Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Forward (+)

60626888 .. 60638912

Gene Structure 12025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCTTGATAGCCTTAAACTGTTCTGCTGGGGAGGCTTTTGGAAGGTTGATGCTACAAATCGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAACGACATACAGCTGCAGGTGAAGAAATAACTTACAATTATAAGTTTCCATTAGAGGAGAAAAAGATTCCATGCAATTGTGGTTCAAAAAGGACCAATCCTAAGCTGGCAGTTGAGCTGAAGACTTCGGAGTCCAGGGCGACTAGTTCTGTGTGTACGGATGTAGGTACCATTGCTGACGTTGGTGTGGTGCTGGAACCCCTTTCCCATGAGGGCCGGGCTCCTGTGGACAACTCCAAGGAACCCAACAAGCCCTTTACGACTCATCATCCCTCTCCACTCCACTCCCCTCCTCTCCTCTCCAAAGCCAATGACCCACCCCCACCTCCATCCCCCTACTCCGACCAACCTTACTCCAGATTGGGAATGGGTGAAGAGACAATTGACGATGGCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009909 GO:0009987 GO:0010228 GO:0010452 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0051568 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

187

Amino Acids

20.57

Weight (kDa)

7.0

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	15 - 69	6e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	125, 204
AarI	CACCTGC	1 cut(s)	170
AasI	GACNNNNNNGTC	1 cut(s)	292
Acc36I	ACCTGC	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	319, 331
AgsI	TTSAA	1 cut(s)	249
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	176, 268, 280
AluI	AGCT	3 cut(s)	176, 268, 280
Alw26I	GTCTC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	176
Asp718I	GGTACC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	255, 376
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	149, 194, 545
AvaII	GGWCC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	499, 545
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	533
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	2 cut(s)	78, 306
BfmI	CTRYAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	298, 380
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	255, 376
BmiI	GGNNCC	4 cut(s)	331, 360, 384, 405
BmrFI	CCNGG	2 cut(s)	298, 380
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	117, 297, 399
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	3 cut(s)	117, 297, 399
BseGI	GGATG	3 cut(s)	328, 430, 491
BseMI	GCAATG	1 cut(s)	333
BseRI	GAGGAG	3 cut(s)	233, 444, 449
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	331, 360, 384, 405
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	117, 297, 399
BssT1I	CCWWGG	2 cut(s)	117, 399
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	328, 430, 491
BstMAI	GTCTC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	296, 378
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	328, 430, 491
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	255, 376
Csp6I	GTAC	2 cut(s)	318, 330
CviAII	CATG	3 cut(s)	234, 371, 561
CviQI	GTAC	2 cut(s)	318, 330
DdeI	CTNAG	1 cut(s)	264
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	117, 399
Eco24I	GRGCYC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	2 cut(s)	117, 399
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	2 cut(s)	117, 399
FaeI	CATG	3 cut(s)	237, 374, 564
FaiI	YATR	8 cut(s)	86, 125, 159, 171, 204, 235, 372, 562
FatI	CATG	3 cut(s)	233, 370, 560
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	3 cut(s)	335, 417, 478
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	78, 306
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	34
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	379
Hin1II	CATG	3 cut(s)	237, 374, 564
HinfI	GANTC	4 cut(s)	81, 229, 293, 424
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	3 cut(s)	149, 194, 545
Hpy166II	GTNNAC	2 cut(s)	318, 391
Hpy188I	TCNGA	2 cut(s)	292, 505
Hpy188III	TCNNGA	2 cut(s)	8, 519
Hpy8I	GTNNAC	2 cut(s)	318, 391
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	161, 179, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	3 cut(s)	237, 374, 564
KpnI	GGTACC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	16, 165, 254, 283, 310, 341, 392, 399, 532
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	78, 306
MaeII	ACGT	1 cut(s)	342
MboII	GAAGA	3 cut(s)	197, 295, 548
MfeI	CAATTG	2 cut(s)	238, 543
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	4 cut(s)	72, 199, 238, 543
MlyI	GAGTC	2 cut(s)	302, 418
MmeI	TCCRAC	1 cut(s)	528
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	298, 380
MunI	CAATTG	2 cut(s)	238, 543
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	380
NlaIII	CATG	3 cut(s)	237, 374, 564
NlaIV	GGNNCC	4 cut(s)	331, 360, 384, 405
PaqCI	CACCTGC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	81, 229
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	2 cut(s)	301, 418
PpsI	GAGTC	2 cut(s)	301, 418
PsiI	TTATAA	2 cut(s)	125, 204
Psp6I	CCWGG	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	331, 360, 384, 405
PspPI	GGNCC	2 cut(s)	255, 376
PstI	CTGCAG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	319, 331
RsaNI	GTAC	2 cut(s)	318, 330
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	255, 376
SchI	GAGTC	2 cut(s)	302, 418
ScrFI	CCNGG	2 cut(s)	298, 380
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	96
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	4 cut(s)	72, 199, 238, 543
SspMI	CTAG	2 cut(s)	78, 306
StyD4I	CCNGG	2 cut(s)	296, 378
StyI	CCWWGG	2 cut(s)	117, 399
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	345
TasI	AATT	4 cut(s)	72, 199, 238, 543
TfiI	GAWTC	2 cut(s)	81, 229
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	73, 142
TspGWI	ACGGA	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 526
XspI	CTAG	2 cut(s)	78, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.