Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Forward (+)

14493682 .. 14500644

Gene Structure 6963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG081400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCTTGAGGAAGCTGTCAATATTTATGTGAAGTTCTTGCAACTCCAAATCAAGGGTTTAGGTGCAGAGGCATCAGCGGAGAGAGAGACGGAGCTTGGGGATGGGATTGGGATTGGGATCGAGCTTGAGGAAGGGACATGGAGCGAAGAAGCATTTGAATTTGGGGTTTTGTTTGGAATACTTTTGCTTGGGCATGTACCAAATTTGTTTACTTATCCTGGTTATACTCCAATCCATACGGAATCAATTGATGATGCCTACCAAACACTTCCTGGTGGAGAGCAAATATGTCCTGAGAGGAATGCCAACTTATTTTCCAGTGAGACTTTATGCCTGAAATTTATAATCTTTGATGATGTTTGTTGCAATGCTGATATTGTTATTGTTGCTGCTATGGCTTATTTGTCAGCTGATATCTGGATTTTCTCTGTTTTTACCAGGAATATTATTTTCATGGGTGAGTCCATTTATGAAGCTTGGCTATCAAAGACCTCTTACGGAGAAGGATATATGGAAATTGGATACTTGGGATCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

179

Amino Acids

19.78

Weight (kDa)

4.05

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	125, 538
AcsI	RAATTY	3 cut(s)	158, 202, 338
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	3 cut(s)	217, 271, 437
AluBI	AGCT	5 cut(s)	14, 94, 124, 410, 476
AluI	AGCT	5 cut(s)	14, 94, 124, 410, 476
Alw26I	GTCTC	2 cut(s)	80, 317
AlwI	GGATC	2 cut(s)	125, 538
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	3 cut(s)	158, 202, 338
AsuHPI	GGTGA	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	3 cut(s)	219, 273, 439
BciVI	GTATCC	1 cut(s)	515
BcoDI	GTCTC	2 cut(s)	80, 317
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	3 cut(s)	219, 273, 439
BmrFI	CCNGG	3 cut(s)	219, 273, 439
BmsI	GCATC	2 cut(s)	80, 244
BpuEI	CTTGAG	2 cut(s)	26, 146
BsaBI	GATNNNNATC	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	373
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	219, 273, 439
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	80, 317
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	117, 530
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	286
BspPI	GGATC	2 cut(s)	125, 538
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	117, 530
Bst2UI	CCWGG	3 cut(s)	219, 273, 439
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	120, 533
BstMAI	GTCTC	2 cut(s)	80, 317
BstMBI	GATC	2 cut(s)	117, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	3 cut(s)	219, 273, 439
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	3 cut(s)	217, 271, 437
BstV1I	GCAGC	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	3 cut(s)	138, 194, 454
CviJI	RGCY	8 cut(s)	14, 94, 124, 398, 410, 476, 481, 537
CviKI_1	RGCY	8 cut(s)	14, 94, 124, 398, 410, 476, 481, 537
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	119, 532
DpnII	GATC	2 cut(s)	117, 530
Eco32I	GATATC	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	217, 271, 437
EcoRV	GATATC	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	3 cut(s)	141, 197, 457
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	3 cut(s)	137, 193, 453
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	141, 197, 457
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	2 cut(s)	242, 461
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	293, 418
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	125, 497
HpyCH4V	TGCA	3 cut(s)	40, 65, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	141, 197, 457
Kzo9I	GATC	2 cut(s)	117, 530
LmnI	GCTCC	2 cut(s)	91, 141
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	80, 244
MalI	GATC	2 cut(s)	119, 532
MboI	GATC	2 cut(s)	117, 530
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	246
MluCI	AATT	5 cut(s)	158, 202, 246, 338, 516
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	4 cut(s)	61, 121, 291, 502
MspA1I	CMGCKG	2 cut(s)	77, 410
MspR9I	CCNGG	3 cut(s)	219, 273, 439
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	219, 273, 439
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeII	GATC	2 cut(s)	117, 530
NlaIII	CATG	3 cut(s)	141, 197, 457
NspI	RCATGY	1 cut(s)	197
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PsiI	TTATAA	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	217, 271, 437
PspGI	CCWGG	3 cut(s)	217, 271, 437
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	117, 530
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	3 cut(s)	219, 273, 439
SetI	ASST	7 cut(s)	16, 64, 96, 126, 412, 478, 494
SfaNI	GCATC	2 cut(s)	80, 244
SmlI	CTYRAG	2 cut(s)	5, 125
SmoI	CTYRAG	2 cut(s)	5, 125
Sse9I	AATT	5 cut(s)	158, 202, 246, 338, 516
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	2 cut(s)	22, 445
StyD4I	CCNGG	3 cut(s)	217, 271, 437
TaqI	TCGA	1 cut(s)	120
TasI	AATT	5 cut(s)	158, 202, 246, 338, 516
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	442, 486
TspGWI	ACGGA	3 cut(s)	104, 254, 513
TspRI	CASTG	1 cut(s)	325
XapI	RAATTY	3 cut(s)	158, 202, 338
XceI	RCATGY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.