Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Forward (+)

57363734 .. 57364942

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG374700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAATTTATTTTCTTGGTCACTAGCAGGTGCGATACTACTGCAACACTGGAGCTTTCTCAAGCAGAACATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCACGGAGTTGGAAAGACTTTTCAGAAAGGAAGATTTTGGTAGAATGAAGGTGATCGGGCAATTTAATGTTGGCTTCATTGTTGGGAAATTAGATCAAGATTTATTTATAGTAGATCAGCTGAGCATTCTGAGACAAGAGATCAATCAAGAAGTCAATGGTGATGCACAAATTGTGAGGACTCAGGAGTTATGTGTTCAAAATTATGGGAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016020 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032138 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990391 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03430 ko03460 map03430 map03460

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 MutL_C

Protein Analysis

107

Amino Acids

12.25

Weight (kDa)

4.99

Isoelectric Point (pI)

19.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	18
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	4 cut(s)	55, 98, 104, 226
AluI	AGCT	4 cut(s)	55, 98, 104, 226
Alw26I	GTCTC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	98, 101, 104
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	169, 278
BbvI	GCAGC	3 cut(s)	85, 91, 113
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	99, 102, 105
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	3 cut(s)	100, 103, 106
BmgT120I	GGNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	94
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	108
BseMII	CTCAG	3 cut(s)	218, 227, 302
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	85, 91, 113
BshFI	GGCC	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	159, 199, 220, 246
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	3 cut(s)	219, 228, 301
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	159, 199, 220, 246
BstDEI	CTNAG	4 cut(s)	94, 227, 236, 288
BstDSI	CCRYGG	1 cut(s)	108
BstKTI	GATC	4 cut(s)	162, 202, 223, 249
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	159, 199, 220, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 104
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	3 cut(s)	85, 91, 113
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	55, 92, 98, 104, 180, 226
CviKI_1	RGCY	6 cut(s)	55, 92, 98, 104, 180, 226
DdeI	CTNAG	4 cut(s)	94, 227, 236, 288
DpnI	GATC	4 cut(s)	161, 201, 222, 248
DpnII	GATC	4 cut(s)	159, 199, 220, 246
EcoO109I	RGGNCCY	1 cut(s)	90
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	72, 215, 298, 312, 322
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	3 cut(s)	99, 102, 105
Fsp4HI	GCNGC	3 cut(s)	99, 102, 105
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	3 cut(s)	99, 102, 105
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	286
HphI	GGTGA	2 cut(s)	169, 278
Hpy188I	TCNGA	2 cut(s)	131, 237
Hpy188III	TCNNGA	3 cut(s)	203, 254, 290
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	44, 101, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 104
HpyF3I	CTNAG	4 cut(s)	94, 227, 236, 288
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	4 cut(s)	159, 199, 220, 246
LmnI	GCTCC	2 cut(s)	52, 76
LpnPI	CCDG	3 cut(s)	13, 35, 275
Lsp1109I	GCAGC	3 cut(s)	85, 91, 113
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	4 cut(s)	161, 201, 222, 248
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	4 cut(s)	159, 199, 220, 246
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	5 cut(s)	5, 167, 194, 276, 307
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	67, 276, 309
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	104, 226
Mva1269I	GAATGC	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	98, 104
NdeII	GATC	4 cut(s)	159, 199, 220, 246
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	100, 103, 106
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	103
PvuII	CAGCTG	2 cut(s)	104, 226
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	99, 102, 105
Sau3AI	GATC	4 cut(s)	159, 199, 220, 246
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	280
SetI	ASST	7 cut(s)	32, 57, 100, 106, 159, 228, 320
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	5 cut(s)	5, 167, 194, 276, 307
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	24
TasI	AATT	5 cut(s)	5, 167, 194, 276, 307
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	98, 101, 104
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	167, 172
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.