Prupe.1G521400_v2.0.a1

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001589
Physical Location & Seq
Reverse (-)
42764094 .. 42766612
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G521400.1

Sequence Viewer

Length: 750 bp
ATGAAGTTCAACATCGCCAACCCCACCACTGGTTGCCAGAAGAAGCTCGAAATCGACGATGACCACAAACTGCGAGCATTTTTTGACAAGAGAATCTCCCAGGAGGTCAGCGGCGATGCTCTTGGAGAGGAATTTAAGGGATATGTCTTCAAGATTATGGGAGGATGTGACAAGCAAGGGTTTCCAATGAAGCAGGGAGTGTTGACCCCCGGCCGTGTTCGCCTCTTGCTACACAGAGGAACCCCTTGCTTCCGTGGTTATGGAAGGAGGAATGGTGAGAGGAGGAGAAAGTCTGTCCGTGGTTGCATTGTCAGCCCTGACCTTTCTGTTTTGAACTTGGTGATTGTGAAGAAGGGTGAAAGTGACCTTCCTGGATTGACTGACACTGAGAAACCTAGGATGAGAGGTCCCAAGAGGGCTTCTAAGATCCGTAAACTCTTCAATCTCTCAAAGGTTGATGATGTTCGGAAGTATGTCAACACATACCGAAGATCATTTACATCAAAGACTGGCAAGAAGGTGAGTAAAGCTCCCAAGATTCAGAGACTTGTCACCCCACTGACCCTGCAAAGGAAGCGGGCAAGAATTGCAGACAAGAAGAAGAGGGTTGCAAAGGCCAAGTCTGAGGCTGCTGAGTACCAGAAACTCCTTGCCTCAAGATTGAAGGAACAAAGGGATCGACGAAGTGAGAGTTTAGCCAAGAAGAGGTCCAGGCTCTCTGCTGCCTCAAAGCCATCTATTGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

250

Amino Acids

28.22

Weight (kDa)

10.77

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 577
AclWI GGATC 2 cut(s) 421, 684
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 3 cut(s) 29, 570, 705
AgsI TTSAA 5 cut(s) 10, 151, 334, 442, 664
AjnI CCWGG 3 cut(s) 99, 370, 710
AluBI AGCT 2 cut(s) 46, 530
AluI AGCT 2 cut(s) 46, 530
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 2 cut(s) 421, 684
AoxI GGCC 2 cut(s) 211, 615
ApeKI GCWGC 3 cut(s) 629, 722, 743
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 605, 637
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 407, 708
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 5 cut(s) 287, 352, 368, 532, 544
AvaII GGWCC 2 cut(s) 407, 708
AvrII CCTAGG 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 481, 513
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 616, 709
BccI CCATC 1 cut(s) 742
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 3 cut(s) 101, 372, 712
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 1 cut(s) 396
BisI GCNGC 4 cut(s) 112, 630, 723, 744
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 4 cut(s) 113, 631, 724, 745
Bme1390I CCNGG 4 cut(s) 101, 210, 372, 712
Bme18I GGWCC 2 cut(s) 407, 708
BmgT120I GGNCC 2 cut(s) 407, 708
BmiI GGNNCC 2 cut(s) 241, 409
BmrFI CCNGG 4 cut(s) 101, 210, 372, 712
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 5 cut(s) 99, 208, 253, 298, 395
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 570, 705
Bse1I ACTGG 2 cut(s) 34, 514
BseBI CCWGG 3 cut(s) 101, 372, 712
BseDI CCNNGG 5 cut(s) 99, 208, 253, 298, 395
BseGI GGATG 2 cut(s) 170, 405
BseLI CCNNNNNNNGG 3 cut(s) 29, 570, 705
BseMII CTCAG 3 cut(s) 378, 615, 624
BseNI ACTGG 2 cut(s) 34, 514
BseRI GAGGAG 2 cut(s) 295, 298
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 616, 709
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 213, 617
BsiEI CGRYCG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 3 cut(s) 29, 570, 705
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 2 cut(s) 213, 617
Bsp143I GATC 3 cut(s) 426, 491, 676
BspACI CCGC 2 cut(s) 111, 577
BspANI GGCC 2 cut(s) 213, 617
BspCNI CTCAG 3 cut(s) 379, 616, 625
BspLI GGNNCC 2 cut(s) 241, 409
BspPI GGATC 2 cut(s) 421, 684
BsrI ACTGG 2 cut(s) 34, 514
BssECI CCNNGG 5 cut(s) 99, 208, 253, 298, 395
BssMI GATC 3 cut(s) 426, 491, 676
BssT1I CCWWGG 1 cut(s) 395
Bst2UI CCWGG 3 cut(s) 101, 372, 712
Bst6I CTCTTC 3 cut(s) 443, 596, 698
BstAPI GCANNNNNTGC 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 75, 579
BstDEI CTNAG 4 cut(s) 387, 423, 624, 633
BstDSI CCRYGG 2 cut(s) 253, 298
BstF5I GGATG 2 cut(s) 170, 405
BstKTI GATC 3 cut(s) 429, 494, 679
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 3 cut(s) 426, 491, 676
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 4 cut(s) 219, 312, 574, 587
BstNI CCWGG 3 cut(s) 101, 372, 712
BstSCI CCNGG 4 cut(s) 99, 208, 370, 710
BstV1I GCAGC 2 cut(s) 616, 709
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 213, 617
BtgI CCRYGG 2 cut(s) 253, 298
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 2 cut(s) 170, 405
BtsIMutI CAGTG 3 cut(s) 27, 384, 557
Cac8I GCNNGC 2 cut(s) 75, 579
Cfr13I GGNCC 2 cut(s) 407, 708
Csp6I GTAC 1 cut(s) 637
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 4 cut(s) 387, 423, 624, 633
DpnI GATC 3 cut(s) 428, 493, 678
DpnII GATC 3 cut(s) 426, 491, 676
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 3 cut(s) 443, 596, 698
EarI CTCTTC 3 cut(s) 443, 596, 698
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 407, 708
Eco52I CGGCCG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 99, 370, 710
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaiI YATR 6 cut(s) 144, 158, 261, 474, 484, 748
FaqI GGGAC 1 cut(s) 393
FauI CCCGC 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 112, 630, 723, 744
FokI GGATG 2 cut(s) 177, 412
Fsp4HI GCNGC 4 cut(s) 112, 630, 723, 744
FspBI CTAG 1 cut(s) 396
GluI GCNGC 4 cut(s) 112, 630, 723, 744
HaeIII GGCC 2 cut(s) 213, 617
HapII CCGG 1 cut(s) 210
HincII GTYRAC 2 cut(s) 204, 478
HindII GTYRAC 2 cut(s) 204, 478
HinfI GANTC 2 cut(s) 93, 538
HpaII CCGG 1 cut(s) 210
HphI GGTGA 5 cut(s) 287, 352, 368, 532, 544
Hpy166II GTNNAC 3 cut(s) 204, 434, 478
Hpy188I TCNGA 3 cut(s) 468, 543, 625
Hpy188III TCNNGA 2 cut(s) 151, 657
Hpy8I GTNNAC 3 cut(s) 204, 434, 478
Hpy99I CGWCG 2 cut(s) 59, 684
HpyAV CCTTC 5 cut(s) 258, 346, 377, 511, 658
HpyCH4V TGCA 5 cut(s) 306, 568, 590, 611, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 219, 312, 574, 587
HpyF3I CTNAG 4 cut(s) 387, 423, 624, 633
Kzo9I GATC 3 cut(s) 426, 491, 676
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 2 cut(s) 616, 709
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 3 cut(s) 167, 362, 550
MalI GATC 3 cut(s) 428, 493, 678
MboI GATC 3 cut(s) 426, 491, 676
MboII GAAGA 8 cut(s) 52, 139, 361, 430, 501, 610, 613, 715
MflI RGATCY 1 cut(s) 426
MluCI AATT 2 cut(s) 131, 585
MseI TTAA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 4 cut(s) 101, 210, 372, 712
MvaI CCWGG 3 cut(s) 101, 372, 712
MwoI GCNNNNNNNGC 4 cut(s) 219, 312, 574, 587
NciI CCSGG 1 cut(s) 210
NdeII GATC 3 cut(s) 426, 491, 676
NlaIV GGNNCC 2 cut(s) 241, 409
NmuCI GTSAC 3 cut(s) 167, 362, 550
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 2 cut(s) 93, 538
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 4 cut(s) 113, 631, 724, 745
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 3 cut(s) 99, 370, 710
PspGI CCWGG 3 cut(s) 99, 370, 710
PspN4I GGNNCC 2 cut(s) 241, 409
PspPI GGNCC 2 cut(s) 407, 708
PspPPI RGGWCCY 1 cut(s) 407
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 4 cut(s) 112, 630, 723, 744
Sau3AI GATC 3 cut(s) 426, 491, 676
Sau96I GGNCC 2 cut(s) 407, 708
ScrFI CCNGG 4 cut(s) 101, 210, 372, 712
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 2 cut(s) 407, 708
SmlI CTYRAG 1 cut(s) 655
SmoI CTYRAG 1 cut(s) 655
Sse9I AATT 2 cut(s) 131, 585
SsiI CCGC 2 cut(s) 111, 577
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 99, 208, 370, 710
StyI CCWWGG 1 cut(s) 395
TaqI TCGA 3 cut(s) 48, 54, 679
TasI AATT 2 cut(s) 131, 585
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 2 cut(s) 93, 538
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 3 cut(s) 34, 391, 564
TseFI GTSAC 3 cut(s) 167, 362, 550
TseI GCWGC 3 cut(s) 629, 722, 743
Tsp45I GTSAC 3 cut(s) 167, 362, 550
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 3 cut(s) 242, 287, 419
TspRI CASTG 3 cut(s) 34, 391, 564
VpaK11BI GGWCC 2 cut(s) 407, 708
XapI RAATTY 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.