RLG00000014136

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010976
Physical Location & Seq
Reverse (-)
47849592 .. 47851220
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014136

Sequence Viewer

Length: 945 bp
ATGGGATTCATAATGACCCTCAAGACTGATTCACAATCATCGCAACATTTGAAAGCAAATGACGATAATGAAGTGTCTGATGACAAGGCAGATAAGGCAACTTTCAATGTCATGACAGATAAGTACACTTTGCTCCAAAGCTTCAATTTCAATGAGGCCGCTAACAACAACACCATCAAAGTTGTTCGCAAGGATGCAATTGAGGTGGTTTCAGCTGCTGACTATCTCATCTCGGACACGGCTAACAGCCTTCAGCCAGTGAGCCAGTTCCAGGGGTTGTCCAAATTTGGATACGAATGTATGTACAGGATTAACGTGGGCGGACCTCTAGTGACCCCGGTCAATGACACATTAGGACGGTTCTGGTTGCCGGACGAGCCATACATTAAGTCCAAGAACATGGCCCAAAGTGCCAAGGTTGAAACCAAAACTATCAAGTATCCTCAAGGGCTCACACCCCAAATAGCTCCACCAATAGTTTATGCACCTTCTGCGCATATAGAGGATGCAGGTGTCAGCAATCAAAAGTTCAATGTGACATGGGACTTTCAGGCTGAAAATGCCTATGGTTACTTGATCCGGTTGCATTTCTGCGACATTGTGGGCAAAACACTTGGTAATCTTTACTTCAATGTCAACATCAATGGGCAGATGGCAATACGTGATTTGGATTTGTCACAAACCTTGAACGGTTTGGCAATTCCATTCTATGAGGACATTGTGGTCAACTCTTCATTGATAAAAGACGCGCTTTCAATCCAGATTGGTCCGTCTAAATTGGGGAGTGGTGCTCAGGATGCCATTCTAAATGGTTTGGAGGTTATGAAAATAGCAATTCTGTTAATAGTTTGGATGGAGAGTTCGGAGTCGATGGAAAAGATTCAAAAGATAGCAGCGGAAGTGGGGTTCACAAGGGAGCGGTTGCAGCAGTCGGATTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like Pkinase_Tyr

Protein Analysis

315

Amino Acids

34.77

Weight (kDa)

4.93

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 100 - 277 2.3e-13 Malectin-like domain
Malectin PF11721 182 - 255 1.1e-07 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010976)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21480 AT4G39110
fragaria_vesca FvH4_2g09700
malus_domestica MD05G1060800.v1.1 MD10G1068600.v1.1
prunus_persica Prupe.8G090600_v2.0.a1
pyrus_communis pycom10g05470
rosa_chinensis RchiOBHm_Chr6g0266011
rosa_laevigata RLG00000014135 RLG00000014136 RLG00000014138
rosa_multiflora Rmu_sc0000776.1_g000006
rosa_roxburghii Rroxscaffold_174G00435080 Rroxscaffold_7G00202100
rosa_rugosa Rorug06G0022500
rosa_samantha Rh6AG143700 Rh6BG144000 Rh6CG140700 Rh6DG128300
rosa_wichuraiana Rw6G012420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 500
AasI GACNNNNNNGTC 1 cut(s) 722
Acc16I TGCGCA 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 919
AccII CGCG 1 cut(s) 749
AciI CCGC 4 cut(s) 159, 321, 896, 919
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 2 cut(s) 125, 305
AfiI CCNNNNNNNGG 1 cut(s) 271
AjnI CCWGG 1 cut(s) 270
AloI GAACNNNNNNTCC 4 cut(s) 844, 876, 890, 922
AluBI AGCT 3 cut(s) 141, 215, 467
AluI AGCT 3 cut(s) 141, 215, 467
Alw21I GWGCWC 1 cut(s) 793
AlwI GGATC 1 cut(s) 571
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 2 cut(s) 156, 402
ApeKI GCWGC 3 cut(s) 215, 893, 925
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 879
AspLEI GCGC 2 cut(s) 496, 751
AspS9I GGNCC 3 cut(s) 323, 403, 767
AsuC2I CCSGG 1 cut(s) 338
AvaII GGWCC 2 cut(s) 323, 767
BaeI ACNNNNGTAYC 2 cut(s) 283, 316
BanII GRGCYC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 3 cut(s) 202, 905, 937
BccI CCATC 4 cut(s) 182, 646, 847, 865
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 2 cut(s) 284, 450
BcnI CCSGG 1 cut(s) 338
BfaI CTAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 500
BfuI GTATCC 2 cut(s) 284, 450
BisI GCNGC 4 cut(s) 159, 216, 894, 926
BlsI GCNGC 4 cut(s) 160, 217, 895, 927
Bme1390I CCNGG 2 cut(s) 272, 338
Bme18I GGWCC 2 cut(s) 323, 767
BmgT120I GGNCC 3 cut(s) 323, 403, 767
BmrFI CCNGG 2 cut(s) 272, 338
BmsI GCATC 3 cut(s) 184, 496, 787
BoxI GACNNNNGTC 1 cut(s) 338
BplI GAGNNNNNCTC 2 cut(s) 775, 807
Bpu10I CCTNAGC 1 cut(s) 792
BpuEI CTTGAG 2 cut(s) 5, 429
BpuMI CCSGG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 271, 336, 414
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 257, 265
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 271, 336, 414
BseGI GGATG 4 cut(s) 199, 511, 802, 858
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 2 cut(s) 257, 265
BseXI GCAGC 3 cut(s) 202, 905, 937
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 2 cut(s) 158, 404
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 3 cut(s) 338, 371, 580
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 2 cut(s) 158, 404
Bsp1286I GDGCHC 2 cut(s) 453, 793
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 1 cut(s) 576
BspACI CCGC 4 cut(s) 159, 321, 896, 919
BspANI GGCC 2 cut(s) 158, 404
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 1 cut(s) 749
BspHI TCATGA 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 500
BspPI GGATC 1 cut(s) 571
BsrBI CCGCTC 1 cut(s) 919
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 2 cut(s) 257, 265
BssECI CCNNGG 3 cut(s) 271, 336, 414
BssMI GATC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 360, 692
Bst6I CTCTTC 1 cut(s) 736
BstAPI GCANNNNNTGC 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 662
BstDEI CTNAG 1 cut(s) 792
BstF5I GGATG 4 cut(s) 199, 511, 802, 858
BstFNI CGCG 1 cut(s) 749
BstHHI GCGC 2 cut(s) 496, 751
BstKTI GATC 1 cut(s) 579
BstMBI GATC 1 cut(s) 576
BstMWI GCNNNNNNNGC 7 cut(s) 95, 376, 410, 491, 560, 797, 925
BstNI CCWGG 1 cut(s) 272
BstPAI GACNNNNGTC 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 270, 336
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 3 cut(s) 202, 905, 937
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuI GTATCC 2 cut(s) 284, 450
BsuRI GGCC 2 cut(s) 158, 404
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 4 cut(s) 199, 511, 802, 858
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 500
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 111
CfoI GCGC 2 cut(s) 496, 751
Cfr13I GGNCC 3 cut(s) 323, 403, 767
CseI GACGC 1 cut(s) 755
Csp6I GTAC 2 cut(s) 124, 304
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 3 cut(s) 112, 400, 540
CviQI GTAC 2 cut(s) 124, 304
DdeI CTNAG 1 cut(s) 792
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
EciI GGCGGA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 453
Eco47I GGWCC 2 cut(s) 323, 767
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 3 cut(s) 115, 403, 543
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 111, 399, 539
Fnu4HI GCNGC 4 cut(s) 159, 216, 894, 926
FokI GGATG 4 cut(s) 206, 518, 809, 865
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 4 cut(s) 159, 216, 894, 926
FspBI CTAG 1 cut(s) 329
FspI TGCGCA 1 cut(s) 495
GlaI GCGC 2 cut(s) 495, 750
GluI GCNGC 4 cut(s) 159, 216, 894, 926
HaeIII GGCC 2 cut(s) 158, 404
HapII CCGG 3 cut(s) 338, 371, 580
HgaI GACGC 1 cut(s) 755
HhaI GCGC 2 cut(s) 496, 751
Hin1II CATG 3 cut(s) 115, 403, 543
Hin6I GCGC 2 cut(s) 494, 749
HinP1I GCGC 2 cut(s) 494, 749
HincII GTYRAC 2 cut(s) 637, 727
HindII GTYRAC 2 cut(s) 637, 727
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 4 cut(s) 6, 29, 866, 880
HpaII CCGG 3 cut(s) 338, 371, 580
Hpy166II GTNNAC 4 cut(s) 126, 637, 727, 909
Hpy188I TCNGA 4 cut(s) 79, 235, 865, 934
Hpy188III TCNNGA 4 cut(s) 22, 112, 760, 794
Hpy8I GTNNAC 4 cut(s) 126, 637, 727, 909
HpyAV CCTTC 2 cut(s) 260, 498
HpyCH4III ACNGT 2 cut(s) 360, 692
HpyCH4IV ACGT 2 cut(s) 315, 661
HpyCH4V TGCA 5 cut(s) 197, 485, 509, 586, 925
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 376, 410, 491, 560, 797, 925
HpyF3I CTNAG 1 cut(s) 792
HpySE526I ACGT 2 cut(s) 315, 661
Hsp92II CATG 3 cut(s) 115, 403, 543
HspAI GCGC 2 cut(s) 494, 749
Kzo9I GATC 1 cut(s) 576
LmnI GCTCC 3 cut(s) 138, 472, 916
Lsp1109I GCAGC 3 cut(s) 202, 905, 937
LweI GCATC 3 cut(s) 184, 496, 787
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 315, 661
MaeIII GTNAC 4 cut(s) 331, 535, 569, 675
MalI GATC 1 cut(s) 578
MbiI CCGCTC 1 cut(s) 919
MboI GATC 1 cut(s) 576
MboII GAAGA 1 cut(s) 723
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 453, 793
MluCI AATT 6 cut(s) 145, 198, 284, 699, 776, 834
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 912
MnlI CCTC 8 cut(s) 29, 148, 196, 336, 453, 496, 706, 811
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 3 cut(s) 312, 387, 842
MspA1I CMGCKG 2 cut(s) 215, 896
MspI CCGG 3 cut(s) 338, 371, 580
MspR9I CCNGG 2 cut(s) 272, 338
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 7 cut(s) 95, 376, 410, 491, 560, 797, 925
NciI CCSGG 1 cut(s) 338
NdeII GATC 1 cut(s) 576
NlaIII CATG 3 cut(s) 115, 403, 543
NmuCI GTSAC 3 cut(s) 331, 535, 675
NsbI TGCGCA 1 cut(s) 495
PagI TCATGA 1 cut(s) 111
PaqCI CACCTGC 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 3 cut(s) 6, 29, 880
PkrI GCNGC 4 cut(s) 160, 217, 895, 927
PleI GAGTC 1 cut(s) 874
PpsI GAGTC 1 cut(s) 874
Ppu21I YACGTR 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspPI GGNCC 3 cut(s) 323, 403, 767
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 2 cut(s) 125, 305
RsaNI GTAC 2 cut(s) 124, 304
SaqAI TTAA 3 cut(s) 312, 387, 842
SatI GCNGC 4 cut(s) 159, 216, 894, 926
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 3 cut(s) 323, 403, 767
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 2 cut(s) 272, 338
SduI GDGCHC 2 cut(s) 453, 793
SfaNI GCATC 3 cut(s) 184, 496, 787
SinI GGWCC 2 cut(s) 323, 767
SmlI CTYRAG 2 cut(s) 20, 444
SmoI CTYRAG 2 cut(s) 20, 444
Sse9I AATT 6 cut(s) 145, 198, 284, 699, 776, 834
SsiI CCGC 4 cut(s) 159, 321, 896, 919
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 270, 336
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 360, 692
TaiI ACGT 2 cut(s) 318, 664
TaqI TCGA 1 cut(s) 869
TasI AATT 6 cut(s) 145, 198, 284, 699, 776, 834
TatI WGTACW 2 cut(s) 123, 303
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 3 cut(s) 6, 29, 880
Tru1I TTAA 3 cut(s) 312, 387, 842
Tru9I TTAA 3 cut(s) 312, 387, 842
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 3 cut(s) 331, 535, 675
TseI GCWGC 3 cut(s) 215, 893, 925
Tsp45I GTSAC 3 cut(s) 331, 535, 675
TspDTI ATGAA 3 cut(s) 84, 723, 839
TspGWI ACGGA 1 cut(s) 759
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 2 cut(s) 323, 767
XapI RAATTY 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 879
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.