Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Forward (+)

65153666 .. 65159462

Gene Structure 5797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG458700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAAAGTGTTGATGCAATGAAAATTGCATGGAATGCTGTTGCATGGTGCGGGAAGCTGAATGCCATAGCTCAGAAACTTGTGCAAGAATTCCAGGATGCGGTTCATGAGGTGTCTCAACATATGGAAGAGCTCGACCTCTATGGCCATCAGAGGCGTCGATTTCAAGCGGTTTTGTTTGGAATACTTTTGCTTGTGCATGTACCAAATTTGGTTACTTATCCTGGTTATACTCCAATCCATACGAAATCAATTGATGATGCCTACCAAGCACTTCCTGGTGGAGAGCAAATCTGTCCTGAGAGGAATGCCAACTTATTTTCCAGAATATTATTTTCATGGGTGAGTCCCTTTATGAAGCTTGGCTATCAAAGACCTCTTACGGAGAAGGATATATGGAAATTGGATACTTGGGATCGGACTGAAACGATGAGCAATAAGTTCCAAAAATGTTGGGCTGATGAAAACCGAAAGCCTAAACCATGGCTCTTGATAGCCTTAAACTGTAGCCTAGGGGGAAGGTTCTGCTGGGGAGGCTTTTGGAAGGTTGATGCTACAAATCGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCCTAACTGCTACACCAAGGTTATAAGTGTTGAGGGTGAGAAAAAGATTTTCATTTATGCAAAACGACATACAGCTGCAGGTGAAGAAATAACTTACAATTATAAGTTTCCATTAGAGGAGAAAAAGATTCCATGCAATTGTGGTTCAAAAAGGTTTCGTGTTCATTGCAGCTTTTGGCATCCATCATGTGTTGCATTAGATTTTAGTTTTCAGTTTCATACTTTGATGTGCCTGGAGGAGCTGGAGTTGTTCTTCCATGATAGAAAGCAGCCTGCCCTTTGCATGCTGTTTTGTATTCCTTATGGCAAAGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

305

Amino Acids

35.38

Weight (kDa)

8.46

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	156 - 235	3.9e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	623, 702
AarI	CACCTGC	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	668
AciI	CCGC	3 cut(s)	51, 101, 170
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	89, 208
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	167, 747
AjnI	CCWGG	4 cut(s)	93, 223, 277, 831
AluBI	AGCT	7 cut(s)	58, 71, 133, 361, 674, 771, 841
AluI	AGCT	7 cut(s)	58, 71, 133, 361, 674, 771, 841
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	423
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	674, 768, 868
ApoI	RAATTY	2 cut(s)	89, 208
AspA2I	CCTAGG	1 cut(s)	511
AsuHPI	GGTGA	3 cut(s)	355, 647, 692
AvrII	CCTAGG	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	661, 780, 880
BccI	CCATC	2 cut(s)	156, 790
BciT130I	CCWGG	4 cut(s)	95, 225, 279, 833
BciVI	GTATCC	1 cut(s)	400
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	3 cut(s)	512, 576, 916
BfmI	CTRYAG	2 cut(s)	505, 675
BfuAI	ACCTGC	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	3 cut(s)	675, 769, 869
BlnI	CCTAGG	1 cut(s)	511
BlsI	GCNGC	3 cut(s)	676, 770, 870
Bme1390I	CCNGG	4 cut(s)	95, 225, 279, 833
BmrFI	CCNGG	4 cut(s)	95, 225, 279, 833
BmsI	GCATC	5 cut(s)	4, 88, 250, 541, 787
BpmI	CTGGAG	2 cut(s)	854, 863
BsaHI	GRCGYC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	482, 511, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse3DI	GCAATG	2 cut(s)	24, 763
BseBI	CCWGG	4 cut(s)	95, 225, 279, 833
BseDI	CCNNGG	3 cut(s)	482, 511, 615
BseGI	GGATG	2 cut(s)	103, 778
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	2 cut(s)	24, 763
BseMII	CTCAG	2 cut(s)	86, 291
BseRI	GAGGAG	2 cut(s)	731, 851
BseXI	GCAGC	3 cut(s)	661, 780, 880
BseYI	CCCAGC	1 cut(s)	528
BshFI	GGCC	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	3 cut(s)	40, 67, 313
BsnI	GGCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	415
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	3 cut(s)	51, 101, 170
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	85, 292
BspHI	TCATGA	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	668
BspPI	GGATC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	24, 763
BssECI	CCNNGG	3 cut(s)	482, 511, 615
BssMI	GATC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	157
BssT1I	CCWWGG	3 cut(s)	482, 511, 615
Bst2UI	CCWGG	4 cut(s)	95, 225, 279, 833
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	873, 884
BstDEI	CTNAG	2 cut(s)	72, 300
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	2 cut(s)	103, 778
BstKTI	GATC	1 cut(s)	418
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	415
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 269, 534, 912
BstNI	CCWGG	4 cut(s)	95, 225, 279, 833
BstNSI	RCATGY	2 cut(s)	203, 886
BstSCI	CCNGG	4 cut(s)	93, 223, 277, 831
BstSFI	CTRYAG	2 cut(s)	505, 675
BstV1I	GCAGC	3 cut(s)	661, 780, 880
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	103, 778
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	2 cut(s)	873, 884
CciI	TCATGA	1 cut(s)	106
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	203
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	2 cut(s)	72, 300
DpnI	GATC	1 cut(s)	417
DpnII	GATC	1 cut(s)	415
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	3 cut(s)	482, 511, 615
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	4 cut(s)	93, 223, 277, 831
EcoT14I	CCWWGG	3 cut(s)	482, 511, 615
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	3 cut(s)	482, 511, 615
FaqI	GGGAC	1 cut(s)	333
FauI	CCCGC	1 cut(s)	44
FauNDI	CATATG	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	675, 769, 869
FokI	GGATG	2 cut(s)	110, 765
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	675, 769, 869
FspBI	CTAG	3 cut(s)	512, 576, 916
GluI	GCNGC	3 cut(s)	675, 769, 869
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	2 cut(s)	854, 863
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	3 cut(s)	346, 579, 727
HphI	GGTGA	3 cut(s)	355, 647, 692
Hpy188I	TCNGA	3 cut(s)	75, 153, 420
Hpy188III	TCNNGA	4 cut(s)	107, 299, 324, 490
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	382, 513, 538
HpyCH4III	ACNGT	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 269, 534, 912
HpyF3I	CTNAG	2 cut(s)	72, 300
Hsp92I	GRCGYC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	415
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	3 cut(s)	661, 780, 880
LweI	GCATC	5 cut(s)	4, 88, 250, 541, 787
MaeI	CTAG	3 cut(s)	512, 576, 916
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	417
MboI	GATC	1 cut(s)	415
MboII	GAAGA	3 cut(s)	140, 695, 844
MfeI	CAATTG	2 cut(s)	252, 736
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	8 cut(s)	24, 89, 208, 252, 401, 570, 697, 736
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	355
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	674
MspR9I	CCNGG	4 cut(s)	95, 225, 279, 833
MunI	CAATTG	2 cut(s)	252, 736
Mva1269I	GAATGC	3 cut(s)	40, 67, 313
MvaI	CCWGG	4 cut(s)	95, 225, 279, 833
MwoI	GCNNNNNNNGC	4 cut(s)	35, 269, 534, 912
NcoI	CCATGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	203, 886
PaeI	GCATGC	1 cut(s)	886
PagI	TCATGA	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	668
PciSI	GCTCTTC	1 cut(s)	123
PctI	GAATGC	3 cut(s)	40, 67, 313
PfeI	GAWTC	2 cut(s)	579, 727
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	676, 770, 870
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PsiI	TTATAA	2 cut(s)	623, 702
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	4 cut(s)	93, 223, 277, 831
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	4 cut(s)	93, 223, 277, 831
PstI	CTGCAG	1 cut(s)	679
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	3 cut(s)	675, 769, 869
Sau3AI	GATC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	4 cut(s)	95, 225, 279, 833
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	5 cut(s)	4, 88, 250, 541, 787
SfcI	CTRYAG	2 cut(s)	505, 675
SmiMI	CAYNNNNRTG	1 cut(s)	594
SphI	GCATGC	1 cut(s)	886
Sse9I	AATT	8 cut(s)	24, 89, 208, 252, 401, 570, 697, 736
SsiI	CCGC	3 cut(s)	51, 101, 170
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	3 cut(s)	512, 576, 916
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	93, 223, 277, 831
StyI	CCWWGG	3 cut(s)	482, 511, 615
TaaI	ACNGT	1 cut(s)	506
TaqI	TCGA	2 cut(s)	135, 160
TasI	AATT	8 cut(s)	24, 89, 208, 252, 401, 570, 697, 736
TfiI	GAWTC	2 cut(s)	579, 727
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TseI	GCWGC	3 cut(s)	674, 768, 868
TspDTI	ATGAA	9 cut(s)	35, 95, 327, 371, 477, 571, 640, 752, 806
TspGWI	ACGGA	1 cut(s)	398
XapI	RAATTY	2 cut(s)	89, 208
XceI	RCATGY	2 cut(s)	203, 886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmaJI	CCTAGG	1 cut(s)	511
XspI	CTAG	3 cut(s)	512, 576, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.