Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001589

Physical Location & Seq

Genomic Coordinates Reverse (-)

3258404 .. 3260254

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAGTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGACGATCAAAAACTCCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTCCGTGGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTTGGTCATTGTGAAGAAGGGTGTAAGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGGCATCAAAGATCCGCAAGTTGTTTAACCTTGGAAAAGAGGATGATGTGAGGAAGTACGTTAACACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGCCAAGGCTAACTCTGATGCAGCTGATTACCAGAAGCTTCTTGCCTCCAGACTAAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGACTCTCTTCTGCTCCTGCTAAACCCGTTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042274 GO:0042788 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Ribosomal_S6e

Protein Analysis

249

Amino Acids

28.16

Weight (kDa)

10.83

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6e	PF01092	1 - 121	5.6e-51	Ribosomal protein S6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31700 AT4G31700 AT5G10360 AT5G10360
fragaria_vesca	FvH4_1g20340 FvH4_5g36790 FvH4_5g36790
malus_domestica	MD08G1186900.v1.1 MD15G1372800.v1.1
prunus_persica	Prupe.1G521400_v2.0.a1 Prupe.1G521400_v2.0.a1 Prupe.6G192100_v2.0.a1
pyrus_communis	pycom08g16070 pycom15g33380
rosa_chinensis	RchiOBHm_Chr1g0378681 RchiOBHm_Chr2g0112471 RchiOBHm_Chr5g0001121 RchiOBHm_Chr5g0001131 RchiOBHm_Chr7g0242901
rosa_laevigata	RLG00000000869 RLG00000017983 RLG00000024778
rosa_multiflora	Rmu_sc0000556.1_g000006 Rmu_sc0001706.1_g000036 Rmu_sc0001758.1_g000027 Rmu_sc0004165.1_g000057
rosa_roxburghii	Rroxscaffold_2G00131400 Rroxscaffold_3G00222260 Rroxscaffold_4G00307670 Rroxscaffold_6G00413940
rosa_rugosa	Rorug02G0106700 Rorug02G0181100 Rorug07G0291700 Rorug07G0317600 Rorug07G0317700
rosa_samantha	Rh2DG241800 Rh5BG035200 Rh5CG009600 Rh6AG374700 Rh7AG084600 Rh7AG473400 Rh7BG443300 Rh7CG085600 Rh7CG490300 Rh7DG086700 Rh7DG458600
rosa_wichuraiana	Rw2G018140 Rw6G032660 Rw7G039080 Rw7G039370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	4 cut(s)	73, 111, 430, 487
AclWI	GGATC	2 cut(s)	421, 532
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	3 cut(s)	241, 473, 493
AfiI	CCNNNNNNNGG	3 cut(s)	29, 570, 705
AgsI	TTSAA	3 cut(s)	10, 136, 151
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	581, 632, 646
AluI	AGCT	3 cut(s)	581, 632, 646
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	421, 532
Ama87I	CYCGRG	2 cut(s)	47, 371
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	3 cut(s)	629, 670, 743
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	3 cut(s)	31, 372, 373
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	2 cut(s)	47, 371
AvaII	GGWCC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	475, 508
BalI	TGGCCA	1 cut(s)	698
BanII	GRGCYC	1 cut(s)	317
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbvI	GCAGC	3 cut(s)	641, 682, 730
BceAI	ACGGC	2 cut(s)	474, 666
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	134
BcnI	CCSGG	3 cut(s)	31, 372, 373
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	3 cut(s)	122, 582, 711
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	630, 671, 744
BlsI	GCNGC	3 cut(s)	631, 672, 745
Bme1390I	CCNGG	4 cut(s)	31, 210, 372, 373
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	2 cut(s)	47, 371
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	409, 531
BmrFI	CCNGG	4 cut(s)	31, 210, 372, 373
BmsI	GCATC	3 cut(s)	106, 428, 616
BoxI	GACNNNNGTC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	4 cut(s)	192, 294, 551, 640
BpuMI	CCSGG	3 cut(s)	31, 372, 373
Bsa29I	ATCGAT	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	209, 235, 298, 371, 445, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 570, 705
Bse1I	ACTGG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	54
BseDI	CCNNGG	6 cut(s)	209, 235, 298, 371, 445, 612
BseGI	GGATG	2 cut(s)	170, 463
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	29, 570, 705
BseMII	CTCAG	2 cut(s)	113, 378
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	641, 682, 730
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	698
BshVI	ATCGAT	1 cut(s)	54
BsiHKCI	CYCGRG	2 cut(s)	47, 371
BsiSI	CCGG	2 cut(s)	30, 372
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	3 cut(s)	29, 570, 705
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	698
BsoBI	CYCGRG	2 cut(s)	47, 371
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
BspACI	CCGC	4 cut(s)	73, 111, 430, 487
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	2 cut(s)	112, 379
BspDI	ATCGAT	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	409, 531
BspPI	GGATC	2 cut(s)	421, 532
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	6 cut(s)	209, 235, 298, 371, 445, 612
BssMI	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
BssT1I	CCWWGG	2 cut(s)	445, 612
Bst2UI	CCWGG	1 cut(s)	210
Bst6I	CTCTTC	4 cut(s)	569, 596, 698, 724
BstBAI	YACGTR	1 cut(s)	145
BstDEI	CTNAG	3 cut(s)	99, 387, 534
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	170, 463
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	7 cut(s)	54, 64, 156, 367, 429, 540, 679
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 587
BstNI	CCWGG	1 cut(s)	210
BstPAI	GACNNNNGTC	1 cut(s)	289
BstSCI	CCNGG	4 cut(s)	29, 208, 370, 371
BstSNI	TACGTA	1 cut(s)	145
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	641, 682, 730
BstX2I	RGATCY	2 cut(s)	426, 537
BstYI	RGATCY	2 cut(s)	426, 537
Bsu15I	ATCGAT	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	698
BsuTUI	ATCGAT	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	170, 463
BtsIMutI	CAGTG	1 cut(s)	384
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	407
Cfr9I	CCCGGG	1 cut(s)	371
ClaI	ATCGAT	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	240, 472, 492
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	3 cut(s)	240, 472, 492
DdeI	CTNAG	3 cut(s)	99, 387, 534
DpnI	GATC	7 cut(s)	53, 63, 155, 366, 428, 539, 678
DpnII	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
DraIII	CACNNNGTG	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	4 cut(s)	569, 596, 698, 724
EarI	CTCTTC	4 cut(s)	569, 596, 698, 724
Eco105I	TACGTA	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	445, 612
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	47, 371
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	445, 612
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	445, 612
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	630, 671, 744
FokI	GGATG	2 cut(s)	177, 470
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	630, 671, 744
FspBI	CTAG	3 cut(s)	122, 582, 711
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	630, 671, 744
GsuI	CTGGAG	4 cut(s)	192, 294, 551, 640
HaeIII	GGCC	1 cut(s)	698
HapII	CCGG	2 cut(s)	30, 372
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	3 cut(s)	553, 606, 714
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	30, 372
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	2 cut(s)	24, 625
Hpy188III	TCNNGA	7 cut(s)	49, 101, 151, 541, 568, 657, 711
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	5 cut(s)	258, 346, 502, 505, 511
HpyCH4IV	ACGT	3 cut(s)	12, 144, 474
HpyCH4V	TGCA	2 cut(s)	306, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 587
HpyF3I	CTNAG	3 cut(s)	99, 387, 534
HpySE526I	ACGT	3 cut(s)	12, 144, 474
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	75
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
LmnI	GCTCC	3 cut(s)	535, 667, 730
Lsp1109I	GCAGC	3 cut(s)	641, 682, 730
LweI	GCATC	3 cut(s)	106, 428, 616
MaeI	CTAG	3 cut(s)	122, 582, 711
MaeII	ACGT	3 cut(s)	12, 144, 474
MaeIII	GTNAC	2 cut(s)	167, 550
MalI	GATC	7 cut(s)	53, 63, 155, 366, 428, 539, 678
MboI	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
MboII	GAAGA	7 cut(s)	359, 361, 586, 610, 613, 711, 715
MflI	RGATCY	2 cut(s)	426, 537
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	2 cut(s)	131, 585
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	2 cut(s)	547, 708
MmeI	TCCRAC	1 cut(s)	47
Mox20I	TGGCCA	1 cut(s)	698
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	4 cut(s)	333, 441, 477, 748
Msp20I	TGGCCA	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	2 cut(s)	30, 372
MspR9I	CCNGG	4 cut(s)	31, 210, 372, 373
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	312, 587
NciI	CCSGG	3 cut(s)	31, 372, 373
NdeII	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	409, 531
NmuCI	GTSAC	2 cut(s)	167, 550
PaeR7I	CTCGAG	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	606
PkrI	GCNGC	3 cut(s)	631, 672, 745
PleI	GAGTC	2 cut(s)	547, 708
PpsI	GAGTC	2 cut(s)	547, 708
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	407
PshAI	GACNNNNGTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	409, 531
PspPI	GGNCC	1 cut(s)	407
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	426, 537
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	241, 473, 493
RsaNI	GTAC	3 cut(s)	240, 472, 492
SaqAI	TTAA	4 cut(s)	333, 441, 477, 748
SatI	GCNGC	3 cut(s)	630, 671, 744
Sau3AI	GATC	7 cut(s)	51, 61, 153, 364, 426, 537, 676
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	547, 708
ScrFI	CCNGG	4 cut(s)	31, 210, 372, 373
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	106, 428, 616
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	47
SmaI	CCCGGG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SnaBI	TACGTA	1 cut(s)	145
Sse9I	AATT	2 cut(s)	131, 585
SsiI	CCGC	4 cut(s)	73, 111, 430, 487
SspMI	CTAG	3 cut(s)	122, 582, 711
StyD4I	CCNGG	4 cut(s)	29, 208, 370, 371
StyI	CCWWGG	2 cut(s)	445, 612
TaiI	ACGT	3 cut(s)	15, 147, 477
TaqI	TCGA	3 cut(s)	48, 54, 84
TasI	AATT	2 cut(s)	131, 585
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	4 cut(s)	333, 441, 477, 748
Tru9I	TTAA	4 cut(s)	333, 441, 477, 748
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	167, 550
TseI	GCWGC	3 cut(s)	629, 670, 743
Tsp45I	GTSAC	2 cut(s)	167, 550
TspDTI	ATGAA	2 cut(s)	17, 203
TspGWI	ACGGA	3 cut(s)	209, 276, 287
TspMI	CCCGGG	1 cut(s)	371
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	710
XhoI	CTCGAG	1 cut(s)	47
XmaI	CCCGGG	1 cut(s)	371
XspI	CTAG	3 cut(s)	122, 582, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.