HphI GGTGA 3 cut(s) 143, 220, 233
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 5 cut(s) 295, 434, 445, 454, 474
Hpy99I CGWCG 7 cut(s) 146, 284, 398, 410, 428, 440, 443
HpyAV CCTTC 4 cut(s) 130, 193, 451, 471
HpyCH4III ACNGT 2 cut(s) 191, 509
HpyCH4IV ACGT 2 cut(s) 405, 438
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 153, 210, 249, 275
HpyF3I CTNAG 4 cut(s) 18, 357, 378, 522
HpySE526I ACGT 2 cut(s) 405, 438
Hsp92I GRCGYC 3 cut(s) 141, 267, 438
Hsp92II CATG 4 cut(s) 37, 73, 211, 328
HspAI GCGC 2 cut(s) 150, 267
KasI GGCGCC 1 cut(s) 266
KroI GCCGGC 4 cut(s) 52, 56, 152, 335
KroNI GCCGGC 4 cut(s) 54, 58, 154, 337
Kzo9I GATC 5 cut(s) 39, 176, 195, 258, 353
LmnI GCTCC 1 cut(s) 73
LweI GCATC 2 cut(s) 72, 324
MaeI CTAG 1 cut(s) 468
MaeII ACGT 2 cut(s) 405, 438
MaeIII GTNAC 1 cut(s) 221
MalI GATC 5 cut(s) 41, 178, 197, 260, 355
MbiI CCGCTC 1 cut(s) 8
MboI GATC 5 cut(s) 39, 176, 195, 258, 353
MboII GAAGA 2 cut(s) 19, 355
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 78, 121
MlsI TGGCCA 1 cut(s) 513
MluNI TGGCCA 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 7 cut(s) 38, 105, 173, 212, 242, 329, 421
Mox20I TGGCCA 1 cut(s) 513
MroNI GCCGGC 4 cut(s) 52, 56, 152, 335
MscI TGGCCA 1 cut(s) 513
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 513
MspR9I CCNGG 5 cut(s) 201, 215, 312, 342, 419
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 215, 419
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 5 cut(s) 147, 153, 210, 249, 275
NaeI GCCGGC 4 cut(s) 54, 58, 154, 337
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 3 cut(s) 201, 312, 342
NcoI CCATGG 1 cut(s) 324
NdeII GATC 5 cut(s) 39, 176, 195, 258, 353
NgoMIV GCCGGC 4 cut(s) 52, 56, 152, 335
NlaIII CATG 4 cut(s) 37, 73, 211, 328
NlaIV GGNNCC 5 cut(s) 244, 268, 310, 340, 346
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 3 cut(s) 402, 420, 432
PctI GAATGC 1 cut(s) 337
PdiI GCCGGC 4 cut(s) 54, 58, 154, 337
PflFI GACNNNGTC 1 cut(s) 440
PinAI ACCGGT 1 cut(s) 128
PkrI GCNGC 3 cut(s) 7, 62, 149
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 1 cut(s) 262
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 213, 417
PspGI CCWGG 2 cut(s) 213, 417
PspN4I GGNNCC 5 cut(s) 244, 268, 310, 340, 346
PspPI GGNCC 3 cut(s) 308, 338, 480
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 440
PvuI CGATCG 1 cut(s) 42
RigI GGCCGGCC 1 cut(s) 60
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 78
SatI GCNGC 3 cut(s) 6, 61, 148
Sau3AI GATC 5 cut(s) 39, 176, 195, 258, 353
Sau96I GGNCC 3 cut(s) 308, 338, 480
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 5 cut(s) 201, 215, 312, 342, 419
SduI GDGCHC 2 cut(s) 78, 121
SetI ASST 9 cut(s) 24, 78, 223, 408, 423, 441, 462, 473, 519
SfaNI GCATC 2 cut(s) 72, 324
SfoI GGCGCC 1 cut(s) 268
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 68
SsiI CCGC 6 cut(s) 6, 61, 102, 148, 231, 483
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 1 cut(s) 468
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 5 cut(s) 199, 213, 310, 340, 417
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 191, 509
TaiI ACGT 2 cut(s) 408, 441
TaqI TCGA 6 cut(s) 30, 257, 393, 426, 435, 453
TaqII GACCGA 1 cut(s) 398
TatI WGTACW 1 cut(s) 371
TauI GCSGC 3 cut(s) 8, 63, 150
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 2 cut(s) 104, 366
Tth111I GACNNNGTC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XspI CTAG 1 cut(s) 468
ZraI GACGTC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.