RchiOBHm_Chr5g0001131

DNA mismatch repair protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
600654 .. 601149
496 bp
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UTR
Exon/CDS
Intron
PRQ28259

Sequence Viewer

Length: 210 bp
ATGTTTCATGTTCAAACCCTAATCCATCTCCTCTCCGCTTTCTTCACACCCTTTTCCGATCAGTGCGATACTGCTCCAACACTGGAGCTTTCTCAAGAAGAACATGAGGAGCGGAAATCAAGGGCCTTAGCTGCAGCTGCCACGGAGTTGGAAAGACTTCTCAGAAAGGAAGATTTTGGTAGAATGAAAGTTGTTGCTTGCATTAGCTGA

Protein Analysis

69

Amino Acids

7.86

Weight (kDa)

5.5

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 2 cut(s) 36, 112
AgsI TTSAA 1 cut(s) 14
AluBI AGCT 4 cut(s) 88, 131, 137, 207
AluI AGCT 4 cut(s) 88, 131, 137, 207
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 3 cut(s) 131, 134, 137
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 118, 124, 146
BccI CCATC 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 132, 135, 138
BlsI GCNGC 3 cut(s) 133, 136, 139
BmgT120I GGNCC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 20, 122
BseXI GCAGC 3 cut(s) 118, 124, 146
BshFI GGCC 1 cut(s) 125
BsnI GGCC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 2 cut(s) 36, 112
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 127, 161
BstDSI CCRYGG 1 cut(s) 141
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 131, 137
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 118, 124, 146
BstXI CCANNNNNNTGG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 125
BtgI CCRYGG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 68, 80
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 2 cut(s) 8, 104
CviJI RGCY 5 cut(s) 88, 125, 131, 137, 207
CviKI_1 RGCY 5 cut(s) 88, 125, 131, 137, 207
DdeI CTNAG 2 cut(s) 127, 161
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 123
FaeI CATG 2 cut(s) 11, 107
FaiI YATR 2 cut(s) 9, 105
FatI CATG 2 cut(s) 7, 103
Fnu4HI GCNGC 3 cut(s) 132, 135, 138
Fsp4HI GCNGC 3 cut(s) 132, 135, 138
GluI GCNGC 3 cut(s) 132, 135, 138
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 2 cut(s) 11, 107
Hpy188I TCNGA 2 cut(s) 58, 164
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 134, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 137
HpyF3I CTNAG 2 cut(s) 127, 161
Hsp92II CATG 2 cut(s) 11, 107
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 3 cut(s) 79, 85, 109
LpnPI CCDG 1 cut(s) 68
Lsp1109I GCAGC 3 cut(s) 118, 124, 146
MalI GATC 1 cut(s) 60
MbiI CCGCTC 1 cut(s) 112
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 34, 110, 182
MmeI TCCRAC 2 cut(s) 101, 129
MnlI CCTC 2 cut(s) 41, 100
MroXI GAANNNNTTC 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 131, 137
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 11, 107
PdmI GAANNNNTTC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 133, 136, 139
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 137
SatI GCNGC 3 cut(s) 132, 135, 138
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 123
SetI ASST 4 cut(s) 90, 133, 139, 209
SfcI CTRYAG 1 cut(s) 132
SgeI CNNG 6 cut(s) 20, 95, 107, 116, 132, 154
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
SsiI CCGC 2 cut(s) 36, 112
TscAI CASTG 2 cut(s) 68, 87
TseI GCWGC 3 cut(s) 131, 134, 137
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 68, 87
XmnI GAANNNNTTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.