Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Forward (+)

65871215 .. 65876953

Gene Structure 5739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG490400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAAAGTGTTGATGCAATGAAAATTGCATGGAATGCTGTTGCATGGTGCGGGAAGCTGAATGCCATAGCTCAGAAACTTGTGCAAGAATTCCAGGATGCGGTTCATGAGGTGTCTCAACATATGGAAGAGGTTTTGTTTGGAATACTTTTGCTTGTGCATGTACCAAATTTGGTTACTTATCCTGGTTATACTCCAATCCATACGAAATCAATTGATGATGCCTACCAAGCACTTCCTGGTGGAGAGCAAATCTGTCCTGAGAGGAATGCCAACTTATTTTCCAGAATATTATTTTCATGGGTGAGTCCCTTTATGAAGCTTGGCTATCAAAGACCTCTTACGGAGAAGGATATATGGAAATTGGATACTTGGGATCGGACTGAAACGATGAGCAATAAGTTCCAAAAATGTTGGGCTGATGAAAACCGAAAGCCTAAACCATGGCTCTTGATAGCCTTAAACTGTAGCCTAGGGGGAAGGTTCTGCTGGGGAGGCTTTTGGAAGGTTGATGCTACAAATCGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAACGACATACAGCTGCAGTTTCATACTTTGATGTGCCTGGAGGAGCTGGAGTTGTTCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

228

Amino Acids

25.85

Weight (kDa)

8.12

Isoelectric Point (pI)

30.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	143 - 211	8.6e-11	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AciI	CCGC	2 cut(s)	51, 101
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	89, 169
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	100
AjnI	CCWGG	4 cut(s)	93, 184, 238, 658
AluBI	AGCT	5 cut(s)	58, 71, 322, 635, 668
AluI	AGCT	5 cut(s)	58, 71, 322, 635, 668
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	89, 169
AspA2I	CCTAGG	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	316, 608
AvrII	CCTAGG	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	622
BciT130I	CCWGG	4 cut(s)	95, 186, 240, 660
BciVI	GTATCC	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	473, 537
BfmI	CTRYAG	2 cut(s)	466, 636
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	636
BlnI	CCTAGG	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	4 cut(s)	95, 186, 240, 660
BmrFI	CCNGG	4 cut(s)	95, 186, 240, 660
BmsI	GCATC	4 cut(s)	4, 88, 211, 502
BpmI	CTGGAG	1 cut(s)	681
BsaJI	CCNNGG	3 cut(s)	443, 472, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	4 cut(s)	95, 186, 240, 660
BseDI	CCNNGG	3 cut(s)	443, 472, 576
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	86, 252
BseRI	GAGGAG	1 cut(s)	678
BseXI	GCAGC	1 cut(s)	622
BseYI	CCCAGC	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	3 cut(s)	40, 67, 274
Bsp143I	GATC	1 cut(s)	376
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	2 cut(s)	51, 101
BspCNI	CTCAG	2 cut(s)	85, 253
BspHI	TCATGA	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	443, 472, 576
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	3 cut(s)	443, 472, 576
Bst2UI	CCWGG	4 cut(s)	95, 186, 240, 660
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	72, 261
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 230, 495
BstNI	CCWGG	4 cut(s)	95, 186, 240, 660
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	4 cut(s)	93, 184, 238, 658
BstSFI	CTRYAG	2 cut(s)	466, 636
BstV1I	GCAGC	1 cut(s)	622
BsuI	GTATCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	7 cut(s)	30, 45, 107, 161, 300, 444, 684
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	72, 261
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	3 cut(s)	443, 472, 576
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	4 cut(s)	93, 184, 238, 658
EcoT14I	CCWWGG	3 cut(s)	443, 472, 576
ErhI	CCWWGG	3 cut(s)	443, 472, 576
FaeI	CATG	7 cut(s)	33, 48, 110, 164, 303, 447, 687
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	7 cut(s)	29, 44, 106, 160, 299, 443, 683
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	2 cut(s)	473, 537
GluI	GCNGC	1 cut(s)	636
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	681
Hin1II	CATG	7 cut(s)	33, 48, 110, 164, 303, 447, 687
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	307, 540
HphI	GGTGA	2 cut(s)	316, 608
Hpy188I	TCNGA	2 cut(s)	75, 381
Hpy188III	TCNNGA	4 cut(s)	107, 260, 285, 451
HpyAV	CCTTC	3 cut(s)	343, 474, 499
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4V	TGCA	7 cut(s)	17, 29, 44, 85, 160, 620, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 230, 495
HpyF3I	CTNAG	2 cut(s)	72, 261
Hsp92II	CATG	7 cut(s)	33, 48, 110, 164, 303, 447, 687
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	4 cut(s)	4, 88, 211, 502
MaeI	CTAG	2 cut(s)	473, 537
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	140, 671
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	6 cut(s)	24, 89, 169, 213, 362, 531
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	103, 124, 258, 348, 488, 521, 586, 656
MseI	TTAA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	635
MspR9I	CCNGG	4 cut(s)	95, 186, 240, 660
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	3 cut(s)	40, 67, 274
MvaI	CCWGG	4 cut(s)	95, 186, 240, 660
MwoI	GCNNNNNNNGC	3 cut(s)	35, 230, 495
NcoI	CCATGG	1 cut(s)	443
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	7 cut(s)	33, 48, 110, 164, 303, 447, 687
NspI	RCATGY	1 cut(s)	164
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	3 cut(s)	40, 67, 274
PfeI	GAWTC	1 cut(s)	540
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	584
Psp6I	CCWGG	4 cut(s)	93, 184, 238, 658
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	4 cut(s)	93, 184, 238, 658
PstI	CTGCAG	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	4 cut(s)	95, 186, 240, 660
SfaNI	GCATC	4 cut(s)	4, 88, 211, 502
SfcI	CTRYAG	2 cut(s)	466, 636
SmiMI	CAYNNNNRTG	1 cut(s)	555
Sse9I	AATT	6 cut(s)	24, 89, 169, 213, 362, 531
SsiI	CCGC	2 cut(s)	51, 101
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	473, 537
StyD4I	CCNGG	4 cut(s)	93, 184, 238, 658
StyI	CCWWGG	3 cut(s)	443, 472, 576
TaaI	ACNGT	1 cut(s)	467
TasI	AATT	6 cut(s)	24, 89, 169, 213, 362, 531
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	8 cut(s)	35, 95, 288, 332, 438, 532, 601, 633
TspGWI	ACGGA	1 cut(s)	359
XapI	RAATTY	2 cut(s)	89, 169
XceI	RCATGY	1 cut(s)	164
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmaJI	CCTAGG	1 cut(s)	472
XspI	CTAG	2 cut(s)	473, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.