Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Reverse (-)

67936740 .. 67940429

Gene Structure 3690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015568

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCCATCAGAGGCGTCGATTTCAAGCGGATTTCTGATAGAGTAATTGTTGCGATTAATTGGAAGCGGTACCATACTTGTACATATCCGTTGTATATATGGATTGTGGTTTTGTTTGGAATACTTTTGCTTGTGCATGTACCAAATTTGGTTACTTATCCTGGTTATACTCCAATCCATACGGAATCAATTGAGGATGCCTACCAAGCACTTCCTGGTGGAGAGCAAATCTGTCCTGAGAGGAATGCCAACTTATTTTCCAGAATATTATTTTCATGGGTGAGTCCCTTTATGAAGCTTGGCGATCAAAGACCTCTTATGGAGAAGGATATATGGAAACTGGATACTTGGAATCGGACTGAAACGCTGAGCAATAAGTTCCAAAAATGTTGGGCTGATGAAAATCGAAAGCCTAAACCATGGCTCTTGATAGCCTTAAACTGTAGCCTAGGGAGAAGCATATGCTCTATAGTATTTCTCCTCTTTATTACTTTGTATGTGAGGCGCATTCAGGAAGCCATTTTCGACCTTCCGTTCTCAAAGCTAGTTCTGCACAATTGTGCAATGCAGGTTGATGCTACAAACCGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGTTTCATACTTTGATGTGCCTGGAGGAGCTGGGGTTGTTCTTCCATGATAGAAAGCAGCCTGCCCTTTGCATGCTGTTTAGTATTCCTTATGGCAAAGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

243

Amino Acids

28.12

Weight (kDa)

8.85

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AciI	CCGC	2 cut(s)	28, 67
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	3 cut(s)	71, 82, 141
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	160, 214, 642
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	3 cut(s)	298, 544, 652
AluI	AGCT	3 cut(s)	298, 544, 652
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	1 cut(s)	145
AseI	ATTAAT	1 cut(s)	57
Asp718I	GGTACC	1 cut(s)	69
AspA2I	CCTAGG	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	292
AvrII	CCTAGG	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	1 cut(s)	14
BciT130I	CCWGG	3 cut(s)	162, 216, 644
BciVI	GTATCC	1 cut(s)	337
BfaI	CTAG	4 cut(s)	449, 545, 600, 727
BfmI	CTRYAG	2 cut(s)	442, 468
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	680
BlnI	CCTAGG	1 cut(s)	448
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	681
Bme1390I	CCNGG	3 cut(s)	162, 216, 644
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	3 cut(s)	162, 216, 644
BmsI	GCATC	2 cut(s)	187, 565
BpmI	CTGGAG	1 cut(s)	665
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	419, 448, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bse1I	ACTGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	162, 216, 644
BseDI	CCNNGG	3 cut(s)	419, 448, 586
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	228, 359
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	2 cut(s)	470, 662
BseXI	GCAGC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	536
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	2 cut(s)	250, 507
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	368
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	2 cut(s)	28, 67
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	229, 360
BspLI	GGNNCC	1 cut(s)	71
BspMI	ACCTGC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	419, 448, 586
BssMI	GATC	1 cut(s)	304
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	419, 448
Bst2UI	CCWGG	3 cut(s)	162, 216, 644
Bst4CI	ACNGT	2 cut(s)	443, 587
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	684, 695
BstDEI	CTNAG	2 cut(s)	237, 368
BstDSI	CCRYGG	2 cut(s)	419, 586
BstF5I	GGATG	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 550, 723
BstNI	CCWGG	3 cut(s)	162, 216, 644
BstNSI	RCATGY	2 cut(s)	140, 697
BstSCI	CCNGG	3 cut(s)	160, 214, 642
BstSFI	CTRYAG	2 cut(s)	442, 468
BstV1I	GCAGC	1 cut(s)	691
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	419, 586
BtsCI	GGATG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	684, 695
CfoI	GCGC	1 cut(s)	507
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	70, 81, 140
CviAII	CATG	5 cut(s)	137, 276, 420, 668, 694
CviQI	GTAC	3 cut(s)	70, 81, 140
DdeI	CTNAG	2 cut(s)	237, 368
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	419, 448
EcoRII	CCWGG	3 cut(s)	160, 214, 642
EcoT14I	CCWWGG	2 cut(s)	419, 448
ErhI	CCWWGG	2 cut(s)	419, 448
FaeI	CATG	5 cut(s)	140, 279, 423, 671, 697
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	136, 275, 419, 667, 693
FauNDI	CATATG	1 cut(s)	461
Fnu4HI	GCNGC	1 cut(s)	680
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	680
FspBI	CTAG	4 cut(s)	449, 545, 600, 727
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	1 cut(s)	680
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	5 cut(s)	140, 279, 423, 671, 697
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	185, 283, 352, 603
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	11, 37, 357
Hpy188III	TCNNGA	4 cut(s)	236, 261, 427, 512
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	319, 539
HpyCH4III	ACNGT	2 cut(s)	443, 587
HpyCH4V	TGCA	5 cut(s)	136, 553, 563, 568, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 550, 723
HpyF3I	CTNAG	2 cut(s)	237, 368
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	140, 279, 423, 671, 697
HspAI	GCGC	1 cut(s)	505
KpnI	GGTACC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	2 cut(s)	187, 565
MaeI	CTAG	4 cut(s)	449, 545, 600, 727
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	1 cut(s)	655
MfeI	CAATTG	2 cut(s)	189, 556
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	45, 58, 145, 189, 556, 594
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	5, 187, 234, 324, 491, 495, 584, 640
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	57, 437
MslI	CAYNNNNRTG	2 cut(s)	558, 618
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	162, 216, 644
MunI	CAATTG	2 cut(s)	189, 556
Mva1269I	GAATGC	2 cut(s)	250, 507
MvaI	CCWGG	3 cut(s)	162, 216, 644
MwoI	GCNNNNNNNGC	3 cut(s)	206, 550, 723
NcoI	CCATGG	1 cut(s)	419
NdeI	CATATG	1 cut(s)	461
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	5 cut(s)	140, 279, 423, 671, 697
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	2 cut(s)	140, 697
OliI	CACNNNNGTG	1 cut(s)	558
PaeI	GCATGC	1 cut(s)	697
PctI	GAATGC	2 cut(s)	250, 507
PfeI	GAWTC	3 cut(s)	185, 352, 603
PkrI	GCNGC	1 cut(s)	681
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PshBI	ATTAAT	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	160, 214, 642
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	3 cut(s)	160, 214, 642
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	3 cut(s)	71, 82, 141
RsaNI	GTAC	3 cut(s)	70, 81, 140
RseI	CAYNNNNRTG	2 cut(s)	558, 618
SaqAI	TTAA	2 cut(s)	57, 437
SatI	GCNGC	1 cut(s)	680
Sau3AI	GATC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	3 cut(s)	162, 216, 644
SetI	ASST	6 cut(s)	300, 316, 531, 546, 573, 654
SfaNI	GCATC	2 cut(s)	187, 565
SfcI	CTRYAG	2 cut(s)	442, 468
SmiMI	CAYNNNNRTG	2 cut(s)	558, 618
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	6 cut(s)	45, 58, 145, 189, 556, 594
SsiI	CCGC	2 cut(s)	28, 67
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	4 cut(s)	449, 545, 600, 727
StyD4I	CCNGG	3 cut(s)	160, 214, 642
StyI	CCWWGG	2 cut(s)	419, 448
TaaI	ACNGT	2 cut(s)	443, 587
TaqI	TCGA	3 cut(s)	18, 406, 525
TasI	AATT	6 cut(s)	45, 58, 145, 189, 556, 594
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	185, 352, 603
Tru1I	TTAA	2 cut(s)	57, 437
Tru9I	TTAA	2 cut(s)	57, 437
TseI	GCWGC	1 cut(s)	679
TspDTI	ATGAA	5 cut(s)	264, 308, 414, 595, 617
TspGWI	ACGGA	3 cut(s)	78, 197, 522
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	2 cut(s)	140, 697
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	448
XspI	CTAG	4 cut(s)	449, 545, 600, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.