Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Reverse (-)

49896182 .. 49900329

Gene Structure 4148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG277600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTTAACTGGAATAATCCCCGTTGCAGGTTTTGTTTGGAATACTTTTGCTTGTGCATGTACCAAATTTGGTTACTTATCCTGGTTATACTCCAATCCATACGGAATCAATTGATGATGCCTACCAAGCACTTCTTGGTGGAGAGCAAATCTATCCTGAGAGGAATGCCAACTTATTTTCCACTTGGCTATCAAAGACCTCTTACGGAGAAGGATATATGGAAATTGGATACTTGGGATCGGACTGAAATGCTGAGCAATAAGTTCCAAAAATGTTGGGCTGATGAAAACCGAAAGCCTAAACCATGGCTCTTGATAGCCTTAAACTGTAGCCTAGGGGGAAGGTTCTGCTGGGGAGGCTTTTGGAAGGTTATCATCTTCTTCTTTTCTTCCTTTCTGCTTTTCACACATCTCATTCAGATGTCACTGTTGTTCTTTTTCCTTTTTTCTTTTCGTGTAAGTATAATAGATAGCACAATCTCAACACGCATAATACATGAATTGTTAGTCCAACGGGCTCATTACAGCATACATGGTTCTCCTCTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

183

Amino Acids

22.04

Weight (kDa)

9.4

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	81
AlwI	GGATC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	66
AspA2I	CCTAGG	1 cut(s)	334
AvrII	CCTAGG	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	335, 550
BfmI	CTRYAG	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	223
BlnI	CCTAGG	1 cut(s)	334
BlpI	GCTNAGC	1 cut(s)	254
Bme1390I	CCNGG	1 cut(s)	83
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	305, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	305, 334
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	149, 245
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	531
BseYI	CCCAGC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	305
BspCNI	CTCAG	2 cut(s)	150, 246
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	2 cut(s)	305, 334
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	2 cut(s)	305, 334
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	329, 429
BstDEI	CTNAG	2 cut(s)	158, 254
BstDSI	CCRYGG	1 cut(s)	305
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 357
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	425
BveI	ACCTGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	4 cut(s)	58, 306, 497, 533
CviJI	RGCY	8 cut(s)	189, 281, 298, 310, 320, 333, 360, 518
CviKI_1	RGCY	8 cut(s)	189, 281, 298, 310, 320, 333, 360, 518
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	158, 254
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	305, 334
Eco24I	GRGCYC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	305, 334
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	2 cut(s)	305, 334
FaeI	CATG	4 cut(s)	61, 309, 500, 536
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	4 cut(s)	57, 305, 496, 532
FriOI	GRGCYC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	335, 550
GsaI	CCCAGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	61, 309, 500, 536
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	243, 420
Hpy188III	TCNNGA	2 cut(s)	157, 313
HpyAV	CCTTC	3 cut(s)	205, 336, 361
HpyCH4III	ACNGT	2 cut(s)	329, 429
HpyCH4V	TGCA	2 cut(s)	27, 57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 357
HpyF3I	CTNAG	2 cut(s)	158, 254
Hsp92II	CATG	4 cut(s)	61, 309, 500, 536
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	5 cut(s)	13, 68, 95, 170, 337
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	2 cut(s)	335, 550
MaeIII	GTNAC	2 cut(s)	72, 423
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	370, 373, 381
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	4 cut(s)	66, 110, 224, 500
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	4 cut(s)	155, 210, 350, 552
MseI	TTAA	2 cut(s)	6, 323
MslI	CAYNNNNRTG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	127, 357
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	4 cut(s)	61, 309, 500, 536
NmuCI	GTSAC	1 cut(s)	423
NspI	RCATGY	1 cut(s)	61
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	6, 323
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	4 cut(s)	32, 202, 347, 372
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	66, 110, 224, 500
SspMI	CTAG	2 cut(s)	335, 550
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	305, 334
TaaI	ACNGT	2 cut(s)	329, 429
TasI	AATT	4 cut(s)	66, 110, 224, 500
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	6, 323
Tru9I	TTAA	2 cut(s)	6, 323
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	300, 513
TspGWI	ACGGA	2 cut(s)	118, 221
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmaJI	CCTAGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	335, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.