Rroxscaffold_3G00222260

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001589
Physical Location & Seq
Reverse (-)
5310191 .. 5312270
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222260.1

Sequence Viewer

Length: 807 bp
ATGAAGTTCAACATCGCCAACCCCACCACCGGTTGCCAGAAGAAGCTTGAAATCGATGACGACCACAAACTGCGTGCCTTTTTCGACAAGAGGATCTCCCAGGAAGTGAGTGGAGATGCCCTTGGAGAGGAATTTATGGGATATGTCTTTAAGATTATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTCCACCGAGGAACCCCTTGCTTCCGTGGTCACGGAAGGAGGAATGGAGAGAGGAGGAGGAAGTCTGTCCGTGGGTGCATTGTCAGCCCTGATCTTTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGACAATGATCTTCCTGGTTTGACTGACACTGAGAAGCCTAGGATGAGAGGTCCCAAGAGGGCATCTAAGATCCGAAAGCTCTTCAATCTCTCAAAGGAGGATGATGTTCGAAAGTATGTGAACACATACCGTAGATCATTCACATCAAAGACTGATCAATCCTCTCATGTGCTTCAGATGGAAATTTGGACAGTTGCATCTGTAGATGCTTGTAAGAAGGTGAGCAAAGCTCCTAAGATTCAGAGGTTGGTCACTCCTTTGACCCTTCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGGGTTGTGAAAGCCAAGTCTGAGGCTGCTGAGTACCAGAAACTCCTTGCCTCAAGATTGAAGGAACAAAGAGAACGACGCAGTGAGAGCTTGGCCAAGAAAAGGTCCAGGCTGTCTGCAGCTTCAAAGCCCTCTGTTACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

268

Amino Acids

30.44

Weight (kDa)

10.51

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 1 - 128 7.8e-53 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 101, 421
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 2 cut(s) 131, 540
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 4 cut(s) 29, 127, 627, 762
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 6 cut(s) 10, 50, 442, 626, 721, 786
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 4 cut(s) 99, 208, 370, 767
AluBI AGCT 5 cut(s) 46, 436, 587, 750, 782
AluI AGCT 5 cut(s) 46, 436, 587, 750, 782
AlwI GGATC 2 cut(s) 101, 421
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 2 cut(s) 686, 779
ApoI RAATTY 2 cut(s) 131, 540
AsiGI ACCGGT 1 cut(s) 29
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 407, 765
AsuHPI GGTGA 2 cut(s) 368, 589
AsuII TTCGAA 1 cut(s) 466
AvaII GGWCC 2 cut(s) 407, 765
AvrII CCTAGG 1 cut(s) 395
BalI TGGCCA 1 cut(s) 755
BbvI GCAGC 2 cut(s) 673, 791
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 4 cut(s) 101, 210, 372, 769
BclI TGATCA 1 cut(s) 511
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 2 cut(s) 558, 777
BisI GCNGC 2 cut(s) 687, 780
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 2 cut(s) 688, 781
Bme1390I CCNGG 4 cut(s) 101, 210, 372, 769
Bme18I GGWCC 2 cut(s) 407, 765
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 407, 765
BmiI GGNNCC 3 cut(s) 182, 241, 409
BmrFI CCNGG 4 cut(s) 101, 210, 372, 769
BmsI GCATC 4 cut(s) 106, 428, 553, 563
BplI GAGNNNNNCTC 2 cut(s) 571, 603
Bpu14I TTCGAA 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 697
Bsa29I ATCGAT 1 cut(s) 54
BsaJI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 127, 627, 762
Bse118I RCCGGY 1 cut(s) 29
BseBI CCWGG 4 cut(s) 101, 210, 372, 769
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BseGI GGATG 2 cut(s) 405, 463
BseLI CCNNNNNNNGG 4 cut(s) 29, 127, 627, 762
BseMII CTCAG 3 cut(s) 378, 672, 681
BseRI GAGGAG 2 cut(s) 295, 298
BseXI GCAGC 2 cut(s) 673, 791
BshFI GGCC 1 cut(s) 755
BshTI ACCGGT 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 54
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 4 cut(s) 29, 127, 627, 762
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 1 cut(s) 755
Bsp119I TTCGAA 1 cut(s) 466
Bsp143I GATC 6 cut(s) 93, 319, 364, 426, 491, 511
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 3 cut(s) 379, 673, 682
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 3 cut(s) 182, 241, 409
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 2 cut(s) 101, 421
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 7 cut(s) 99, 121, 208, 235, 253, 298, 395
BssMI GATC 6 cut(s) 93, 319, 364, 426, 491, 511
BssT1I CCWWGG 2 cut(s) 121, 395
Bst2UI CCWGG 4 cut(s) 101, 210, 372, 769
Bst4CI ACNGT 2 cut(s) 488, 550
Bst6I CTCTTC 2 cut(s) 443, 653
BstAPI GCANNNNNTGC 1 cut(s) 644
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 75, 636
BstDEI CTNAG 6 cut(s) 387, 423, 591, 681, 690, 804
BstDSI CCRYGG 2 cut(s) 253, 298
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 405, 463
BstKTI GATC 6 cut(s) 96, 322, 367, 429, 494, 514
BstMBI GATC 6 cut(s) 93, 319, 364, 426, 491, 511
BstMWI GCNNNNNNNGC 3 cut(s) 312, 644, 747
BstNI CCWGG 4 cut(s) 101, 210, 372, 769
BstSCI CCNGG 4 cut(s) 99, 208, 370, 767
BstSFI CTRYAG 2 cut(s) 558, 777
BstV1I GCAGC 2 cut(s) 673, 791
BstX2I RGATCY 2 cut(s) 93, 426
BstYI RGATCY 2 cut(s) 93, 426
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 1 cut(s) 755
BsuTUI ATCGAT 1 cut(s) 54
BtgI CCRYGG 2 cut(s) 253, 298
BtsCI GGATG 2 cut(s) 405, 463
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 2 cut(s) 384, 748
Cac8I GCNNGC 2 cut(s) 75, 636
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 407, 765
ClaI ATCGAT 1 cut(s) 54
CseI GACGC 1 cut(s) 747
Csp6I GTAC 1 cut(s) 694
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 1 cut(s) 524
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 6 cut(s) 387, 423, 591, 681, 690, 804
DpnI GATC 6 cut(s) 95, 321, 366, 428, 493, 513
DpnII GATC 6 cut(s) 93, 319, 364, 426, 491, 511
DriI GACNNNNNGTC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 2 cut(s) 443, 653
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 2 cut(s) 443, 653
Eco130I CCWWGG 2 cut(s) 121, 395
Eco47I GGWCC 2 cut(s) 407, 765
Eco57I CTGAAG 1 cut(s) 515
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 4 cut(s) 99, 208, 370, 767
EcoT14I CCWWGG 2 cut(s) 121, 395
ErhI CCWWGG 2 cut(s) 121, 395
FaeI CATG 1 cut(s) 527
FaiI YATR 6 cut(s) 137, 144, 158, 474, 484, 525
FaqI GGGAC 1 cut(s) 393
FatI CATG 1 cut(s) 523
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 687, 780
FokI GGATG 2 cut(s) 412, 470
Fsp4HI GCNGC 2 cut(s) 687, 780
FspBI CTAG 1 cut(s) 396
GluI GCNGC 2 cut(s) 687, 780
HaeIII GGCC 1 cut(s) 755
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 747
Hin1II CATG 1 cut(s) 527
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 1 cut(s) 595
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 368, 589
Hpy166II GTNNAC 2 cut(s) 204, 478
Hpy188I TCNGA 5 cut(s) 333, 431, 534, 600, 682
Hpy188III TCNNGA 1 cut(s) 714
Hpy8I GTNNAC 2 cut(s) 204, 478
Hpy99I CGWCG 1 cut(s) 741
HpyAV CCTTC 5 cut(s) 258, 346, 568, 632, 715
HpyCH4III ACNGT 2 cut(s) 488, 550
HpyCH4V TGCA 5 cut(s) 306, 554, 638, 647, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 644, 747
HpyF3I CTNAG 6 cut(s) 387, 423, 591, 681, 690, 804
Hsp92II CATG 1 cut(s) 527
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 6 cut(s) 93, 319, 364, 426, 491, 511
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 2 cut(s) 234, 592
Lsp1109I GCAGC 2 cut(s) 673, 791
LweI GCATC 4 cut(s) 106, 428, 553, 563
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 5 cut(s) 167, 257, 356, 607, 796
MalI GATC 6 cut(s) 95, 321, 366, 428, 493, 513
MboI GATC 6 cut(s) 93, 319, 364, 426, 491, 511
MboII GAAGA 6 cut(s) 52, 359, 361, 430, 667, 670
MflI RGATCY 2 cut(s) 93, 426
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 3 cut(s) 131, 540, 642
MluNI TGGCCA 1 cut(s) 755
Mox20I TGGCCA 1 cut(s) 755
MscI TGGCCA 1 cut(s) 755
MseI TTAA 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 755
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 4 cut(s) 101, 210, 372, 769
MvaI CCWGG 4 cut(s) 101, 210, 372, 769
MwoI GCNNNNNNNGC 3 cut(s) 312, 644, 747
NdeII GATC 6 cut(s) 93, 319, 364, 426, 491, 511
NlaIII CATG 1 cut(s) 527
NlaIV GGNNCC 3 cut(s) 182, 241, 409
NmuCI GTSAC 4 cut(s) 167, 257, 356, 607
NspV TTCGAA 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 595
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 2 cut(s) 688, 781
PpuMI RGGWCCY 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 4 cut(s) 99, 208, 370, 767
PspGI CCWGG 4 cut(s) 99, 208, 370, 767
PspN4I GGNNCC 3 cut(s) 182, 241, 409
PspPI GGNCC 2 cut(s) 407, 765
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 2 cut(s) 93, 426
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 687, 780
Sau3AI GATC 6 cut(s) 93, 319, 364, 426, 491, 511
Sau96I GGNCC 2 cut(s) 407, 765
ScrFI CCNGG 4 cut(s) 101, 210, 372, 769
SetI ASST 9 cut(s) 48, 409, 438, 579, 589, 605, 752, 767, 784
SfaNI GCATC 4 cut(s) 106, 428, 553, 563
SfcI CTRYAG 2 cut(s) 558, 777
SfuI TTCGAA 1 cut(s) 466
SinI GGWCC 2 cut(s) 407, 765
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
Sse9I AATT 3 cut(s) 131, 540, 642
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 99, 208, 370, 767
StyI CCWWGG 2 cut(s) 121, 395
TaaI ACNGT 2 cut(s) 488, 550
TaqI TCGA 3 cut(s) 54, 84, 466
TasI AATT 3 cut(s) 131, 540, 642
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 2 cut(s) 391, 748
TseFI GTSAC 4 cut(s) 167, 257, 356, 607
TseI GCWGC 2 cut(s) 686, 779
Tsp45I GTSAC 4 cut(s) 167, 257, 356, 607
TspDTI ATGAA 2 cut(s) 17, 203
TspGWI ACGGA 3 cut(s) 242, 276, 287
TspRI CASTG 2 cut(s) 391, 748
VpaK11BI GGWCC 2 cut(s) 407, 765
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 2 cut(s) 131, 540
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmaJI CCTAGG 1 cut(s) 395
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.