Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Forward (+)

65675801 .. 65677896

Gene Structure 2096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG473400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGAGGCTGTGACAAGCAAGGGTTCCCGATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTCCACCGAGGAACCCCCTGCTTCCGTGGTCACGGAAGGAGGAACGGAGAGAGGAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGTCCTGATCTTTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATCTTCCTGGTTTGACTGACACTGAGAAGCCTAGGATGAGAGGTCCCAAGAGGGCATCTAAGATCCGAAAGCTCTTCAATCTCTCGAAGGAGGATGATGTTCGAAAGTATGTGAACACATACCGTAGATCATTCACATCAAAGACTGGTAAGAAGGTGAGCAAGGCTCCTAAGATTCAGAGGTTAGTCACTCCTTTGACCCTTCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGGGTTGTGAAAGCCAAGTCTGAGGCTGCTGAGTACCAGAAACTCCTCGCCTCAAGATTGAAGGAACAAAGAGAACGACGCAGTGAGAGCTTGGCCAAGAAAAGGTCCAGGCTGTCTGCAGCTTCAAAGCCGTCTATTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Ribosomal_S6e

Protein Analysis

197

Amino Acids

22.35

Weight (kDa)

11.44

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6e	PF01092	1 - 76	4.6e-29	Ribosomal protein S6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	540
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	2 cut(s)	414, 549
AgsI	TTSAA	4 cut(s)	286, 413, 508, 573
AhdI	GACNNNNNGTC	1 cut(s)	54
AjnI	CCWGG	3 cut(s)	52, 214, 554
AluBI	AGCT	3 cut(s)	280, 537, 569
AluI	AGCT	3 cut(s)	280, 537, 569
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	2 cut(s)	473, 566
AspA2I	CCTAGG	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	251, 552
AsuHPI	GGTGA	2 cut(s)	212, 376
AsuII	TTCGAA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	251, 552
AvrII	CCTAGG	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	542
BbvI	GCAGC	2 cut(s)	460, 578
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	3 cut(s)	54, 216, 556
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	2 cut(s)	474, 567
BlnI	CCTAGG	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	475, 568
Bme1390I	CCNGG	3 cut(s)	54, 216, 556
Bme18I	GGWCC	2 cut(s)	251, 552
BmeRI	GACNNNNNGTC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	251, 552
BmiI	GGNNCC	4 cut(s)	26, 85, 253, 375
BmrFI	CCNGG	3 cut(s)	54, 216, 556
BmsI	GCATC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	484
BsaJI	CCNNGG	5 cut(s)	52, 79, 97, 142, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 549
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	54, 216, 556
BseDI	CCNNGG	5 cut(s)	52, 79, 97, 142, 239
BseGI	GGATG	2 cut(s)	249, 307
BseLI	CCNNNNNNNGG	2 cut(s)	414, 549
BseMII	CTCAG	3 cut(s)	222, 459, 468
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	3 cut(s)	139, 142, 482
BseXI	GCAGC	2 cut(s)	460, 578
BshFI	GGCC	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	414, 549
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	163, 208, 270, 335
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	3 cut(s)	223, 460, 469
BspLI	GGNNCC	4 cut(s)	26, 85, 253, 375
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	5 cut(s)	52, 79, 97, 142, 239
BssMI	GATC	4 cut(s)	163, 208, 270, 335
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	3 cut(s)	54, 216, 556
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	287, 440
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	6 cut(s)	231, 267, 378, 468, 477, 591
BstDSI	CCRYGG	2 cut(s)	97, 142
BstF5I	GGATG	2 cut(s)	249, 307
BstKTI	GATC	4 cut(s)	166, 211, 273, 338
BstMBI	GATC	4 cut(s)	163, 208, 270, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 534
BstNI	CCWGG	3 cut(s)	54, 216, 556
BstSCI	CCNGG	3 cut(s)	52, 214, 554
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	460, 578
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	2 cut(s)	97, 142
BtsCI	GGATG	2 cut(s)	249, 307
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	228, 535
Cac8I	GCNNGC	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	251, 552
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	481
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	6 cut(s)	231, 267, 378, 468, 477, 591
DpnI	GATC	4 cut(s)	165, 210, 272, 337
DpnII	GATC	4 cut(s)	163, 208, 270, 335
DriI	GACNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	287, 440
Eam1105I	GACNNNNNGTC	1 cut(s)	54
EarI	CTCTTC	2 cut(s)	287, 440
Eco130I	CCWWGG	1 cut(s)	239
Eco47I	GGWCC	2 cut(s)	251, 552
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	52, 214, 554
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaiI	YATR	2 cut(s)	318, 328
FaqI	GGGAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	474, 567
FokI	GGATG	2 cut(s)	256, 314
Fsp4HI	GCNGC	2 cut(s)	474, 567
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	2 cut(s)	474, 567
HaeIII	GGCC	1 cut(s)	542
HgaI	GACGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	2 cut(s)	212, 376
Hpy166II	GTNNAC	2 cut(s)	48, 322
Hpy188I	TCNGA	4 cut(s)	177, 275, 387, 469
Hpy188III	TCNNGA	4 cut(s)	28, 161, 292, 501
Hpy8I	GTNNAC	2 cut(s)	48, 322
Hpy99I	CGWCG	1 cut(s)	528
HpyAV	CCTTC	6 cut(s)	102, 190, 289, 355, 419, 502
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	4 cut(s)	150, 425, 434, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 534
HpyF3I	CTNAG	6 cut(s)	231, 267, 378, 468, 477, 591
Kzo9I	GATC	4 cut(s)	163, 208, 270, 335
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	2 cut(s)	78, 379
Lsp1109I	GCAGC	2 cut(s)	460, 578
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	240
MaeIII	GTNAC	4 cut(s)	11, 101, 200, 394
MalI	GATC	4 cut(s)	165, 210, 272, 337
MboI	GATC	4 cut(s)	163, 208, 270, 335
MboII	GAAGA	5 cut(s)	203, 205, 274, 454, 457
MflI	RGATCY	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	542
Mox20I	TGGCCA	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	542
MspR9I	CCNGG	3 cut(s)	54, 216, 556
MvaI	CCWGG	3 cut(s)	54, 216, 556
MwoI	GCNNNNNNNGC	2 cut(s)	431, 534
NdeII	GATC	4 cut(s)	163, 208, 270, 335
NlaIV	GGNNCC	4 cut(s)	26, 85, 253, 375
NmuCI	GTSAC	4 cut(s)	11, 101, 200, 394
NspV	TTCGAA	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	475, 568
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	52, 214, 554
PspGI	CCWGG	3 cut(s)	52, 214, 554
PspN4I	GGNNCC	4 cut(s)	26, 85, 253, 375
PspPI	GGNCC	2 cut(s)	251, 552
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SapI	GCTCTTC	1 cut(s)	287
SatI	GCNGC	2 cut(s)	474, 567
Sau3AI	GATC	4 cut(s)	163, 208, 270, 335
Sau96I	GGNCC	2 cut(s)	251, 552
ScrFI	CCNGG	3 cut(s)	54, 216, 556
SetI	ASST	7 cut(s)	253, 282, 366, 392, 539, 554, 571
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	564
SfuI	TTCGAA	1 cut(s)	310
SinI	GGWCC	2 cut(s)	251, 552
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	1 cut(s)	429
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	52, 214, 554
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	293, 310
TasI	AATT	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	2 cut(s)	235, 535
TseFI	GTSAC	4 cut(s)	11, 101, 200, 394
TseI	GCWGC	2 cut(s)	473, 566
Tsp45I	GTSAC	4 cut(s)	11, 101, 200, 394
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	4 cut(s)	86, 120, 131, 132
TspRI	CASTG	2 cut(s)	235, 535
VpaK11BI	GGWCC	2 cut(s)	251, 552
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.