Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Reverse (-)

46137130 .. 46138736

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACAATCGCTTCCCTTCCCATCCCATCACTTTTAGGGCCTCACGTTACGAGGGTCGTGAAGAAGAGTGGGCTGGCGGTGGAGGAGGCTAGGTTACGCGAAGAGGGTGGTGCAGAGGCGTCGGCGGAGAGAGAGACGGAGCTTGGGGATGGGATTGGGAGTGGGATCGAGCTTGAGGAAGGGACATGGAGTGAAGAAGCATTTGAATTTGGGGTTTTGTTTGGAATACTTTTGCTTGTGCATGTACCAAATTTGTTTACTTATCCTGGTTATCCTCCAATCCATACGGAATCAATTGATGATGCCTACCAAACGCTTCCTGGTGGAGAGCAAATCTGTCCTGAGAGGAATGCCAACTTATTTTCCAGTGAGACTTTATGCCTGAAATTTATAATCTTTGATGATGTTTGTAGCAATGCTGATATTGTTATTGTTGCTGCTATGGCTGATTTGTCAGCTGATATCTGGATTTTCTCTGTTTTTACCAGGAATATTATTTTCATGGGTGAGTCCCTTTATGAAGCTTGGCTATCAAAGACCTCTTACGGAGAAGGATATATGGAAATTGGATACTTGGGATCGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

196

Amino Acids

21.24

Weight (kDa)

4.23

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	77, 125
AclWI	GGATC	2 cut(s)	173, 586
AcsI	RAATTY	3 cut(s)	206, 250, 386
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	3 cut(s)	265, 319, 485
AluBI	AGCT	4 cut(s)	142, 172, 458, 524
AluI	AGCT	4 cut(s)	142, 172, 458, 524
Alw26I	GTCTC	2 cut(s)	128, 365
AlwI	GGATC	2 cut(s)	173, 586
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	3 cut(s)	206, 250, 386
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	3 cut(s)	29, 34, 143
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	3 cut(s)	267, 321, 487
BciVI	GTATCC	1 cut(s)	563
BcoDI	GTCTC	2 cut(s)	128, 365
BfaI	CTAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	3 cut(s)	267, 321, 487
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	267, 321, 487
BmsI	GCATC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	267, 321, 487
BseGI	GGATG	2 cut(s)	21, 154
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	40
BslFI	GGGAC	2 cut(s)	196, 496
BsmAI	GTCTC	2 cut(s)	128, 365
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	196, 496
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	165, 578
BspACI	CCGC	2 cut(s)	77, 125
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	173, 586
BsrDI	GCAATG	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	165, 578
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	3 cut(s)	267, 321, 487
Bst6I	CTCTTC	2 cut(s)	59, 96
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	21, 154
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	168, 581
BstMAI	GTCTC	2 cut(s)	128, 365
BstMBI	GATC	2 cut(s)	165, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	3 cut(s)	267, 321, 487
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	265, 319, 485
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	21, 154
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	3 cut(s)	186, 242, 502
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	167, 580
DpnII	GATC	2 cut(s)	165, 578
Eam1104I	CTCTTC	2 cut(s)	59, 96
EarI	CTCTTC	2 cut(s)	59, 96
EciI	GGCGGA	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	265, 319, 485
EcoRV	GATATC	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	189, 245, 505
FaqI	GGGAC	2 cut(s)	196, 496
FatI	CATG	3 cut(s)	185, 241, 501
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	2 cut(s)	8, 161
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	189, 245, 505
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	2 cut(s)	290, 509
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	58, 341, 466
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	26, 173, 545
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	113, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	189, 245, 505
Kzo9I	GATC	2 cut(s)	165, 578
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	46, 93
MalI	GATC	2 cut(s)	167, 580
MboI	GATC	2 cut(s)	165, 578
MboII	GAAGA	4 cut(s)	73, 76, 113, 206
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	5 cut(s)	206, 250, 294, 386, 564
MlyI	GAGTC	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	3 cut(s)	267, 321, 487
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	3 cut(s)	267, 321, 487
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	2 cut(s)	165, 578
NlaIII	CATG	3 cut(s)	189, 245, 505
NspI	RCATGY	1 cut(s)	245
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	265, 319, 485
PspGI	CCWGG	3 cut(s)	265, 319, 485
PspPI	GGNCC	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	165, 578
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	267, 321, 487
SetI	ASST	7 cut(s)	48, 95, 144, 174, 460, 526, 542
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	5 cut(s)	206, 250, 294, 386, 564
SsiI	CCGC	2 cut(s)	77, 125
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	265, 319, 485
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	206, 250, 294, 386, 564
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	490, 534
TspGWI	ACGGA	3 cut(s)	152, 302, 561
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	3 cut(s)	206, 250, 386
XceI	RCATGY	1 cut(s)	245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.