Rw6G032660

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001589
Physical Location & Seq
Forward (+)
56854084 .. 56862770
8687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032660.1

Sequence Viewer

Length: 762 bp
ATGAAAGATTTTTCACAACCCAAAAAACAGTGTGATTGGAGACTTTCAATATATCGAGCAAAAGGGAAACTGAGCATTCTGAGACAAGAGATCAATCAAGAAGTCAATGGTGATGCACAAATTGTGAGGAGTTATGTGTTCAAAATTATGGGAGGTTATGACAAGAAATTGTTTCCTTCGAAGCAAGGAGTGTTAACCCTAGGGTGTGTTCGCCTTTTGCTCCATAGGGATATAAGGAAGTTTGTTCATGGATGCATTATTAGTCCAGATCTTTTCGTGTTGAACTTGGTCATTGTTAAGAAAGGTGACTATGACCTTCCTGGACTGACTGATGTTGAAAAGCCAACAGTGAGAGGTCCAAAGAGGGCTTCCAAGATCCACAAGCTATTTAACCTTACCAAGGACGATGATGTTAGGAAGTATAATGCAAGGAGCGAATTGCTTCGCCGGACTACCACACCAACCTTGCAGCAAGCCTTTGCTTATATTCGCAAAGATGAGACCCATAGGGCTGGAACTAGAGTAGTTACTTCAGAAGTTGCAGGCCTTGCAATACAATCAAAGCCACCCAATCCCTCAAGTAATCGGTCACTCTCAGGCAATCGGCCTCCTTCTTCTCTGCGTCTCTCTCCTCAAGGTCCTCCTCCAAGGTTTTCCTCAAATTTGACTTGTAATTACTGCAAGAATCCAGACCACATCAAAGCAAATTGTTACAGGTTAGTCGGTTTTCCAGCAGGCTACTTTGATAGTCCTCGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

253

Amino Acids

28.6

Weight (kDa)

10.04

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 5 - 111 1e-15 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 370
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 4 cut(s) 48, 142, 283, 338
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw26I GTCTC 4 cut(s) 34, 76, 494, 629
AlwI GGATC 1 cut(s) 370
AoxI GGCC 2 cut(s) 544, 605
ApeKI GCWGC 1 cut(s) 469
ApoI RAATTY 1 cut(s) 661
Asp700I GAANNNNTTC 1 cut(s) 441
AspA2I CCTAGG 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 356, 638
AsuHPI GGTGA 2 cut(s) 122, 317
AsuII TTCGAA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 356, 638
AvrII CCTAGG 1 cut(s) 199
BbvI GCAGC 1 cut(s) 481
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 4 cut(s) 34, 76, 494, 629
BfaI CTAG 2 cut(s) 200, 519
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 470
BlnI CCTAGG 1 cut(s) 199
BlsI GCNGC 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 2 cut(s) 356, 638
BmgT120I GGNCC 2 cut(s) 356, 638
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 103, 242
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 562, 618
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 199, 399, 647
Bsc4I CCNNNNNNNGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 3 cut(s) 199, 399, 647
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 62, 71, 609
BseRI GAGGAG 3 cut(s) 142, 621, 633
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 2 cut(s) 546, 607
BsiSI CCGG 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 4 cut(s) 34, 76, 494, 629
BsmBI CGTCTC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 546, 607
Bso31I GGTCTC 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 179
Bsp143I GATC 3 cut(s) 90, 268, 375
BspANI GGCC 2 cut(s) 546, 607
BspCNI CTCAG 3 cut(s) 63, 72, 608
BspPI GGATC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 494
BssECI CCNNGG 3 cut(s) 199, 399, 647
BssMI GATC 3 cut(s) 90, 268, 375
BssT1I CCWWGG 3 cut(s) 199, 399, 647
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 30, 349
BstAPI GCANNNNNTGC 1 cut(s) 548
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 474, 544, 736
BstDEI CTNAG 4 cut(s) 71, 80, 595, 759
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 3 cut(s) 93, 271, 378
BstMAI GTCTC 4 cut(s) 34, 76, 494, 629
BstMBI GATC 3 cut(s) 90, 268, 375
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 2 cut(s) 268, 375
BstXI CCANNNNNNTGG 1 cut(s) 512
BstYI RGATCY 2 cut(s) 268, 375
BsuRI GGCC 2 cut(s) 546, 607
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 35, 354
Cac8I GCNNGC 3 cut(s) 474, 544, 736
Cfr13I GGNCC 2 cut(s) 356, 638
CseI GACGC 1 cut(s) 611
CviAII CATG 1 cut(s) 248
CviJI RGCY 9 cut(s) 343, 368, 385, 476, 512, 546, 565, 607, 738
CviKI_1 RGCY 9 cut(s) 343, 368, 385, 476, 512, 546, 565, 607, 738
DdeI CTNAG 4 cut(s) 71, 80, 595, 759
DpnI GATC 3 cut(s) 92, 270, 377
DpnII GATC 3 cut(s) 90, 268, 375
Eco130I CCWWGG 3 cut(s) 199, 399, 647
Eco147I AGGCCT 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 494
Eco47I GGWCC 2 cut(s) 356, 638
Eco57I CTGAAG 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 3 cut(s) 199, 399, 647
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 3 cut(s) 199, 399, 647
Esp3I CGTCTC 1 cut(s) 629
FaeI CATG 1 cut(s) 251
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 470
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 470
FspBI CTAG 2 cut(s) 200, 519
GluI GCNGC 1 cut(s) 470
HaeIII GGCC 2 cut(s) 546, 607
HapII CCGG 1 cut(s) 448
HgaI GACGC 1 cut(s) 611
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 1 cut(s) 685
HpaI GTTAAC 1 cut(s) 195
HpaII CCGG 1 cut(s) 448
HphI GGTGA 2 cut(s) 122, 317
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 81, 535
Hpy188III TCNNGA 3 cut(s) 98, 266, 689
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 186, 326, 621
HpyCH4III ACNGT 2 cut(s) 30, 349
HpyCH4V TGCA 7 cut(s) 116, 255, 428, 469, 542, 551, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 4 cut(s) 71, 80, 595, 759
Hsp92II CATG 1 cut(s) 251
KspAI GTTAAC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 90, 268, 375
LmnI GCTCC 2 cut(s) 225, 432
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 2 cut(s) 103, 242
MaeI CTAG 2 cut(s) 200, 519
MaeIII GTNAC 4 cut(s) 305, 526, 588, 710
MalI GATC 3 cut(s) 92, 270, 377
MboI GATC 3 cut(s) 90, 268, 375
MboII GAAGA 1 cut(s) 606
MflI RGATCY 2 cut(s) 268, 375
MluCI AATT 7 cut(s) 120, 144, 167, 437, 661, 673, 706
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 3 cut(s) 194, 297, 390
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeII GATC 3 cut(s) 90, 268, 375
NlaIII CATG 1 cut(s) 251
NmuCI GTSAC 2 cut(s) 305, 588
NsiI ATGCAT 1 cut(s) 257
NspV TTCGAA 1 cut(s) 179
PceI AGGCCT 1 cut(s) 546
PctI GAATGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 1 cut(s) 471
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspPI GGNCC 2 cut(s) 356, 638
PspPPI RGGWCCY 1 cut(s) 638
PsuI RGATCY 2 cut(s) 268, 375
SaqAI TTAA 3 cut(s) 194, 297, 390
SatI GCNGC 1 cut(s) 470
Sau3AI GATC 3 cut(s) 90, 268, 375
Sau96I GGNCC 2 cut(s) 356, 638
ScrFI CCNGG 1 cut(s) 321
SfaNI GCATC 2 cut(s) 103, 242
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 2 cut(s) 356, 638
SmlI CTYRAG 2 cut(s) 577, 633
SmoI CTYRAG 2 cut(s) 577, 633
Sse9I AATT 7 cut(s) 120, 144, 167, 437, 661, 673, 706
SseBI AGGCCT 1 cut(s) 546
SspMI CTAG 2 cut(s) 200, 519
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 3 cut(s) 199, 399, 647
TaaI ACNGT 2 cut(s) 30, 349
TaqI TCGA 3 cut(s) 55, 179, 754
TaqII GACCGA 1 cut(s) 576
TasI AATT 7 cut(s) 120, 144, 167, 437, 661, 673, 706
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 3 cut(s) 194, 297, 390
Tru9I TTAA 3 cut(s) 194, 297, 390
TscAI CASTG 2 cut(s) 35, 354
TseFI GTSAC 2 cut(s) 305, 588
TseI GCWGC 1 cut(s) 469
Tsp45I GTSAC 2 cut(s) 305, 588
TspDTI ATGAA 2 cut(s) 17, 236
TspRI CASTG 2 cut(s) 35, 354
VpaK11BI GGWCC 2 cut(s) 356, 638
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 1 cut(s) 661
XmaJI CCTAGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 2 cut(s) 200, 519
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.