Rorug02G0181100

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001589
Physical Location & Seq
Reverse (-)
16791464 .. 16793362
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0181100.1

Sequence Viewer

Length: 549 bp
ATGGCTCAAGTTTCTGAGCCAGGCCAAAATGAAGAAGTGGAAGATGAAGATGCAATGAATGGAGGGTGTCAGGATTCTAAATCAATCGAATCAACGATTTACCAGAGGTCCAGAGCTGGTGAATTTGGGGTCACTTGCTCAAGCTCTTGGGAAGAAGGAAAGGGGCTGAAGACAGCAGATGATTCTATAGGGTGGGGTTTTGATCATCCTCATCATATAAATTCATCCTACGCTTCTAAGTACTTCTGCCATCAGCATTACCATCTGAACCATCATCCAAATCCAGTCCGAGTGGTGGATACCTTTGGTGAAATAAACCACCGGACTTGGGTGCAAAGACGCGCCAGAGGTTCGAACCTCCGACCTATTACCAGTATCGAAGCAGCGTTCGCCCTGTTTAGAGGCCCATTGGATTGCCATCCGAGCCACACCACATGGGTCCGAGTGGTGGAAACCTTTCTGAAACCTTTACTTCTGTGGAACTCTTTTTTGAATGTTCTGAACGCTGAAGTAAAAGTGACATGGCATTATATTTTGGTAGTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

182

Amino Acids

20.75

Weight (kDa)

6.15

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 342
AcsI RAATTY 2 cut(s) 122, 220
AcuI CTGAAG 2 cut(s) 188, 528
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 295, 328, 448
AgsI TTSAA 1 cut(s) 493
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 2 cut(s) 116, 144
AluI AGCT 2 cut(s) 116, 144
AoxI GGCC 2 cut(s) 22, 403
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 122, 220
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 3 cut(s) 108, 404, 439
AsuHPI GGTGA 2 cut(s) 131, 320
AsuII TTCGAA 1 cut(s) 353
AvaII GGWCC 2 cut(s) 108, 439
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 395
BccI CCATC 4 cut(s) 258, 270, 279, 426
BciT130I CCWGG 1 cut(s) 21
BciVI GTATCC 1 cut(s) 292
BclI TGATCA 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 186
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 2 cut(s) 108, 439
BmgT120I GGNCC 3 cut(s) 108, 404, 439
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 328, 448
Bse1I ACTGG 2 cut(s) 284, 372
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 21
BseGI GGATG 4 cut(s) 205, 224, 274, 418
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 295, 328, 448
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 2 cut(s) 284, 372
BseXI GCAGC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 2 cut(s) 24, 405
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 3 cut(s) 295, 328, 448
BsnI GGCC 2 cut(s) 24, 405
Bsp119I TTCGAA 1 cut(s) 353
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 2 cut(s) 24, 405
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 2 cut(s) 284, 372
BssMI GATC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 15, 237
BstF5I GGATG 4 cut(s) 205, 224, 274, 418
BstFNI CGCG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 389, 423
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 176
BsuI GTATCC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 24, 405
BtsCI GGATG 4 cut(s) 205, 224, 274, 418
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 3 cut(s) 108, 404, 439
CseI GACGC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 2 cut(s) 435, 522
CviJI RGCY 8 cut(s) 5, 19, 24, 116, 144, 166, 405, 426
CviKI_1 RGCY 8 cut(s) 5, 19, 24, 116, 144, 166, 405, 426
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 15, 237
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 108, 439
Eco57I CTGAAG 2 cut(s) 188, 528
EcoRII CCWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 438, 525
FaiI YATR 6 cut(s) 188, 216, 218, 436, 523, 531
FatI CATG 2 cut(s) 434, 521
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 4 cut(s) 192, 211, 261, 405
Fsp4HI GCNGC 1 cut(s) 384
GlaI GCGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 2 cut(s) 24, 405
HapII CCGG 1 cut(s) 322
HgaI GACGC 1 cut(s) 348
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 438, 525
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 3 cut(s) 74, 89, 182
HpaII CCGG 1 cut(s) 322
HphI GGTGA 2 cut(s) 131, 320
Hpy188I TCNGA 8 cut(s) 16, 267, 290, 362, 423, 443, 462, 501
Hpy188III TCNNGA 2 cut(s) 71, 111
HpyAV CCTTC 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 53, 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 423
HpyF3I CTNAG 2 cut(s) 15, 237
Hsp92II CATG 2 cut(s) 438, 525
HspAI GCGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 202
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 40
MaeIII GTNAC 2 cut(s) 130, 517
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 5 cut(s) 44, 53, 59, 164, 181
MluCI AATT 2 cut(s) 122, 220
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 6 cut(s) 56, 99, 219, 341, 368, 395
MroXI GAANNNNTTC 1 cut(s) 456
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 389, 423
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 438, 525
NlaIV GGNNCC 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 130, 517
NspV TTCGAA 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 74, 89, 182
PkrI GCNGC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 3 cut(s) 108, 404, 439
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 3 cut(s) 108, 404, 439
ScaI AGTACT 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 21
SetI ASST 9 cut(s) 110, 118, 146, 305, 352, 360, 367, 458, 469
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 353
SinI GGWCC 2 cut(s) 108, 439
SmlI CTYRAG 2 cut(s) 6, 139
SmoI CTYRAG 2 cut(s) 6, 139
Sse9I AATT 2 cut(s) 122, 220
StyD4I CCNGG 1 cut(s) 19
TaqI TCGA 3 cut(s) 87, 353, 378
TasI AATT 2 cut(s) 122, 220
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 3 cut(s) 74, 89, 182
TseFI GTSAC 2 cut(s) 130, 517
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 2 cut(s) 130, 517
TspDTI ATGAA 4 cut(s) 45, 60, 71, 213
VpaK11BI GGWCC 2 cut(s) 108, 439
XapI RAATTY 2 cut(s) 122, 220
XmnI GAANNNNTTC 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.