Rorug07G0317700

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001589
Physical Location & Seq
Forward (+)
32397166 .. 32399493
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0317700.1

Sequence Viewer

Length: 1026 bp
ATGGGTCCTCAACAACATCACCAGATGAGGAGTGACTCTAGTTATCGTCAAGATTTGAACTTTTTTCCATCTCAACTGTGTCTCTCAAAAACCACCTTTGGAGTCGTAGCTAATTCGGAAATGGGTTATGGTGTTCATGACAGAAAGAGCGCCTTGTCTCTGAATCTTGTTGGAGATGAATCTGATCATGATGATGTTATACAGAGCGCTGCTGGCAAAACTAAACTTTGTGTTAGAGGCCATTGGAGGCCAGCTGAAGACTCTAAACTCAAACAACTTGTGGCCCAGTTTGGTCCTCAAAACTGGAACTTGATTGCTGAGCATCTTGATGGCAGATCAGGGAAAAGTTGCAGACTGAGGTGGTTTAACCAGCTAGATCCAAGGATCAACAGAAGGGATTTCAGTGAGGAAGAAGAAGAGAGGCTTTTATCTGCTCATAGACTTTATGGCAACAAATGGGCCATGATTGCGAGGCTCTTCCCTGGAAGGACTGATAATGCTGTCAAGAACCATTGGCATGTCATCATGGCTAGAATGCACAGAGAGCAATCCAACGTTTACAAGAGAAGAAAGCCCTCTTCTAATTCTCAGGCTGTTATTATTCCTCAACATGATCATGATCATGATCATGGTCAAGAAGATGGGGCTAAGAACAATGCCTCTAGTGATCGTTCAACAATCTCAATCAACACCAGTAATGATGAATCTGGCTCAGCAGCCTCTGCCTCAACATGTACTAATCTCTCCCTCACTCCCTCAAACAGACCACTTCTTCCCAGTTTTTTCAAGAACATCAATCCATTTCAGCAACACAAAACCTTTGGATCACAAATGGGCGCTGGCAGGATCAAGGGCAATGAGAATGGTCAGTCATCAGACTCGAACTCAGAAACTTCAGGAGATGAATCAGTACTCACCACCTATAGGACCAACAGCAATAATGTTTCTTCCATGTCCAGAGAAGCTCAAAGTGACAAGATCAGCGTGATGCCATTCATTGATTTCCTAGGAGTAGGCTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

341

Amino Acids

38.12

Weight (kDa)

8.32

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 79 - 125 5.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 82 - 142 1.2e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 131 - 173 6.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 134 - 182 3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 555
AclWI GGATC 4 cut(s) 371, 392, 832, 854
AcuI CTGAAG 2 cut(s) 276, 879
AfaI GTAC 2 cut(s) 736, 912
AfeI AGCGCT 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 924
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 3 cut(s) 58, 675, 787
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 4 cut(s) 110, 254, 373, 965
AluI AGCT 4 cut(s) 110, 254, 373, 965
Alw26I GTCTC 2 cut(s) 86, 162
AlwI GGATC 4 cut(s) 371, 392, 832, 854
AlwNI CAGNNNCTG 1 cut(s) 722
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 4 cut(s) 238, 248, 282, 459
ApeKI GCWGC 2 cut(s) 209, 716
AspA2I CCTAGG 1 cut(s) 1006
AspLEI GCGC 3 cut(s) 152, 209, 839
AspS9I GGNCC 5 cut(s) 5, 283, 293, 459, 927
AsuHPI GGTGA 2 cut(s) 11, 907
AvaII GGWCC 3 cut(s) 5, 293, 927
AvrII CCTAGG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 196, 728
BccI CCATC 3 cut(s) 76, 323, 635
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 4 cut(s) 184, 613, 619, 625
BcoDI GTCTC 2 cut(s) 86, 162
BfaI CTAG 5 cut(s) 39, 374, 531, 663, 1007
BfmI CTRYAG 1 cut(s) 922
BfoI RGCGCY 3 cut(s) 153, 210, 840
BisI GCNGC 2 cut(s) 210, 717
BlnI CCTAGG 1 cut(s) 1006
BlpI GCTNAGC 2 cut(s) 318, 712
BlsI GCNGC 2 cut(s) 211, 718
BmcAI AGTACT 1 cut(s) 912
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 3 cut(s) 5, 293, 927
BmgT120I GGNCC 5 cut(s) 5, 283, 293, 459, 927
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 280, 771
BmsI GCATC 2 cut(s) 331, 978
BmuI ACTGGG 2 cut(s) 280, 771
BpiI GAAGAC 1 cut(s) 264
Bpu1102I GCTNAGC 2 cut(s) 318, 712
BsaBI GATNNNNATC 2 cut(s) 618, 624
BsaJI CCNNGG 3 cut(s) 380, 481, 1006
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse1I ACTGG 4 cut(s) 286, 308, 693, 777
Bse3DI GCAATG 1 cut(s) 862
Bse8I GATNNNNATC 2 cut(s) 618, 624
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 380, 481, 1006
BseJI GATNNNNATC 2 cut(s) 618, 624
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 5 cut(s) 309, 347, 602, 726, 900
BseNI ACTGG 4 cut(s) 286, 308, 693, 777
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 196, 728
BshFI GGCC 4 cut(s) 240, 250, 284, 461
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 2 cut(s) 86, 162
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 4 cut(s) 240, 250, 284, 461
Bsp1720I GCTNAGC 2 cut(s) 318, 712
BspANI GGCC 4 cut(s) 240, 250, 284, 461
BspCNI CTCAG 5 cut(s) 310, 348, 601, 725, 899
BspHI TCATGA 4 cut(s) 136, 187, 616, 622
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 4 cut(s) 371, 392, 832, 854
BspQI GCTCTTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 4 cut(s) 286, 308, 693, 777
BssECI CCNNGG 3 cut(s) 380, 481, 1006
BssT1I CCWWGG 2 cut(s) 380, 1006
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 3 cut(s) 411, 482, 583
BstAPI GCANNNNNTGC 1 cut(s) 722
BstC8I GCNNGC 3 cut(s) 214, 252, 841
BstDEI CTNAG 6 cut(s) 318, 356, 588, 648, 712, 886
BstH2I RGCGCY 3 cut(s) 153, 210, 840
BstHHI GCGC 3 cut(s) 152, 209, 839
BstMAI GTCTC 2 cut(s) 86, 162
BstMWI GCNNNNNNNGC 4 cut(s) 213, 467, 544, 722
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 2 cut(s) 521, 735
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 922
BstV1I GCAGC 2 cut(s) 196, 728
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 240, 250, 284, 461
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 214, 252, 841
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 4 cut(s) 136, 187, 616, 622
CfoI GCGC 3 cut(s) 152, 209, 839
Cfr13I GGNCC 5 cut(s) 5, 283, 293, 459, 927
Csp6I GTAC 2 cut(s) 735, 911
CviQI GTAC 2 cut(s) 735, 911
DdeI CTNAG 6 cut(s) 318, 356, 588, 648, 712, 886
Eam1104I CTCTTC 3 cut(s) 411, 482, 583
EarI CTCTTC 3 cut(s) 411, 482, 583
Eco130I CCWWGG 2 cut(s) 380, 1006
Eco47I GGWCC 3 cut(s) 5, 293, 927
Eco47III AGCGCT 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 276, 879
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 380, 1006
ErhI CCWWGG 2 cut(s) 380, 1006
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 408, 440
FbaI TGATCA 4 cut(s) 184, 613, 619, 625
Fnu4HI GCNGC 2 cut(s) 210, 717
Fsp4HI GCNGC 2 cut(s) 210, 717
FspBI CTAG 5 cut(s) 39, 374, 531, 663, 1007
GlaI GCGC 3 cut(s) 151, 208, 838
GluI GCNGC 2 cut(s) 210, 717
HaeII RGCGCY 3 cut(s) 153, 210, 840
HaeIII GGCC 4 cut(s) 240, 250, 284, 461
HhaI GCGC 3 cut(s) 152, 209, 839
Hin6I GCGC 3 cut(s) 150, 207, 837
HinP1I GCGC 3 cut(s) 150, 207, 837
HinfI GANTC 8 cut(s) 35, 102, 163, 179, 260, 704, 878, 905
HphI GGTGA 2 cut(s) 11, 907
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 5 cut(s) 118, 162, 184, 877, 889
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 387, 480
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 351, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 467, 544, 722
HpyF3I CTNAG 6 cut(s) 318, 356, 588, 648, 712, 886
HpySE526I ACGT 1 cut(s) 555
HspAI GCGC 3 cut(s) 150, 207, 837
Ksp22I TGATCA 4 cut(s) 184, 613, 619, 625
LguI GCTCTTC 1 cut(s) 482
Lsp1109I GCAGC 2 cut(s) 196, 728
LweI GCATC 2 cut(s) 331, 978
MaeI CTAG 5 cut(s) 39, 374, 531, 663, 1007
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 2 cut(s) 32, 971
MflI RGATCY 1 cut(s) 376
MluCI AATT 2 cut(s) 112, 583
MlyI GAGTC 4 cut(s) 29, 111, 254, 872
MmeI TCCRAC 2 cut(s) 151, 576
MseI TTAA 2 cut(s) 366, 1024
MslI CAYNNNNRTG 6 cut(s) 192, 327, 516, 615, 621, 627
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 4 cut(s) 213, 467, 544, 722
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 32, 971
NspI RCATGY 2 cut(s) 521, 735
PagI TCATGA 4 cut(s) 136, 187, 616, 622
PciI ACATGT 1 cut(s) 731
PciSI GCTCTTC 1 cut(s) 482
PctI GAATGC 1 cut(s) 540
PfeI GAWTC 4 cut(s) 163, 179, 704, 905
PkrI GCNGC 2 cut(s) 211, 718
PleI GAGTC 4 cut(s) 29, 110, 254, 872
PpsI GAGTC 4 cut(s) 29, 110, 254, 872
PpuMI RGGWCCY 1 cut(s) 5
PscI ACATGT 1 cut(s) 731
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 5 cut(s) 5, 283, 293, 459, 927
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 736, 912
RsaNI GTAC 2 cut(s) 735, 911
RseI CAYNNNNRTG 6 cut(s) 192, 327, 516, 615, 621, 627
SapI GCTCTTC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 366, 1024
SatI GCNGC 2 cut(s) 210, 717
Sau96I GGNCC 5 cut(s) 5, 283, 293, 459, 927
ScaI AGTACT 1 cut(s) 912
SchI GAGTC 4 cut(s) 29, 111, 254, 872
ScrFI CCNGG 1 cut(s) 483
SetI ASST 9 cut(s) 98, 112, 256, 362, 375, 558, 821, 923, 967
SfaNI GCATC 2 cut(s) 331, 978
SfcI CTRYAG 1 cut(s) 922
SinI GGWCC 3 cut(s) 5, 293, 927
SmiMI CAYNNNNRTG 6 cut(s) 192, 327, 516, 615, 621, 627
Sse9I AATT 2 cut(s) 112, 583
SspMI CTAG 5 cut(s) 39, 374, 531, 663, 1007
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 380, 1006
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 881
TasI AATT 2 cut(s) 112, 583
TatI WGTACW 2 cut(s) 734, 910
TfiI GAWTC 4 cut(s) 163, 179, 704, 905
Tru1I TTAA 2 cut(s) 366, 1024
Tru9I TTAA 2 cut(s) 366, 1024
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 32, 971
TseI GCWGC 2 cut(s) 209, 716
Tsp45I GTSAC 2 cut(s) 32, 971
TspDTI ATGAA 5 cut(s) 125, 192, 717, 918, 985
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 3 cut(s) 5, 293, 927
XceI RCATGY 2 cut(s) 521, 735
XmaJI CCTAGG 1 cut(s) 1006
XspI CTAG 5 cut(s) 39, 374, 531, 663, 1007
ZrmI AGTACT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.