Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016423

Physical Location & Seq

Genomic Coordinates Forward (+)

66054779 .. 66064505

Gene Structure 9727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG463500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATATACTACAGTAGTTTCTCGTTGCTAAAACGTAAGAGCGTTGTGCCTGCAAAGTCGACAATCATAAGCGAAGAGTTGGTTTTCCTCCATGGCCATCAGAGGCGTCGATTTCAAGCGGTTTTGTTTGGAATACTTTTGCTTGTGCATGTACCAAATTTGGTTACTTATCCTGGTTATACTCCAATCCATACGGAATCAATTGATGATGCCTACCAAGCACTTCCTGGTGGAGAGCAAATCTGTCCTGAGAGGAATGCCAACTTATTTTCCAGAATATTATTTTCATGGCCTAGGGGGAAGGTTGATGCTACAAATCGTGGAGGAATTGCTAGATTCATAAACCATTCTTGTGAGCTGCAGGTGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0042946 GO:0042947 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098588 GO:0098805 GO:1901264 GO:1901505 GO:1901656 GO:1902417 GO:1902418

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

124

Amino Acids

14.08

Weight (kDa)

9.64

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016423)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356201 RchiOBHm_Chr2g0159751
rosa_laevigata	RLG00000015568 RLG00000025496
rosa_roxburghii	Rroxscaffold_4G00322460
rosa_rugosa	Rorug07G0317700
rosa_samantha	Rh4AG076500 Rh4CG081400 Rh5AG182200 Rh6BG277600 Rh7CG490400 Rh7DG458700 Rh7DG463500
rosa_wichuraiana	Rw4G031300 Rw7G039380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	2 cut(s)	172, 226
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
AoxI	GGCC	2 cut(s)	94, 290
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	157
AspA2I	CCTAGG	1 cut(s)	293
AvrII	CCTAGG	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	174, 228
BfaI	CTAG	2 cut(s)	294, 333
BfmI	CTRYAG	2 cut(s)	10, 359
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	359
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	2 cut(s)	174, 228
BmrFI	CCNGG	2 cut(s)	174, 228
BmsI	GCATC	2 cut(s)	199, 298
BsaHI	GRCGYC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	91, 293
BseBI	CCWGG	2 cut(s)	174, 228
BseDI	CCNNGG	2 cut(s)	91, 293
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	2 cut(s)	96, 292
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	96, 292
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	96, 292
BspCNI	CTCAG	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	91, 293
BssNI	GRCGYC	1 cut(s)	106
BssT1I	CCWWGG	2 cut(s)	91, 293
Bst2UI	CCWGG	2 cut(s)	174, 228
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	2 cut(s)	174, 228
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	172, 226
BstSFI	CTRYAG	2 cut(s)	10, 359
BstV1I	GCAGC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	96, 292
BtgI	CCRYGG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	51
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	3 cut(s)	92, 149, 288
CviJI	RGCY	3 cut(s)	96, 292, 358
CviKI_1	RGCY	3 cut(s)	96, 292, 358
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	91, 293
EcoRII	CCWGG	2 cut(s)	172, 226
EcoT14I	CCWWGG	2 cut(s)	91, 293
ErhI	CCWWGG	2 cut(s)	91, 293
FaeI	CATG	3 cut(s)	95, 152, 291
FaiI	YATR	8 cut(s)	7, 68, 93, 150, 180, 192, 289, 341
FatI	CATG	3 cut(s)	91, 148, 287
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	2 cut(s)	294, 333
GluI	GCNGC	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	96, 292
HgaI	GACGC	1 cut(s)	95
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	95, 152, 291
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	197, 336
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	248, 273
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	53, 148, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	3 cut(s)	95, 152, 291
LpnPI	CCDG	8 cut(s)	63, 159, 186, 213, 240, 261, 286, 347
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	199, 298
MaeI	CTAG	2 cut(s)	294, 333
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	86
MfeI	CAATTG	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	3 cut(s)	157, 201, 327
MluNI	TGGCCA	1 cut(s)	96
MnlI	CCTC	4 cut(s)	96, 98, 246, 317
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	174, 228
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	2 cut(s)	174, 228
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	91
NlaIII	CATG	3 cut(s)	95, 152, 291
NspI	RCATGY	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	352
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	197, 336
PkrI	GCNGC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	172, 226
PspGI	CCWGG	2 cut(s)	172, 226
PstI	CTGCAG	1 cut(s)	363
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	351
SalI	GTCGAC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	174, 228
SetI	ASST	4 cut(s)	37, 306, 360, 366
SfaNI	GCATC	2 cut(s)	199, 298
SfcI	CTRYAG	2 cut(s)	10, 359
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	157, 201, 327
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	2 cut(s)	294, 333
StyD4I	CCNGG	2 cut(s)	172, 226
StyI	CCWWGG	2 cut(s)	91, 293
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	59, 109
TasI	AATT	3 cut(s)	157, 201, 327
TfiI	GAWTC	2 cut(s)	197, 336
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	276, 328
TspGWI	ACGGA	1 cut(s)	209
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	2 cut(s)	294, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.