Rh7BG443300

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001589
Physical Location & Seq
Forward (+)
51247633 .. 51249732
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG443300.1

Sequence Viewer

Length: 750 bp
ATGAAGTTCAACATCGCCAACCCCACCACCGGTTGCCAGAAGAAGCTGGAAATCGATGACGACCACAAACTGCGTGCCTTTTTCGACAAGAGGATCTCCCAGGAAGTGAGCGGAGATGCCCTTGGAGAGGAATTTAAGGGATATGTGTTTAAGATTATGGGAGGCTGTGACAAGCAAGGCTTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGAGTTCGCCTCTTGCTCCACCGAGGAACCCCTTGCTTCCGTGGTCACGGAAGGAGGAATGGAGAGAGGAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGCCCTGATCTTTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATCTTCCTGGTTTGACTGACACTGAGAAGCCTAGGATGAGAGGTCCAAAAAGGGCATCTAAAATCCGAAAGCTCTTCAATCTCTCAAAGGAGGATGATGTTCGAAAGTATGTGAACACATACCGTAGATCATTCACATCAAAGACCGGTAAGAAGGTGAGCAAGGCTCCTAAGATTCAGAGGTTGGTCACTCCTTTGACCCTTCAAAGGAAGCGCGCAAGAATTGCAGACAAGAAGAAGAGGGTTGTGAAAGCCAAGTCTGAGGCTGCTGAGTACCAGAAACTCCTTGCCTCACGATTGAAGGAACAAAGAGAACGACGCAGTGAGAGCTTAGCCAAGAAAAGGTCCAGGCTGTCTGCAGCTTCAAAGCCATCTGTTACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

249

Amino Acids

28.29

Weight (kDa)

10.76

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 1.3e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 1 cut(s) 579
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
AgeI ACCGGT 2 cut(s) 29, 509
AgsI TTSAA 5 cut(s) 10, 442, 569, 664, 729
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 4 cut(s) 99, 208, 370, 710
AluBI AGCT 4 cut(s) 46, 436, 693, 725
AluI AGCT 4 cut(s) 46, 436, 693, 725
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 629, 722
ApoI RAATTY 1 cut(s) 131
AsiGI ACCGGT 2 cut(s) 29, 509
AspA2I CCTAGG 1 cut(s) 395
AspLEI GCGC 2 cut(s) 579, 581
AspS9I GGNCC 2 cut(s) 407, 708
AsuHPI GGTGA 2 cut(s) 368, 532
AsuII TTCGAA 1 cut(s) 466
AvaII GGWCC 2 cut(s) 407, 708
AvrII CCTAGG 1 cut(s) 395
BbvI GCAGC 2 cut(s) 616, 734
BccI CCATC 1 cut(s) 742
BciT130I CCWGG 4 cut(s) 101, 210, 372, 712
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 720
BisI GCNGC 2 cut(s) 630, 723
BlnI CCTAGG 1 cut(s) 395
BlpI GCTNAGC 1 cut(s) 694
BlsI GCNGC 2 cut(s) 631, 724
Bme1390I CCNGG 4 cut(s) 101, 210, 372, 712
Bme18I GGWCC 2 cut(s) 407, 708
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 407, 708
BmiI GGNNCC 2 cut(s) 241, 531
BmrFI CCNGG 4 cut(s) 101, 210, 372, 712
BmsI GCATC 2 cut(s) 106, 428
BplI GAGNNNNNCTC 4 cut(s) 207, 239, 514, 546
Bpu1102I GCTNAGC 1 cut(s) 694
Bpu14I TTCGAA 1 cut(s) 466
Bsa29I ATCGAT 1 cut(s) 54
BsaJI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BsaWI WCCGGW 2 cut(s) 29, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
Bse118I RCCGGY 2 cut(s) 29, 509
BseBI CCWGG 4 cut(s) 101, 210, 372, 712
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BseGI GGATG 2 cut(s) 405, 463
BseLI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
BseMII CTCAG 3 cut(s) 378, 615, 624
BsePI GCGCGC 1 cut(s) 577
BseRI GAGGAG 2 cut(s) 295, 298
BseXI GCAGC 2 cut(s) 616, 734
Bsh1236I CGCG 1 cut(s) 579
BshTI ACCGGT 2 cut(s) 29, 509
BshVI ATCGAT 1 cut(s) 54
BsiSI CCGG 2 cut(s) 30, 510
BslI CCNNNNNNNGG 4 cut(s) 29, 127, 570, 705
Bsp119I TTCGAA 1 cut(s) 466
Bsp143I GATC 4 cut(s) 93, 319, 364, 491
Bsp1720I GCTNAGC 1 cut(s) 694
BspACI CCGC 1 cut(s) 111
BspCNI CTCAG 3 cut(s) 379, 616, 625
BspDI ATCGAT 1 cut(s) 54
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 241, 531
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 29, 509
BssAI RCCGGY 2 cut(s) 29, 509
BssECI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BssHII GCGCGC 1 cut(s) 577
BssMI GATC 4 cut(s) 93, 319, 364, 491
BssT1I CCWWGG 2 cut(s) 121, 395
Bst2UI CCWGG 4 cut(s) 101, 210, 372, 712
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 2 cut(s) 443, 596
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 75, 579
BstDEI CTNAG 5 cut(s) 387, 534, 624, 633, 694
BstDSI CCRYGG 2 cut(s) 253, 298
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 405, 463
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 2 cut(s) 579, 581
BstKTI GATC 4 cut(s) 96, 322, 367, 494
BstMBI GATC 4 cut(s) 93, 319, 364, 491
BstMWI GCNNNNNNNGC 3 cut(s) 312, 587, 690
BstNI CCWGG 4 cut(s) 101, 210, 372, 712
BstSCI CCNGG 4 cut(s) 99, 208, 370, 710
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 616, 734
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 2 cut(s) 253, 298
BtsCI GGATG 2 cut(s) 405, 463
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 2 cut(s) 384, 691
Cac8I GCNNGC 2 cut(s) 75, 579
CfoI GCGC 2 cut(s) 579, 581
Cfr10I RCCGGY 2 cut(s) 29, 509
Cfr13I GGNCC 2 cut(s) 407, 708
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 1 cut(s) 690
Csp6I GTAC 1 cut(s) 637
CspAI ACCGGT 2 cut(s) 29, 509
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 5 cut(s) 387, 534, 624, 633, 694
DpnI GATC 4 cut(s) 95, 321, 366, 493
DpnII GATC 4 cut(s) 93, 319, 364, 491
DriI GACNNNNNGTC 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 443, 596
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 2 cut(s) 443, 596
Eco130I CCWWGG 2 cut(s) 121, 395
Eco47I GGWCC 2 cut(s) 407, 708
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 99, 208, 370, 710
EcoT14I CCWWGG 2 cut(s) 121, 395
ErhI CCWWGG 2 cut(s) 121, 395
FaiI YATR 4 cut(s) 144, 158, 474, 484
FalI AAGNNNNNCTT 2 cut(s) 164, 196
Fnu4HI GCNGC 2 cut(s) 630, 723
FokI GGATG 2 cut(s) 412, 470
Fsp4HI GCNGC 2 cut(s) 630, 723
FspBI CTAG 1 cut(s) 396
GlaI GCGC 2 cut(s) 578, 580
GluI GCNGC 2 cut(s) 630, 723
HapII CCGG 2 cut(s) 30, 510
HgaI GACGC 1 cut(s) 690
HhaI GCGC 2 cut(s) 579, 581
Hin6I GCGC 2 cut(s) 577, 579
HinP1I GCGC 2 cut(s) 577, 579
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 1 cut(s) 538
HpaII CCGG 2 cut(s) 30, 510
HphI GGTGA 2 cut(s) 368, 532
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 4 cut(s) 333, 431, 543, 625
Hpy188III TCNNGA 1 cut(s) 657
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 1 cut(s) 684
HpyAV CCTTC 5 cut(s) 258, 346, 511, 575, 658
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 306, 590, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 587, 690
HpyF3I CTNAG 5 cut(s) 387, 534, 624, 633, 694
HspAI GCGC 2 cut(s) 577, 579
Kzo9I GATC 4 cut(s) 93, 319, 364, 491
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 2 cut(s) 234, 535
Lsp1109I GCAGC 2 cut(s) 616, 734
LweI GCATC 2 cut(s) 106, 428
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 5 cut(s) 167, 257, 356, 550, 739
MalI GATC 4 cut(s) 95, 321, 366, 493
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 93, 319, 364, 491
MboII GAAGA 6 cut(s) 52, 359, 361, 430, 610, 613
MflI RGATCY 1 cut(s) 93
MluCI AATT 2 cut(s) 131, 585
MseI TTAA 3 cut(s) 135, 150, 748
MspI CCGG 2 cut(s) 30, 510
MspR9I CCNGG 4 cut(s) 101, 210, 372, 712
MvaI CCWGG 4 cut(s) 101, 210, 372, 712
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 312, 587, 690
NdeII GATC 4 cut(s) 93, 319, 364, 491
NlaIV GGNNCC 2 cut(s) 241, 531
NmuCI GTSAC 4 cut(s) 167, 257, 356, 550
NspV TTCGAA 1 cut(s) 466
PauI GCGCGC 1 cut(s) 577
PciSI GCTCTTC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 538
PinAI ACCGGT 2 cut(s) 29, 509
PkrI GCNGC 2 cut(s) 631, 724
Psp6I CCWGG 4 cut(s) 99, 208, 370, 710
PspGI CCWGG 4 cut(s) 99, 208, 370, 710
PspN4I GGNNCC 2 cut(s) 241, 531
PspPI GGNCC 2 cut(s) 407, 708
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 93
PteI GCGCGC 1 cut(s) 577
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 3 cut(s) 135, 150, 748
SatI GCNGC 2 cut(s) 630, 723
Sau3AI GATC 4 cut(s) 93, 319, 364, 491
Sau96I GGNCC 2 cut(s) 407, 708
ScrFI CCNGG 4 cut(s) 101, 210, 372, 712
SetI ASST 8 cut(s) 48, 409, 438, 522, 548, 695, 710, 727
SfaNI GCATC 2 cut(s) 106, 428
SfcI CTRYAG 1 cut(s) 720
SfuI TTCGAA 1 cut(s) 466
SinI GGWCC 2 cut(s) 407, 708
Sse9I AATT 2 cut(s) 131, 585
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 99, 208, 370, 710
StyI CCWWGG 2 cut(s) 121, 395
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 4 cut(s) 54, 84, 214, 466
TasI AATT 2 cut(s) 131, 585
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 3 cut(s) 135, 150, 748
Tru9I TTAA 3 cut(s) 135, 150, 748
TscAI CASTG 2 cut(s) 391, 691
TseFI GTSAC 4 cut(s) 167, 257, 356, 550
TseI GCWGC 2 cut(s) 629, 722
Tsp45I GTSAC 4 cut(s) 167, 257, 356, 550
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 3 cut(s) 242, 276, 287
TspRI CASTG 2 cut(s) 391, 691
VpaK11BI GGWCC 2 cut(s) 407, 708
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.